Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 RNF183-203ENST00000441031 1366 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
COL4A4P53420 ZNF205-206ENST00000620094 2309 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
COL4A4P53420 KMT2E-207ENST00000476671 2523 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
COL4A4P53420 ESR2-201ENST00000267525 1518 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
COL4A4P53420 LYPD5-203ENST00000594013 1519 ntAPPRIS P3 TSL 2 BASIC18.4■□□□□ 0.54
COL4A4P53420 CD81-202ENST00000381036 880 ntTSL 3 BASIC18.4■□□□□ 0.54
COL4A4P53420 TMEM176B-205ENST00000450753 1006 ntTSL 2 BASIC18.4■□□□□ 0.54
COL4A4P53420 CERNA1-201ENST00000559779 908 ntTSL 3 BASIC18.4■□□□□ 0.54
COL4A4P53420 AC104985.1-201ENST00000587528 507 ntTSL 3 BASIC18.4■□□□□ 0.54
COL4A4P53420 UBE3D-208ENST00000626828 114 ntTSL 5 BASIC18.4■□□□□ 0.54
COL4A4P53420 TUFM-201ENST00000313511 2071 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
COL4A4P53420 ZNF296-202ENST00000622376 1631 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
COL4A4P53420 NFS1-202ENST00000374085 2645 ntTSL 2 BASIC18.39■□□□□ 0.54
COL4A4P53420 DDX17-211ENST00000640332 2190 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.53
COL4A4P53420 DDX17-212ENST00000640668 2196 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
COL4A4P53420 SNX19-207ENST00000528555 1506 ntTSL 2 BASIC18.39■□□□□ 0.53
COL4A4P53420 LMNA-208ENST00000448611 1943 ntTSL 2 BASIC18.39■□□□□ 0.53
COL4A4P53420 AIP-201ENST00000279146 1221 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
COL4A4P53420 BLZF1-202ENST00000367807 1295 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
COL4A4P53420 C1orf43-203ENST00000368516 872 ntTSL 2 BASIC18.39■□□□□ 0.53
COL4A4P53420 ZSCAN2-205ENST00000379358 906 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
COL4A4P53420 UFL1-AS1-201ENST00000430796 548 ntTSL 3 BASIC18.39■□□□□ 0.53
COL4A4P53420 RNASET2-206ENST00000476238 887 ntAPPRIS P1 TSL 5 BASIC18.39■□□□□ 0.53
COL4A4P53420 SLC25A6P2-201ENST00000497974 877 ntBASIC18.39■□□□□ 0.53
COL4A4P53420 AC079140.1-201ENST00000508039 487 ntBASIC18.39■□□□□ 0.53
COL4A4P53420 GATB-205ENST00000508611 605 ntTSL 2 BASIC18.39■□□□□ 0.53
COL4A4P53420 SERF1A-207ENST00000512649 846 ntTSL 2 BASIC18.39■□□□□ 0.53
COL4A4P53420 LACTB2-203ENST00000522447 1034 ntAPPRIS P1 TSL 2 BASIC18.39■□□□□ 0.53
COL4A4P53420 ERGIC1-212ENST00000523291 586 ntTSL 2 BASIC18.39■□□□□ 0.53
COL4A4P53420 AC141424.1-203ENST00000599026 887 ntTSL 5 BASIC18.39■□□□□ 0.53
COL4A4P53420 SYNGR2-206ENST00000589711 2041 ntTSL 5 BASIC18.39■□□□□ 0.53
COL4A4P53420 SLCO4A1-AS1-202ENST00000433126 1420 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
COL4A4P53420 KMT5B-206ENST00000405515 2869 ntTSL 5 BASIC18.39■□□□□ 0.53
COL4A4P53420 CDK1-204ENST00000448257 1948 ntAPPRIS ALT1 TSL 1 (best) BASIC18.39■□□□□ 0.53
COL4A4P53420 HPCAL1-206ENST00000613496 1547 ntAPPRIS P1 TSL 3 BASIC18.39■□□□□ 0.53
COL4A4P53420 FOXL2-201ENST00000330315 2917 ntAPPRIS P1 BASIC18.39■□□□□ 0.53
COL4A4P53420 TUBB3P1-201ENST00000405796 1332 ntBASIC18.39■□□□□ 0.53
COL4A4P53420 NR1H3-204ENST00000407404 1330 ntTSL 5 BASIC18.39■□□□□ 0.53
COL4A4P53420 GNAI2-204ENST00000440628 1663 ntTSL 5 BASIC18.38■□□□□ 0.53
COL4A4P53420 DYNLL1-201ENST00000242577 720 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
COL4A4P53420 SLC25A1P3-201ENST00000395415 828 ntBASIC18.38■□□□□ 0.53
COL4A4P53420 MIR943-201ENST00000401286 94 ntBASIC18.38■□□□□ 0.53
COL4A4P53420 RPUSD3-204ENST00000424438 1005 ntTSL 2 BASIC18.38■□□□□ 0.53
COL4A4P53420 RAB3A-202ENST00000464076 1253 ntTSL 2 BASIC18.38■□□□□ 0.53
COL4A4P53420 RN7SL692P-201ENST00000464677 288 ntBASIC18.38■□□□□ 0.53
COL4A4P53420 GALNT9-208ENST00000541995 1001 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
COL4A4P53420 AC010619.1-201ENST00000599536 675 ntAPPRIS P1 TSL 5 BASIC18.38■□□□□ 0.53
COL4A4P53420 SERF2-217ENST00000630046 862 ntTSL 5 BASIC18.38■□□□□ 0.53
COL4A4P53420 CGB7-202ENST00000596965 1949 ntAPPRIS P1 TSL 2 BASIC18.38■□□□□ 0.53
COL4A4P53420 PRSS35-201ENST00000369700 2440 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
COL4A4P53420 HAUS8-201ENST00000253669 1568 ntAPPRIS P3 TSL 1 (best) BASIC18.38■□□□□ 0.53
COL4A4P53420 PGLYRP2-202ENST00000340880 2230 ntAPPRIS P2 TSL 1 (best) BASIC18.38■□□□□ 0.53
COL4A4P53420 RDH8-203ENST00000591589 1715 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
COL4A4P53420 TDG-209ENST00000544861 1387 ntTSL 2 BASIC18.38■□□□□ 0.53
COL4A4P53420 WDR53-201ENST00000332629 1679 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
COL4A4P53420 MSANTD1-201ENST00000438480 2922 ntAPPRIS P3 TSL 5 BASIC18.38■□□□□ 0.53
COL4A4P53420 CPEB2-AS1-201ENST00000500394 1630 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
COL4A4P53420 PRKAG1-206ENST00000548065 2071 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
COL4A4P53420 ZNF274-212ENST00000617501 2538 ntAPPRIS P4 TSL 1 (best) BASIC18.38■□□□□ 0.53
COL4A4P53420 CACTIN-201ENST00000221899 2797 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
COL4A4P53420 THOC7-201ENST00000295899 990 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
COL4A4P53420 RPL21-203ENST00000319826 806 ntAPPRIS P1 TSL 2 BASIC18.38■□□□□ 0.53
COL4A4P53420 BASP1P1-201ENST00000430708 665 ntBASIC18.38■□□□□ 0.53
COL4A4P53420 AC092580.3-201ENST00000430932 139 ntBASIC18.38■□□□□ 0.53
COL4A4P53420 AC016735.2-201ENST00000438736 569 ntTSL 4 BASIC18.38■□□□□ 0.53
COL4A4P53420 SPDYE14P-201ENST00000442619 822 ntBASIC18.38■□□□□ 0.53
COL4A4P53420 AC021744.1-201ENST00000518354 453 ntTSL 3 BASIC18.38■□□□□ 0.53
COL4A4P53420 WDR74-204ENST00000525239 1736 ntAPPRIS P1 TSL 2 BASIC18.38■□□□□ 0.53
COL4A4P53420 AC107918.2-201ENST00000530817 355 ntBASIC18.38■□□□□ 0.53
COL4A4P53420 MUTYH-237ENST00000531105 501 ntTSL 5 BASIC18.38■□□□□ 0.53
COL4A4P53420 AL158211.3-201ENST00000607385 239 ntBASIC18.38■□□□□ 0.53
COL4A4P53420 IL18BP-214ENST00000620017 1566 ntTSL 5 BASIC18.38■□□□□ 0.53
COL4A4P53420 PDLIM3-213ENST00000629667 1016 ntTSL 5 BASIC18.38■□□□□ 0.53
COL4A4P53420 ANXA6-201ENST00000354546 2593 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
COL4A4P53420 BORCS6-201ENST00000389017 2575 ntAPPRIS P1 BASIC18.37■□□□□ 0.53
COL4A4P53420 SOD2-215ENST00000546087 2558 ntTSL 2 BASIC18.37■□□□□ 0.53
COL4A4P53420 TCTN1-229ENST00000614115 1965 ntTSL 5 BASIC18.37■□□□□ 0.53
COL4A4P53420 SOCS2-AS1-202ENST00000500986 1655 ntTSL 2 BASIC18.37■□□□□ 0.53
COL4A4P53420 UBE2Q2-208ENST00000569423 2969 ntTSL 2 BASIC18.37■□□□□ 0.53
COL4A4P53420 IFFO1-202ENST00000356896 2680 ntTSL 5 BASIC18.37■□□□□ 0.53
COL4A4P53420 CPXM2-204ENST00000615851 2512 ntTSL 5 BASIC18.37■□□□□ 0.53
COL4A4P53420 CTTN-203ENST00000376561 2247 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
COL4A4P53420 BEGAIN-211ENST00000637646 2911 ntTSL 5 BASIC18.37■□□□□ 0.53
COL4A4P53420 SCRT1-201ENST00000569446 3779 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
COL4A4P53420 STRN3-202ENST00000357479 2799 ntAPPRIS P1 TSL 5 BASIC18.37■□□□□ 0.53
COL4A4P53420 CETN1-201ENST00000327228 1758 ntAPPRIS P1 BASIC18.37■□□□□ 0.53
COL4A4P53420 ADRA1A-202ENST00000354550 1765 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
COL4A4P53420 HS3ST2-201ENST00000261374 2314 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
COL4A4P53420 HIST1H2BN-204ENST00000612898 1723 ntAPPRIS P1 BASIC18.37■□□□□ 0.53
COL4A4P53420 UQCRC1-201ENST00000203407 1985 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
COL4A4P53420 RNF121-201ENST00000361756 2625 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
COL4A4P53420 ENDOV-201ENST00000323854 1226 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
COL4A4P53420 DANCR-201ENST00000411630 904 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
COL4A4P53420 MRPS18AP1-201ENST00000414458 589 ntBASIC18.37■□□□□ 0.53
COL4A4P53420 GRTP1-AS1-201ENST00000419199 867 ntTSL 5 BASIC18.37■□□□□ 0.53
COL4A4P53420 DICER1-AS1-202ENST00000439819 810 ntTSL 3 BASIC18.37■□□□□ 0.53
COL4A4P53420 IGHV3-42-201ENST00000520410 361 ntBASIC18.37■□□□□ 0.53
COL4A4P53420 AC005544.2-201ENST00000579138 229 ntTSL 5 BASIC18.37■□□□□ 0.53
COL4A4P53420 LINC01451-201ENST00000623792 534 ntBASIC18.37■□□□□ 0.53
COL4A4P53420 PPM1G-201ENST00000344034 2311 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 32.2 ms