Protein–RNA interactions for Protein: P51956

NEK3, Serine/threonine-protein kinase Nek3, humanhuman

Predictions only

Length 506 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3P51956 KIAA1522-203ENST00000373481 5293 ntAPPRIS ALT2 TSL 2 BASIC17.92■□□□□ 0.46
NEK3P51956 ALDH16A1-201ENST00000293350 3153 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
NEK3P51956 GFI1B-208ENST00000636263 1604 ntTSL 5 BASIC17.92■□□□□ 0.46
NEK3P51956 SEL1L3-202ENST00000399878 4520 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
NEK3P51956 FTMT-201ENST00000321339 879 ntAPPRIS P1 BASIC17.92■□□□□ 0.46
NEK3P51956 GNMT-201ENST00000372808 1072 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
NEK3P51956 NAT6-202ENST00000417393 1163 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
NEK3P51956 FOXD3-AS1-201ENST00000418244 941 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
NEK3P51956 AP002469.2-201ENST00000531724 424 ntBASIC17.92■□□□□ 0.46
NEK3P51956 MRPL21-208ENST00000567045 932 ntTSL 2 BASIC17.92■□□□□ 0.46
NEK3P51956 RNF32-201ENST00000311822 1842 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
NEK3P51956 AC046158.3-201ENST00000624947 2558 ntBASIC17.92■□□□□ 0.46
NEK3P51956 CTTN-203ENST00000376561 2247 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
NEK3P51956 CEACAM16-202ENST00000587331 1692 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
NEK3P51956 GCSH-209ENST00000639689 2412 ntTSL 5 BASIC17.92■□□□□ 0.46
NEK3P51956 AC008969.1-203ENST00000313957 1897 ntTSL 2 BASIC17.92■□□□□ 0.46
NEK3P51956 CXXC1P1-201ENST00000483225 1897 ntTSL 2 BASIC17.92■□□□□ 0.46
NEK3P51956 ZNF280D-205ENST00000559000 4726 ntAPPRIS ALT2 TSL 2 BASIC17.92■□□□□ 0.46
NEK3P51956 C5orf30-201ENST00000319933 3049 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
NEK3P51956 AC097374.2-201ENST00000618617 1306 ntBASIC17.92■□□□□ 0.46
NEK3P51956 LMNA-205ENST00000368299 2253 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
NEK3P51956 CACNA1A-227ENST00000636549 6792 ntAPPRIS ALT2 TSL 5 BASIC17.92■□□□□ 0.46
NEK3P51956 RALGAPA1-219ENST00000637992 8512 ntTSL 5 BASIC17.92■□□□□ 0.46
NEK3P51956 MOAP1-202ENST00000556883 2529 ntAPPRIS P1 TSL 2 BASIC17.92■□□□□ 0.46
NEK3P51956 ETV7-204ENST00000373738 1570 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
NEK3P51956 AC132872.2-201ENST00000581303 2368 ntTSL 5 BASIC17.91■□□□□ 0.46
NEK3P51956 AC011270.2-201ENST00000624293 2550 ntBASIC17.91■□□□□ 0.46
NEK3P51956 AGAP2-201ENST00000257897 5388 ntAPPRIS P3 TSL 1 (best) BASIC17.91■□□□□ 0.46
NEK3P51956 NUP153-202ENST00000537253 6030 ntAPPRIS ALT2 TSL 2 BASIC17.91■□□□□ 0.46
NEK3P51956 H2AFV-201ENST00000222690 3804 ntAPPRIS ALT1 TSL 2 BASIC17.91■□□□□ 0.46
NEK3P51956 HLA-A-203ENST00000376809 1611 ntAPPRIS P1 BASIC17.91■□□□□ 0.46
NEK3P51956 QRICH1-201ENST00000357496 3083 ntAPPRIS P1 TSL 2 BASIC17.91■□□□□ 0.46
NEK3P51956 BCAM-206ENST00000589651 2686 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
NEK3P51956 NKX2-2-201ENST00000377142 2092 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
NEK3P51956 ARHGEF18-201ENST00000319670 5212 ntAPPRIS P3 TSL 1 (best) BASIC17.91■□□□□ 0.46
NEK3P51956 FBXO18-201ENST00000362091 3560 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
NEK3P51956 METTL21C-201ENST00000267273 1088 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
NEK3P51956 TBC1D7-202ENST00000356436 1116 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
NEK3P51956 TBC1D7-204ENST00000379300 1276 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
NEK3P51956 AL022314.1-201ENST00000414203 464 ntTSL 5 BASIC17.91■□□□□ 0.46
NEK3P51956 AC009078.2-202ENST00000463353 338 ntBASIC17.91■□□□□ 0.46
NEK3P51956 AC021066.1-201ENST00000549788 647 ntTSL 3 BASIC17.91■□□□□ 0.46
NEK3P51956 SMAD3-210ENST00000559092 584 ntTSL 4 BASIC17.91■□□□□ 0.46
NEK3P51956 IRF8-202ENST00000562492 946 ntTSL 3 BASIC17.91■□□□□ 0.46
NEK3P51956 CALM3-211ENST00000598871 561 ntTSL 4 BASIC17.91■□□□□ 0.46
NEK3P51956 LDHAL6A-203ENST00000615355 1042 ntTSL 5 BASIC17.91■□□□□ 0.46
NEK3P51956 DMKN-201ENST00000339686 1927 ntAPPRIS P3 TSL 1 (best) BASIC17.91■□□□□ 0.46
NEK3P51956 DCAF12L2-201ENST00000360028 2599 ntAPPRIS P1 BASIC17.91■□□□□ 0.46
NEK3P51956 JRK-211ENST00000615982 2823 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
NEK3P51956 CYP2D7-208ENST00000614967 1504 ntTSL 5 BASIC17.91■□□□□ 0.46
NEK3P51956 PRPF31-202ENST00000391755 1767 ntTSL 5 BASIC17.91■□□□□ 0.46
NEK3P51956 MAGEA3-203ENST00000598245 1762 ntAPPRIS P1 TSL 2 BASIC17.91■□□□□ 0.46
NEK3P51956 MAGEA6-204ENST00000616035 1762 ntAPPRIS P1 TSL 5 BASIC17.91■□□□□ 0.46
NEK3P51956 DMRTA1-201ENST00000325870 5569 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
NEK3P51956 ZNF470-201ENST00000330619 7151 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
NEK3P51956 SDCBP2-204ENST00000381812 1550 ntAPPRIS P1 TSL 5 BASIC17.91■□□□□ 0.46
NEK3P51956 ECE2-201ENST00000324557 1823 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
NEK3P51956 AC133561.2-201ENST00000380145 1802 ntTSL 2 BASIC17.91■□□□□ 0.46
NEK3P51956 NIPAL2-201ENST00000341166 4581 ntTSL 2 BASIC17.91■□□□□ 0.46
NEK3P51956 AC011840.1-202ENST00000436477 1351 ntTSL 2 BASIC17.91■□□□□ 0.46
NEK3P51956 KRT8P47-201ENST00000604727 1398 ntBASIC17.91■□□□□ 0.46
NEK3P51956 C17orf62-203ENST00000434650 2050 ntTSL 2 BASIC17.91■□□□□ 0.46
NEK3P51956 AC133548.2-201ENST00000568567 2605 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
NEK3P51956 TBC1D10C-209ENST00000542590 1659 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
NEK3P51956 MAFB-201ENST00000373313 3393 ntAPPRIS P1 BASIC17.9■□□□□ 0.46
NEK3P51956 RABL2A-204ENST00000393167 2179 ntAPPRIS P3 TSL 1 (best) BASIC17.9■□□□□ 0.46
NEK3P51956 TCAF2-203ENST00000425618 2448 ntTSL 2 BASIC17.9■□□□□ 0.46
NEK3P51956 AGBL5-202ENST00000360131 3177 ntAPPRIS P3 TSL 1 (best) BASIC17.9■□□□□ 0.46
NEK3P51956 TMEM216-203ENST00000515837 1958 ntAPPRIS P2 TSL 2 BASIC17.9■□□□□ 0.46
NEK3P51956 MIS18BP1-212ENST00000627697 1950 ntTSL 5 BASIC17.9■□□□□ 0.46
NEK3P51956 ALDH5A1-202ENST00000357578 5248 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
NEK3P51956 TTLL10-202ENST00000379289 2259 ntAPPRIS P1 TSL 2 BASIC17.9■□□□□ 0.46
NEK3P51956 ORAOV1-206ENST00000536870 2274 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
NEK3P51956 SERPINB6-208ENST00000616722 2047 ntTSL 2 BASIC17.9■□□□□ 0.46
NEK3P51956 HYAL1-203ENST00000395143 1522 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
NEK3P51956 AC002310.5-201ENST00000569360 1515 ntAPPRIS P1 TSL 2 BASIC17.9■□□□□ 0.46
NEK3P51956 PHPT1-202ENST00000371661 985 ntTSL 5 BASIC17.9■□□□□ 0.46
NEK3P51956 FAM220CP-201ENST00000395253 831 ntBASIC17.9■□□□□ 0.46
NEK3P51956 TRPC2-202ENST00000526541 1189 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
NEK3P51956 REXO2-206ENST00000539275 710 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
NEK3P51956 AC008608.2-201ENST00000606089 416 ntBASIC17.9■□□□□ 0.46
NEK3P51956 VPS51-217ENST00000639871 243 ntTSL 5 BASIC17.9■□□□□ 0.46
NEK3P51956 MEI1-215ENST00000540833 2326 ntTSL 5 BASIC17.9■□□□□ 0.46
NEK3P51956 SEH1L-202ENST00000399892 1846 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
NEK3P51956 ASIC2-201ENST00000225823 3443 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
NEK3P51956 WDR90-215ENST00000549091 5589 ntAPPRIS ALT2 TSL 5 BASIC17.9■□□□□ 0.46
NEK3P51956 WASF1-205ENST00000392587 2675 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
NEK3P51956 HR-201ENST00000312841 5351 ntTSL 5 BASIC17.9■□□□□ 0.46
NEK3P51956 SHE-201ENST00000304760 6243 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
NEK3P51956 KIF25-203ENST00000443060 1613 ntAPPRIS P1 TSL 5 BASIC17.9■□□□□ 0.46
NEK3P51956 GJA3-201ENST00000241125 5211 ntAPPRIS P1 TSL 3 BASIC17.9■□□□□ 0.46
NEK3P51956 PORCN-205ENST00000367574 1368 ntAPPRIS ALT1 TSL 1 (best) BASIC17.9■□□□□ 0.46
NEK3P51956 PORCN-214ENST00000537758 1371 ntAPPRIS ALT1 TSL 1 (best) BASIC17.9■□□□□ 0.46
NEK3P51956 FAM181B-201ENST00000329203 3924 ntAPPRIS P1 BASIC17.9■□□□□ 0.46
NEK3P51956 VSTM2A-204ENST00000407838 3112 ntAPPRIS P1 TSL 3 BASIC17.89■□□□□ 0.46
NEK3P51956 NADK2-206ENST00000506945 1437 ntTSL 2 BASIC17.89■□□□□ 0.46
NEK3P51956 TMEM25-225ENST00000533102 1410 ntTSL 1 (best) BASIC17.89■□□□□ 0.46
NEK3P51956 IGFBP3-203ENST00000381086 2322 ntTSL 2 BASIC17.89■□□□□ 0.46
NEK3P51956 NEK3-206ENST00000611833 2345 ntAPPRIS ALT2 TSL 5 BASIC17.89■□□□□ 0.46
NEK3P51956 CCDC188-201ENST00000439765 1475 ntAPPRIS P1 TSL 5 BASIC17.89■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 34.2 ms