Protein–RNA interactions for Protein: P51790

CLCN3, H(+)/Cl(-) exchange transporter 3, humanhuman

Predictions only

Length 818 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLCN3P51790 MTDHP5-201ENST00000598980 586 ntBASIC19.02■□□□□ 0.64
CLCN3P51790 NOP14-204ENST00000502735 2723 ntAPPRIS ALT2 TSL 5 BASIC19.02■□□□□ 0.64
CLCN3P51790 TMEM175-201ENST00000264771 1860 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
CLCN3P51790 NLE1-201ENST00000360831 1726 ntTSL 5 BASIC19.02■□□□□ 0.63
CLCN3P51790 GTDC1-219ENST00000542155 2677 ntAPPRIS P1 TSL 2 BASIC19.02■□□□□ 0.63
CLCN3P51790 DDX31-201ENST00000310532 2408 ntTSL 2 BASIC19.02■□□□□ 0.63
CLCN3P51790 PGM5-202ENST00000396396 3338 ntAPPRIS P1 TSL 2 BASIC19.02■□□□□ 0.63
CLCN3P51790 BANP-217ENST00000479780 1551 ntTSL 1 (best) BASIC19.02■□□□□ 0.63
CLCN3P51790 WWC1-201ENST00000265293 7130 ntAPPRIS P3 TSL 1 (best) BASIC19.01■□□□□ 0.63
CLCN3P51790 HSPA4-205ENST00000617074 2358 ntTSL 5 BASIC19.01■□□□□ 0.63
CLCN3P51790 OLFM2-203ENST00000590841 1665 ntTSL 2 BASIC19.01■□□□□ 0.63
CLCN3P51790 CFLAR-208ENST00000423241 2128 ntAPPRIS P3 TSL 1 (best) BASIC19.01■□□□□ 0.63
CLCN3P51790 FFAR2-202ENST00000599180 2133 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
CLCN3P51790 POMT2-201ENST00000261534 4876 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
CLCN3P51790 FMO5-208ENST00000578284 1784 ntTSL 5 BASIC19.01■□□□□ 0.63
CLCN3P51790 SNTB1-201ENST00000395601 5164 ntAPPRIS P1 TSL 5 BASIC19.01■□□□□ 0.63
CLCN3P51790 ADRA1A-206ENST00000380586 2304 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
CLCN3P51790 IL17RC-206ENST00000416074 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
CLCN3P51790 UBE2G1-204ENST00000572484 1514 ntTSL 5 BASIC19.01■□□□□ 0.63
CLCN3P51790 FHL1-205ENST00000370690 2441 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
CLCN3P51790 KRTCAP2-201ENST00000295682 552 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
CLCN3P51790 CPSF1-207ENST00000531727 704 ntTSL 3 BASIC19.01■□□□□ 0.63
CLCN3P51790 CD63-210ENST00000550776 870 ntTSL 5 BASIC19.01■□□□□ 0.63
CLCN3P51790 TMEM177-201ENST00000272521 1394 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
CLCN3P51790 HAPLN4-201ENST00000291481 3449 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
CLCN3P51790 AC134043.2-201ENST00000624206 2238 ntBASIC19.01■□□□□ 0.63
CLCN3P51790 TNFAIP2-201ENST00000333007 4175 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
CLCN3P51790 ATP2A2-201ENST00000308664 4453 ntAPPRIS ALT1 TSL 1 (best) BASIC19.01■□□□□ 0.63
CLCN3P51790 RNFT2-204ENST00000407967 2415 ntTSL 5 BASIC19.01■□□□□ 0.63
CLCN3P51790 PTPRJ-202ENST00000440289 3158 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
CLCN3P51790 GAL3ST1-201ENST00000338911 1782 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
CLCN3P51790 DDIT4L-201ENST00000273990 2604 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
CLCN3P51790 MAPK8IP3-216ENST00000610761 5626 ntAPPRIS ALT1 TSL 1 (best) BASIC19■□□□□ 0.63
CLCN3P51790 CYP2D6-204ENST00000389970 1714 ntTSL 5 BASIC19■□□□□ 0.63
CLCN3P51790 SEPHS1-206ENST00000545675 2988 ntTSL 1 (best) BASIC19■□□□□ 0.63
CLCN3P51790 ANKRD6-201ENST00000339746 3073 ntAPPRIS ALT1 TSL 1 (best) BASIC19■□□□□ 0.63
CLCN3P51790 MTSS1L-204ENST00000616026 2241 ntAPPRIS ALT2 TSL 5 BASIC19■□□□□ 0.63
CLCN3P51790 DNAJC4-203ENST00000355040 759 ntTSL 1 (best) BASIC19■□□□□ 0.63
CLCN3P51790 PARK7-203ENST00000377491 977 ntAPPRIS P1 TSL 3 BASIC19■□□□□ 0.63
CLCN3P51790 HUS1B-201ENST00000380907 1025 ntAPPRIS P1 BASIC19■□□□□ 0.63
CLCN3P51790 MCCD1P2-201ENST00000423228 335 ntBASIC19■□□□□ 0.63
CLCN3P51790 ZNF295-AS1-202ENST00000429739 783 ntTSL 1 (best) BASIC19■□□□□ 0.63
CLCN3P51790 ALG1L5P-201ENST00000482043 771 ntBASIC19■□□□□ 0.63
CLCN3P51790 LHX5-AS1-201ENST00000551357 522 ntTSL 2 BASIC19■□□□□ 0.63
CLCN3P51790 AC096734.2-201ENST00000562054 433 ntBASIC19■□□□□ 0.63
CLCN3P51790 AC243773.2-203ENST00000612281 640 ntTSL 3 BASIC19■□□□□ 0.63
CLCN3P51790 AC004877.2-201ENST00000623941 599 ntBASIC19■□□□□ 0.63
CLCN3P51790 PRKAR2A-201ENST00000265563 6471 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
CLCN3P51790 TMED9-201ENST00000332598 1473 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
CLCN3P51790 TBXAS1-202ENST00000411653 1792 ntTSL 1 (best) BASIC19■□□□□ 0.63
CLCN3P51790 AC022916.1-201ENST00000590478 2658 ntTSL 2 BASIC19■□□□□ 0.63
CLCN3P51790 CCNJL-203ENST00000393977 3320 ntTSL 1 (best) BASIC19■□□□□ 0.63
CLCN3P51790 ACSF2-201ENST00000300441 2235 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
CLCN3P51790 MXRA8-202ENST00000342753 2231 ntTSL 1 (best) BASIC19■□□□□ 0.63
CLCN3P51790 BCL2L11-201ENST00000308659 1522 ntAPPRIS ALT2 TSL 2 BASIC19■□□□□ 0.63
CLCN3P51790 PRKN-202ENST00000366892 1505 ntTSL 5 BASIC19■□□□□ 0.63
CLCN3P51790 BCAR1-209ENST00000546196 1340 ntBASIC19■□□□□ 0.63
CLCN3P51790 GPC5-201ENST00000377067 2957 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
CLCN3P51790 NOMO2-201ENST00000330537 4352 ntAPPRIS ALT2 TSL 5 BASIC18.99■□□□□ 0.63
CLCN3P51790 MAP3K13-212ENST00000448876 1681 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
CLCN3P51790 ALDH2-202ENST00000416293 1572 ntTSL 2 BASIC18.99■□□□□ 0.63
CLCN3P51790 CLN3-203ENST00000357806 1469 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
CLCN3P51790 C6orf106-202ENST00000374023 4418 ntAPPRIS P4 TSL 1 (best) BASIC18.99■□□□□ 0.63
CLCN3P51790 PC-214ENST00000628663 1470 ntTSL 5 BASIC18.99■□□□□ 0.63
CLCN3P51790 TMEM155-201ENST00000337677 2313 ntAPPRIS P2 TSL 1 (best) BASIC18.99■□□□□ 0.63
CLCN3P51790 SH3TC1-202ENST00000382521 829 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
CLCN3P51790 MRPS12-203ENST00000407800 1220 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
CLCN3P51790 JMJD7-203ENST00000408047 1192 ntTSL 5 BASIC18.99■□□□□ 0.63
CLCN3P51790 RPS8P6-201ENST00000426177 609 ntBASIC18.99■□□□□ 0.63
CLCN3P51790 PIGBOS1-201ENST00000436697 866 ntAPPRIS P2 TSL 2 BASIC18.99■□□□□ 0.63
CLCN3P51790 PAWRP1-201ENST00000451083 565 ntBASIC18.99■□□□□ 0.63
CLCN3P51790 FAM172A-207ENST00000509739 1031 ntTSL 2 BASIC18.99■□□□□ 0.63
CLCN3P51790 AC092115.3-201ENST00000575838 592 ntTSL 5 BASIC18.99■□□□□ 0.63
CLCN3P51790 CD40-201ENST00000372276 1623 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
CLCN3P51790 DDX17-211ENST00000640332 2190 ntAPPRIS P3 TSL 1 (best) BASIC18.99■□□□□ 0.63
CLCN3P51790 DDX17-212ENST00000640668 2196 ntAPPRIS ALT2 TSL 1 (best) BASIC18.99■□□□□ 0.63
CLCN3P51790 HMBS-203ENST00000442944 1548 ntTSL 5 BASIC18.99■□□□□ 0.63
CLCN3P51790 LINC01554-202ENST00000436592 2052 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
CLCN3P51790 SIL1-201ENST00000265195 1895 ntAPPRIS P1 TSL 5 BASIC18.99■□□□□ 0.63
CLCN3P51790 LGI3-201ENST00000306317 3272 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
CLCN3P51790 SHOX-204ENST00000554971 1902 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
CLCN3P51790 FAM57B-201ENST00000279389 1481 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
CLCN3P51790 PKD1L2-209ENST00000531391 1488 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
CLCN3P51790 THAP3-201ENST00000054650 1366 ntAPPRIS ALT2 TSL 1 (best) BASIC18.98■□□□□ 0.63
CLCN3P51790 LARGE2-208ENST00000531526 2528 ntAPPRIS P3 TSL 2 BASIC18.98■□□□□ 0.63
CLCN3P51790 REEP1-208ENST00000538924 1702 ntTSL 5 BASIC18.98■□□□□ 0.63
CLCN3P51790 TNNT1-201ENST00000291901 967 ntAPPRIS ALT2 TSL 1 (best) BASIC18.98■□□□□ 0.63
CLCN3P51790 THAP3-202ENST00000307896 1046 ntAPPRIS ALT2 TSL 2 BASIC18.98■□□□□ 0.63
CLCN3P51790 COA5-202ENST00000409997 557 ntTSL 4 BASIC18.98■□□□□ 0.63
CLCN3P51790 GLI4-207ENST00000521682 1082 ntTSL 3 BASIC18.98■□□□□ 0.63
CLCN3P51790 AC105202.1-202ENST00000522060 834 ntTSL 3 BASIC18.98■□□□□ 0.63
CLCN3P51790 AC092718.3-202ENST00000564536 1032 ntAPPRIS P5 TSL 5 BASIC18.98■□□□□ 0.63
CLCN3P51790 SPATA33-208ENST00000568929 1264 ntAPPRIS ALT2 TSL 2 BASIC18.98■□□□□ 0.63
CLCN3P51790 STX10-207ENST00000589083 1241 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
CLCN3P51790 LINC00623-201ENST00000613486 486 ntTSL 5 BASIC18.98■□□□□ 0.63
CLCN3P51790 AQP6-205ENST00000618286 829 ntTSL 5 BASIC18.98■□□□□ 0.63
CLCN3P51790 WTAP-205ENST00000614346 1623 ntTSL 2 BASIC18.98■□□□□ 0.63
CLCN3P51790 NFKB2-201ENST00000189444 3011 ntAPPRIS ALT1 TSL 1 (best) BASIC18.98■□□□□ 0.63
CLCN3P51790 ZNF416-201ENST00000196489 2561 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
CLCN3P51790 GATB-213ENST00000515812 1893 ntTSL 5 BASIC18.98■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 58.3 ms