Protein–RNA interactions for Protein: P32297

CHRNA3, Neuronal acetylcholine receptor subunit alpha-3, humanhuman

Predictions only

Length 505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHRNA3P32297 AC104819.1-201ENST00000504587 486 ntBASIC18.32■□□□□ 0.52
CHRNA3P32297 KLK12-205ENST00000529888 735 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
CHRNA3P32297 AC074051.2-201ENST00000565115 352 ntBASIC18.32■□□□□ 0.52
CHRNA3P32297 ZFPM1-205ENST00000569086 563 ntTSL 2 BASIC18.32■□□□□ 0.52
CHRNA3P32297 ANAPC11-204ENST00000571024 668 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CHRNA3P32297 AC011840.4-201ENST00000578471 627 ntBASIC18.32■□□□□ 0.52
CHRNA3P32297 ANAPC11-218ENST00000582222 523 ntTSL 2 BASIC18.32■□□□□ 0.52
CHRNA3P32297 Z69720.1-201ENST00000601483 472 ntBASIC18.32■□□□□ 0.52
CHRNA3P32297 Metazoa_SRP.104-201ENST00000622099 280 ntBASIC18.32■□□□□ 0.52
CHRNA3P32297 ANKRD20A8P-203ENST00000641373 517 ntBASIC18.32■□□□□ 0.52
CHRNA3P32297 PCDHA6-202ENST00000527624 2231 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
CHRNA3P32297 ARPC1B-201ENST00000252725 1551 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CHRNA3P32297 PACS2-205ENST00000547217 2809 ntTSL 5 BASIC18.32■□□□□ 0.52
CHRNA3P32297 CHAT-201ENST00000337653 2458 ntAPPRIS P4 TSL 1 (best) BASIC18.32■□□□□ 0.52
CHRNA3P32297 CDK11B-207ENST00000626918 2457 ntTSL 5 BASIC18.32■□□□□ 0.52
CHRNA3P32297 PRR18-201ENST00000322583 3084 ntAPPRIS P2 BASIC18.32■□□□□ 0.52
CHRNA3P32297 SLC22A1-201ENST00000324965 1521 ntTSL 5 BASIC18.32■□□□□ 0.52
CHRNA3P32297 USF2-202ENST00000343550 1523 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
CHRNA3P32297 RPAIN-203ENST00000381209 1535 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CHRNA3P32297 TCAF2-203ENST00000425618 2448 ntTSL 2 BASIC18.32■□□□□ 0.52
CHRNA3P32297 C6orf141-206ENST00000529246 1450 ntAPPRIS P1 BASIC18.32■□□□□ 0.52
CHRNA3P32297 SLC29A1-208ENST00000393844 2326 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CHRNA3P32297 EPB41L3-207ENST00000545076 3190 ntAPPRIS ALT2 TSL 2 BASIC18.32■□□□□ 0.52
CHRNA3P32297 TRIM17-201ENST00000295033 1730 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CHRNA3P32297 TRIM17-204ENST00000366698 1748 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CHRNA3P32297 SFT2D3-201ENST00000310981 3735 ntAPPRIS P1 BASIC18.32■□□□□ 0.52
CHRNA3P32297 DCLK2-204ENST00000506325 2298 ntAPPRIS ALT2 TSL 5 BASIC18.32■□□□□ 0.52
CHRNA3P32297 SRF-201ENST00000265354 4202 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CHRNA3P32297 ACBD6-201ENST00000367595 1670 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CHRNA3P32297 FAM174B-201ENST00000327355 2792 ntAPPRIS P2 TSL 1 (best) BASIC18.31■□□□□ 0.52
CHRNA3P32297 ABHD14B-204ENST00000461108 1397 ntTSL 2 BASIC18.31■□□□□ 0.52
CHRNA3P32297 SHOX-204ENST00000554971 1902 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CHRNA3P32297 MRPL4-203ENST00000393733 1620 ntTSL 5 BASIC18.31■□□□□ 0.52
CHRNA3P32297 HGS-201ENST00000329138 2970 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CHRNA3P32297 REL-202ENST00000394479 2398 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
CHRNA3P32297 JHDM1D-AS1-201ENST00000566699 2380 ntBASIC18.31■□□□□ 0.52
CHRNA3P32297 CDK4-201ENST00000257904 2076 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CHRNA3P32297 WLS-205ENST00000370976 2332 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
CHRNA3P32297 NFIB-201ENST00000380921 1274 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
CHRNA3P32297 ITM2C-204ENST00000409704 1106 ntTSL 5 BASIC18.31■□□□□ 0.52
CHRNA3P32297 PHGR1-201ENST00000448599 436 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
CHRNA3P32297 VENTXP7-201ENST00000475503 772 ntBASIC18.31■□□□□ 0.52
CHRNA3P32297 RBM14-RBM4-203ENST00000500635 829 ntTSL 2 BASIC18.31■□□□□ 0.52
CHRNA3P32297 REPIN1-217ENST00000518514 478 ntTSL 3 BASIC18.31■□□□□ 0.52
CHRNA3P32297 AC064807.1-201ENST00000518942 816 ntTSL 3 BASIC18.31■□□□□ 0.52
CHRNA3P32297 COX6C-204ENST00000520271 571 ntAPPRIS P1 TSL 2 BASIC18.31■□□□□ 0.52
CHRNA3P32297 ZNF688-207ENST00000567855 540 ntTSL 2 BASIC18.31■□□□□ 0.52
CHRNA3P32297 C19orf25-204ENST00000586564 1265 ntAPPRIS P1 TSL 3 BASIC18.31■□□□□ 0.52
CHRNA3P32297 BIRC5-207ENST00000590449 568 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
CHRNA3P32297 SMN2-213ENST00000614240 804 ntAPPRIS ALT2 TSL 5 BASIC18.31■□□□□ 0.52
CHRNA3P32297 AC009154.2-201ENST00000621177 724 ntBASIC18.31■□□□□ 0.52
CHRNA3P32297 SQOR-208ENST00000568606 1792 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
CHRNA3P32297 NSUN5P2-205ENST00000602348 1776 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
CHRNA3P32297 GINS4-206ENST00000520710 2022 ntTSL 2 BASIC18.31■□□□□ 0.52
CHRNA3P32297 PTPA-203ENST00000348141 2737 ntTSL 5 BASIC18.31■□□□□ 0.52
CHRNA3P32297 PTPA-207ENST00000393370 2737 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CHRNA3P32297 NDUFV1-223ENST00000532303 1493 ntTSL 2 BASIC18.31■□□□□ 0.52
CHRNA3P32297 RHBDF1P1-201ENST00000427504 1941 ntBASIC18.31■□□□□ 0.52
CHRNA3P32297 LZTS3-203ENST00000360342 4055 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
CHRNA3P32297 RBFA-202ENST00000306735 1407 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CHRNA3P32297 STAT5A-207ENST00000546010 3086 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
CHRNA3P32297 TINF2-201ENST00000267415 1852 ntAPPRIS P4 TSL 1 (best) BASIC18.31■□□□□ 0.52
CHRNA3P32297 RAD51-203ENST00000423169 1611 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
CHRNA3P32297 ADAM22-202ENST00000398201 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
CHRNA3P32297 SCP2-202ENST00000371513 2003 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
CHRNA3P32297 SYBU-224ENST00000529690 1983 ntAPPRIS ALT2 TSL 2 BASIC18.3■□□□□ 0.52
CHRNA3P32297 BMPER-201ENST00000297161 5031 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CHRNA3P32297 SLC1A4-201ENST00000234256 4561 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CHRNA3P32297 NFKBID-210ENST00000606253 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
CHRNA3P32297 BBS7-204ENST00000506636 2570 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
CHRNA3P32297 ASL-201ENST00000304874 2143 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CHRNA3P32297 SPIN2B-202ENST00000333933 1258 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CHRNA3P32297 KRTAP5-6-201ENST00000382160 561 ntAPPRIS P1 BASIC18.3■□□□□ 0.52
CHRNA3P32297 KRT17P6-201ENST00000453795 1220 ntBASIC18.3■□□□□ 0.52
CHRNA3P32297 AC008610.1-201ENST00000504573 393 ntTSL 2 BASIC18.3■□□□□ 0.52
CHRNA3P32297 PP7080-204ENST00000510714 601 ntTSL 3 BASIC18.3■□□□□ 0.52
CHRNA3P32297 TMEM41B-203ENST00000527813 803 ntTSL 5 BASIC18.3■□□□□ 0.52
CHRNA3P32297 RPL28-210ENST00000560583 1204 ntTSL 2 BASIC18.3■□□□□ 0.52
CHRNA3P32297 PHF20L1-220ENST00000622263 3375 ntAPPRIS P1 TSL 5 BASIC18.3■□□□□ 0.52
CHRNA3P32297 PDLIM2-206ENST00000409141 1463 ntTSL 2 BASIC18.3■□□□□ 0.52
CHRNA3P32297 POLR3E-203ENST00000418581 2529 ntTSL 2 BASIC18.3■□□□□ 0.52
CHRNA3P32297 KRT28-201ENST00000306658 1685 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CHRNA3P32297 TEF-201ENST00000266304 4394 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CHRNA3P32297 LETM2-202ENST00000379957 1873 ntAPPRIS ALT2 TSL 5 BASIC18.3■□□□□ 0.52
CHRNA3P32297 SYT15-202ENST00000374323 6428 ntTSL 2 BASIC18.3■□□□□ 0.52
CHRNA3P32297 SYTL3-203ENST00000367081 2692 ntAPPRIS P3 TSL 5 BASIC18.3■□□□□ 0.52
CHRNA3P32297 DCAF12L2-201ENST00000360028 2599 ntAPPRIS P1 BASIC18.3■□□□□ 0.52
CHRNA3P32297 DKK1-201ENST00000373970 1790 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CHRNA3P32297 RND2-202ENST00000587250 4147 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CHRNA3P32297 TLK2-201ENST00000326270 3512 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
CHRNA3P32297 SPRYD7-201ENST00000361840 3053 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CHRNA3P32297 CD244-203ENST00000368034 2463 ntAPPRIS P3 TSL 1 (best) BASIC18.29■□□□□ 0.52
CHRNA3P32297 OR2C3-203ENST00000617752 2481 ntAPPRIS P1 BASIC18.29■□□□□ 0.52
CHRNA3P32297 PTHLH-201ENST00000201015 1872 ntAPPRIS P3 TSL 3 BASIC18.29■□□□□ 0.52
CHRNA3P32297 OS9-205ENST00000413095 1660 ntTSL 2 BASIC18.29■□□□□ 0.52
CHRNA3P32297 MRPS30-202ENST00000507110 1678 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CHRNA3P32297 FSCN1-201ENST00000382361 2777 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CHRNA3P32297 RAPGEFL1-212ENST00000620260 3855 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CHRNA3P32297 GSR-201ENST00000221130 3119 ntAPPRIS P3 TSL 1 (best) BASIC18.29■□□□□ 0.52
CHRNA3P32297 SPATA22-202ENST00000355380 1216 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 23.6 ms