Protein–RNA interactions for Protein: P04114

APOB, Apolipoprotein B-100, humanhuman

Known RBP Predictions only

Length 4,563 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOBP04114 DUSP6-204ENST00000547291 1074 ntTSL 2 BASIC10.67□□□□□ -0.7
APOBP04114 MIR3909-201ENST00000579518 119 ntBASIC10.67□□□□□ -0.7
APOBP04114 SSH2-210ENST00000582084 560 ntTSL 3 BASIC10.67□□□□□ -0.7
APOBP04114 AC012615.6-204ENST00000587741 477 ntTSL 3 BASIC10.67□□□□□ -0.7
APOBP04114 AC099568.2-201ENST00000609194 695 ntBASIC10.67□□□□□ -0.7
APOBP04114 PAPD5-203ENST00000561678 2916 ntTSL 5 BASIC10.67□□□□□ -0.7
APOBP04114 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC10.67□□□□□ -0.7
APOBP04114 RBPJ-204ENST00000348160 1752 ntAPPRIS ALT1 TSL 1 (best) BASIC10.67□□□□□ -0.7
APOBP04114 KDM4B-202ENST00000381759 3058 ntTSL 1 (best) BASIC10.67□□□□□ -0.7
APOBP04114 AC091729.2-201ENST00000415656 302 ntTSL 3 BASIC10.67□□□□□ -0.7
APOBP04114 HCG4-201ENST00000418983 998 ntBASIC10.67□□□□□ -0.7
APOBP04114 COMT-209ENST00000449653 1035 ntAPPRIS ALT2 TSL 1 (best) BASIC10.67□□□□□ -0.7
APOBP04114 RNA5SP423-201ENST00000517127 109 ntBASIC10.67□□□□□ -0.7
APOBP04114 AC009902.2-201ENST00000518880 620 ntTSL 4 BASIC10.67□□□□□ -0.7
APOBP04114 GPR182-203ENST00000622922 591 ntBASIC10.67□□□□□ -0.7
APOBP04114 TBC1D19-201ENST00000264866 2263 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
APOBP04114 CHEK1-202ENST00000427383 1670 ntTSL 1 (best) BASIC10.67□□□□□ -0.7
APOBP04114 PGC-202ENST00000373025 1371 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
APOBP04114 VASH1-203ENST00000554237 1462 ntTSL 1 (best) BASIC10.67□□□□□ -0.7
APOBP04114 ELN-202ENST00000320399 2274 ntAPPRIS ALT2 TSL 5 BASIC10.67□□□□□ -0.7
APOBP04114 CACTIN-202ENST00000248420 2671 ntAPPRIS P1 TSL 5 BASIC10.67□□□□□ -0.7
APOBP04114 SEPT6-202ENST00000354228 1576 ntAPPRIS P4 TSL 1 (best) BASIC10.67□□□□□ -0.7
APOBP04114 ST3GAL4-209ENST00000526727 1967 ntAPPRIS ALT1 TSL 1 (best) BASIC10.67□□□□□ -0.7
APOBP04114 BANF1-201ENST00000312175 1155 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
APOBP04114 FCRLB-204ENST00000367946 1152 ntTSL 1 (best) BASIC10.67□□□□□ -0.7
APOBP04114 DMKN-204ENST00000408915 600 ntAPPRIS ALT2 TSL 1 (best) BASIC10.67□□□□□ -0.7
APOBP04114 AL080243.2-201ENST00000418783 582 ntBASIC10.67□□□□□ -0.7
APOBP04114 IQCF3-202ENST00000440739 505 ntAPPRIS P1 TSL 2 BASIC10.67□□□□□ -0.7
APOBP04114 ZNF331-214ENST00000511154 2120 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
APOBP04114 PACS1-203ENST00000524815 628 ntTSL 4 BASIC10.67□□□□□ -0.7
APOBP04114 AC129507.3-201ENST00000571512 913 ntTSL 2 BASIC10.67□□□□□ -0.7
APOBP04114 MTDH-203ENST00000519934 2184 ntTSL 5 BASIC10.67□□□□□ -0.7
APOBP04114 SAMD11-214ENST00000618323 2159 ntTSL 5 BASIC10.67□□□□□ -0.7
APOBP04114 BAGE2-202ENST00000474011 1482 ntTSL 2 BASIC10.67□□□□□ -0.7
APOBP04114 TUBB2B-201ENST00000259818 2020 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
APOBP04114 AC104407.1-201ENST00000511017 1568 ntTSL 3 BASIC10.67□□□□□ -0.7
APOBP04114 IDUA-201ENST00000247933 2163 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
APOBP04114 RABL2A-204ENST00000393167 2179 ntAPPRIS P3 TSL 1 (best) BASIC10.67□□□□□ -0.7
APOBP04114 MXD3-202ENST00000427908 2269 ntTSL 2 BASIC10.67□□□□□ -0.7
APOBP04114 KIF1BP-201ENST00000361983 2544 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
APOBP04114 KLK14-202ENST00000391802 1133 ntAPPRIS P1 TSL 5 BASIC10.67□□□□□ -0.7
APOBP04114 COMMD4-207ENST00000562789 746 ntTSL 2 BASIC10.67□□□□□ -0.7
APOBP04114 AC132938.2-201ENST00000579188 680 ntBASIC10.67□□□□□ -0.7
APOBP04114 AC009118.2-201ENST00000613275 655 ntBASIC10.67□□□□□ -0.7
APOBP04114 RPSAP52-203ENST00000622976 1023 ntBASIC10.67□□□□□ -0.7
APOBP04114 AL591163.1-201ENST00000641757 987 ntBASIC10.67□□□□□ -0.7
APOBP04114 CGB7-202ENST00000596965 1949 ntAPPRIS P1 TSL 2 BASIC10.67□□□□□ -0.7
APOBP04114 ALDOC-201ENST00000226253 1982 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
APOBP04114 TAF15-211ENST00000604841 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC10.66□□□□□ -0.7
APOBP04114 WDR4-201ENST00000330317 1471 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
APOBP04114 ZNF138-201ENST00000307355 1141 ntAPPRIS ALT2 TSL 4 BASIC10.66□□□□□ -0.7
APOBP04114 AP001471.1-201ENST00000454245 672 ntTSL 3 BASIC10.66□□□□□ -0.7
APOBP04114 AC243964.2-202ENST00000591312 752 ntTSL 2 BASIC10.66□□□□□ -0.7
APOBP04114 CALM1-216ENST00000626705 1341 ntTSL 5 BASIC10.66□□□□□ -0.7
APOBP04114 LAMP1-201ENST00000332556 2699 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
APOBP04114 WDR45-234ENST00000634838 1545 ntTSL 5 BASIC10.66□□□□□ -0.7
APOBP04114 CPQ-201ENST00000220763 1947 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
APOBP04114 SCP2-202ENST00000371513 2003 ntTSL 1 (best) BASIC10.66□□□□□ -0.7
APOBP04114 DACT2-204ENST00000610183 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC10.66□□□□□ -0.7
APOBP04114 MEN1-205ENST00000377316 2868 ntTSL 5 BASIC10.66□□□□□ -0.7
APOBP04114 CIB3-202ENST00000379859 467 ntTSL 1 (best) BASIC10.66□□□□□ -0.7
APOBP04114 PRDM8-202ENST00000415738 3124 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
APOBP04114 CDH23-AS1-201ENST00000428918 378 ntTSL 2 BASIC10.66□□□□□ -0.7
APOBP04114 YTHDC2-207ENST00000515883 2629 ntTSL 1 (best) BASIC10.66□□□□□ -0.7
APOBP04114 RAB30-AS1-202ENST00000526795 567 ntTSL 5 BASIC10.66□□□□□ -0.7
APOBP04114 ARL6IP1-202ENST00000546206 1107 ntTSL 2 BASIC10.66□□□□□ -0.7
APOBP04114 AL138828.1-202ENST00000576956 1881 ntTSL 5 BASIC10.66□□□□□ -0.7
APOBP04114 CCDC28A-202ENST00000611852 1505 ntTSL 1 (best) BASIC10.66□□□□□ -0.7
APOBP04114 TPCN2-209ENST00000637504 2736 ntTSL 5 BASIC10.66□□□□□ -0.7
APOBP04114 AC087457.1-201ENST00000503496 2727 ntTSL 2 BASIC10.66□□□□□ -0.7
APOBP04114 ST3GAL4-217ENST00000534083 1919 ntAPPRIS ALT1 TSL 5 BASIC10.66□□□□□ -0.7
APOBP04114 VAV1-204ENST00000596764 2775 ntTSL 2 BASIC10.66□□□□□ -0.7
APOBP04114 SLC38A10-201ENST00000288439 2708 ntAPPRIS P3 TSL 1 (best) BASIC10.66□□□□□ -0.7
APOBP04114 PALM-202ENST00000338448 2725 ntAPPRIS P4 TSL 1 (best) BASIC10.66□□□□□ -0.7
APOBP04114 DOK1-201ENST00000233668 2555 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
APOBP04114 MAP9-202ENST00000379248 1165 ntTSL 1 (best) BASIC10.66□□□□□ -0.7
APOBP04114 AQP7-204ENST00000379506 1062 ntTSL 2 BASIC10.66□□□□□ -0.7
APOBP04114 FAM166B-201ENST00000399742 958 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
APOBP04114 BX276092.7-202ENST00000422194 696 ntTSL 3 BASIC10.66□□□□□ -0.7
APOBP04114 DLX2-AS1-201ENST00000448117 950 ntTSL 5 BASIC10.66□□□□□ -0.7
APOBP04114 C8orf46-213ENST00000521495 557 ntTSL 4 BASIC10.66□□□□□ -0.7
APOBP04114 AC008735.3-201ENST00000596646 500 ntBASIC10.66□□□□□ -0.7
APOBP04114 H2BFM-203ENST00000598335 465 ntAPPRIS P1 TSL 5 BASIC10.66□□□□□ -0.7
APOBP04114 LRRC71-201ENST00000337428 1959 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
APOBP04114 SLC2A8-202ENST00000373360 1937 ntTSL 1 (best) BASIC10.66□□□□□ -0.7
APOBP04114 SAMD14-203ENST00000503131 1938 ntTSL 1 (best) BASIC10.66□□□□□ -0.7
APOBP04114 EFS-202ENST00000351354 2704 ntTSL 1 (best) BASIC10.66□□□□□ -0.7
APOBP04114 KLK15-201ENST00000326856 1389 ntAPPRIS ALT1 TSL 5 BASIC10.65□□□□□ -0.7
APOBP04114 AC013275.1-201ENST00000413602 2019 ntTSL 1 (best) BASIC10.65□□□□□ -0.7
APOBP04114 NFATC4-228ENST00000556759 2025 ntTSL 1 (best) BASIC10.65□□□□□ -0.7
APOBP04114 FZD8-201ENST00000374694 4030 ntAPPRIS P1 BASIC10.65□□□□□ -0.7
APOBP04114 IL10RB-201ENST00000290200 1963 ntAPPRIS P1 TSL 1 (best) BASIC10.65□□□□□ -0.7
APOBP04114 METRNL-203ENST00000571814 1900 ntTSL 1 (best) BASIC10.65□□□□□ -0.7
APOBP04114 MPV17-208ENST00000405076 603 ntTSL 5 BASIC10.65□□□□□ -0.7
APOBP04114 RHCE-206ENST00000413854 1198 ntTSL 1 (best) BASIC10.65□□□□□ -0.7
APOBP04114 GALT-202ENST00000450095 1280 ntTSL 2 BASIC10.65□□□□□ -0.7
APOBP04114 RN7SL837P-201ENST00000463010 287 ntBASIC10.65□□□□□ -0.7
APOBP04114 LY6E-204ENST00000519546 971 ntTSL 2 BASIC10.65□□□□□ -0.7
APOBP04114 IGHV3-52-201ENST00000519770 353 ntBASIC10.65□□□□□ -0.7
APOBP04114 AC137894.1-201ENST00000526431 547 ntTSL 2 BASIC10.65□□□□□ -0.7
Retrieved 100 of 98,524 protein–RNA pairs in 31.7 ms