Protein–RNA interactions for Protein: P02649

APOE, Apolipoprotein E, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOEP02649 SLC8A3-203ENST00000357887 5259 ntTSL 5 BASIC18.21■□□□□ 0.51
APOEP02649 SLC8A3-204ENST00000381269 5268 ntAPPRIS ALT1 TSL 1 (best) BASIC18.21■□□□□ 0.51
APOEP02649 CBWD1-202ENST00000356521 1706 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
APOEP02649 EWSR1-202ENST00000332035 1989 ntAPPRIS ALT2 TSL 2 BASIC18.21■□□□□ 0.51
APOEP02649 LRRFIP2-209ENST00000440230 1989 ntTSL 5 BASIC18.21■□□□□ 0.51
APOEP02649 P2RX5-209ENST00000552276 1642 ntAPPRIS ALT2 TSL 5 BASIC18.21■□□□□ 0.51
APOEP02649 LSR-212ENST00000602122 2480 ntAPPRIS ALT2 TSL 2 BASIC18.21■□□□□ 0.51
APOEP02649 NTRK2-207ENST00000376214 5608 ntAPPRIS P3 TSL 5 BASIC18.21■□□□□ 0.51
APOEP02649 ABCC3-202ENST00000427699 1881 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
APOEP02649 SPNS1-202ENST00000323081 2102 ntTSL 2 BASIC18.21■□□□□ 0.51
APOEP02649 MRPL52-202ENST00000355151 1118 ntAPPRIS ALT1 TSL 1 (best) BASIC18.21■□□□□ 0.51
APOEP02649 KLK14-202ENST00000391802 1133 ntAPPRIS P1 TSL 5 BASIC18.21■□□□□ 0.51
APOEP02649 MRPL52-203ENST00000397496 1111 ntAPPRIS P3 TSL 2 BASIC18.21■□□□□ 0.51
APOEP02649 HIST2H3DP1-201ENST00000401004 416 ntBASIC18.21■□□□□ 0.51
APOEP02649 SLC9A3R1-202ENST00000413388 1285 ntTSL 2 BASIC18.21■□□□□ 0.51
APOEP02649 MCCC2-205ENST00000509358 1214 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
APOEP02649 KLK12-203ENST00000525263 1077 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
APOEP02649 GSTZ1-207ENST00000553586 979 ntAPPRIS ALT1 TSL 5 BASIC18.21■□□□□ 0.51
APOEP02649 AC106782.2-201ENST00000563252 992 ntTSL 3 BASIC18.21■□□□□ 0.51
APOEP02649 LINC01956-202ENST00000584273 612 ntTSL 3 BASIC18.21■□□□□ 0.51
APOEP02649 FAM25C-201ENST00000617224 319 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
APOEP02649 TST-204ENST00000622841 1105 ntAPPRIS P1 TSL 5 BASIC18.21■□□□□ 0.51
APOEP02649 AL139288.1-201ENST00000623748 933 ntBASIC18.21■□□□□ 0.51
APOEP02649 SYNE3-202ENST00000553340 2615 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
APOEP02649 PTPRU-202ENST00000373779 5579 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
APOEP02649 PIP5K1A-207ENST00000441902 2297 ntTSL 2 BASIC18.21■□□□□ 0.51
APOEP02649 SBNO2-204ENST00000587024 4861 ntAPPRIS ALT2 TSL 2 BASIC18.21■□□□□ 0.51
APOEP02649 STAP2-201ENST00000594605 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
APOEP02649 SLC12A9-202ENST00000415287 1912 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
APOEP02649 AL356309.3-201ENST00000624132 1934 ntBASIC18.21■□□□□ 0.51
APOEP02649 MAPK11-201ENST00000330651 2431 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
APOEP02649 CDKN1B-201ENST00000228872 2657 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
APOEP02649 SPATC1L-201ENST00000291672 2303 ntAPPRIS P1 TSL 2 BASIC18.21■□□□□ 0.51
APOEP02649 GPR149-201ENST00000389740 2323 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
APOEP02649 PCCB-207ENST00000466072 1844 ntAPPRIS ALT2 TSL 3 BASIC18.21■□□□□ 0.51
APOEP02649 BCS1L-202ENST00000392109 1583 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
APOEP02649 BCS1L-204ENST00000392111 1584 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
APOEP02649 BBC3-201ENST00000300880 1347 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
APOEP02649 ZNF281-201ENST00000294740 4891 ntAPPRIS P3 TSL 1 (best) BASIC18.21■□□□□ 0.5
APOEP02649 SNX1-208ENST00000559844 1971 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.5
APOEP02649 ZNF211-211ENST00000541801 2629 ntAPPRIS ALT2 TSL 3 BASIC18.2■□□□□ 0.5
APOEP02649 ESYT2-206ENST00000613624 2766 ntAPPRIS ALT2 TSL 2 BASIC18.2■□□□□ 0.5
APOEP02649 N4BP2L1-210ENST00000613078 2032 ntTSL 5 BASIC18.2■□□□□ 0.5
APOEP02649 NAA50-209ENST00000497525 1385 ntTSL 2 BASIC18.2■□□□□ 0.5
APOEP02649 C16orf70-208ENST00000569600 1353 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
APOEP02649 NEIL1-221ENST00000569035 1797 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
APOEP02649 AL355312.1-201ENST00000407115 2176 ntBASIC18.2■□□□□ 0.5
APOEP02649 MCU-201ENST00000357157 2874 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
APOEP02649 EPB41L5-203ENST00000443124 2872 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
APOEP02649 SWSAP1-201ENST00000312423 1684 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
APOEP02649 BCL11B-202ENST00000357195 7559 ntAPPRIS P4 TSL 1 (best) BASIC18.2■□□□□ 0.5
APOEP02649 RNASEH2A-201ENST00000221486 1165 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
APOEP02649 DCTN3-201ENST00000259632 808 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
APOEP02649 ZNHIT1-201ENST00000305105 1225 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
APOEP02649 MAL-203ENST00000353004 873 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
APOEP02649 DNASE1L2-202ENST00000382437 1222 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
APOEP02649 UPK3A-202ENST00000396082 627 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
APOEP02649 AC135586.2-201ENST00000537262 567 ntAPPRIS P1 TSL 4 BASIC18.2■□□□□ 0.5
APOEP02649 AC087645.2-201ENST00000586321 799 ntTSL 3 BASIC18.2■□□□□ 0.5
APOEP02649 PIEZO1-201ENST00000301015 8072 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
APOEP02649 SVOPL-204ENST00000436657 1420 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
APOEP02649 ZNF48-205ENST00000613509 3339 ntAPPRIS P1 TSL 2 BASIC18.2■□□□□ 0.5
APOEP02649 CASZ1-202ENST00000377022 7936 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
APOEP02649 TXNL4A-201ENST00000269601 3504 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
APOEP02649 LINC00304-203ENST00000565008 1864 ntBASIC18.2■□□□□ 0.5
APOEP02649 MIB2-201ENST00000355826 3290 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
APOEP02649 USH1C-205ENST00000527020 2159 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
APOEP02649 MARCH1-203ENST00000503008 5877 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
APOEP02649 LINC01554-202ENST00000436592 2052 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
APOEP02649 DUS3L-201ENST00000309061 2113 ntAPPRIS P3 TSL 1 (best) BASIC18.19■□□□□ 0.5
APOEP02649 NTRK2-206ENST00000376213 5560 ntAPPRIS ALT1 TSL 5 BASIC18.19■□□□□ 0.5
APOEP02649 ASIC3-201ENST00000297512 1718 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
APOEP02649 TAOK2-202ENST00000308893 5169 ntAPPRIS P4 TSL 1 (best) BASIC18.19■□□□□ 0.5
APOEP02649 FAM3A-205ENST00000393572 1041 ntTSL 2 BASIC18.19■□□□□ 0.5
APOEP02649 ECE2-205ENST00000404464 3229 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
APOEP02649 DMKN-206ENST00000418261 1257 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
APOEP02649 BLOC1S1-204ENST00000549147 1229 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
APOEP02649 GABRG3-206ENST00000555083 1405 ntTSL 2 BASIC18.19■□□□□ 0.5
APOEP02649 AL160237.2-201ENST00000556165 472 ntBASIC18.19■□□□□ 0.5
APOEP02649 AC010186.2-201ENST00000575094 2612 ntTSL 2 BASIC18.19■□□□□ 0.5
APOEP02649 STK25P1-201ENST00000585406 838 ntBASIC18.19■□□□□ 0.5
APOEP02649 AC020909.1-201ENST00000599632 1265 ntAPPRIS P1 TSL 5 BASIC18.19■□□□□ 0.5
APOEP02649 DUSP4-201ENST00000240100 5537 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
APOEP02649 PRKAG1-206ENST00000548065 2071 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
APOEP02649 HLA-J-201ENST00000462773 1622 ntBASIC18.19■□□□□ 0.5
APOEP02649 AC079776.2-201ENST00000641154 1609 ntBASIC18.19■□□□□ 0.5
APOEP02649 BAGE2-202ENST00000474011 1482 ntTSL 2 BASIC18.19■□□□□ 0.5
APOEP02649 AC105411.1-202ENST00000565050 1476 ntTSL 5 BASIC18.19■□□□□ 0.5
APOEP02649 SDR39U1-206ENST00000553930 1325 ntTSL 5 BASIC18.19■□□□□ 0.5
APOEP02649 RCC1-202ENST00000373832 2424 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
APOEP02649 RSBN1-205ENST00000615321 2418 ntTSL 2 BASIC18.19■□□□□ 0.5
APOEP02649 SREK1-216ENST00000612404 2128 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
APOEP02649 LANCL3-201ENST00000378619 3063 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
APOEP02649 UQCRC1-201ENST00000203407 1985 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
APOEP02649 SH2D3C-213ENST00000629203 2478 ntTSL 2 BASIC18.18■□□□□ 0.5
APOEP02649 ARHGAP26-202ENST00000378004 9200 ntAPPRIS ALT1 TSL 1 (best) BASIC18.18■□□□□ 0.5
APOEP02649 PSMA1-209ENST00000530457 1527 ntTSL 5 BASIC18.18■□□□□ 0.5
APOEP02649 IL27RA-201ENST00000263379 2962 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
APOEP02649 KLC2-201ENST00000316924 2990 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
APOEP02649 MICA-209ENST00000449934 1386 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 26.8 ms