Protein–RNA interactions for Protein: O60260

PRKN, E3 ubiquitin-protein ligase parkin, humanhuman

Predicted RBP Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKNO60260 KCTD20-210ENST00000536244 5345 ntTSL 2 BASIC16.16■□□□□ 0.18
PRKNO60260 ETV4-205ENST00000545954 1775 ntTSL 2 BASIC16.16■□□□□ 0.18
PRKNO60260 SREBF2-201ENST00000361204 5240 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
PRKNO60260 SPC24-206ENST00000592540 2315 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
PRKNO60260 CFAP100-201ENST00000352312 2086 ntAPPRIS P2 TSL 2 BASIC16.16■□□□□ 0.18
PRKNO60260 GOSR2-201ENST00000225567 1245 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
PRKNO60260 SMARCC2-202ENST00000347471 3839 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
PRKNO60260 PSMA7-203ENST00000370873 996 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
PRKNO60260 MRPL23-201ENST00000381514 919 ntTSL 3 BASIC16.16■□□□□ 0.18
PRKNO60260 MOGAT1-201ENST00000446656 1048 ntAPPRIS P1 TSL 5 BASIC16.16■□□□□ 0.18
PRKNO60260 AC034243.1-201ENST00000520838 587 ntTSL 2 BASIC16.16■□□□□ 0.18
PRKNO60260 NCAM1-AS1-202ENST00000533638 618 ntTSL 4 BASIC16.16■□□□□ 0.18
PRKNO60260 ARAP1-AS1-201ENST00000542022 388 ntTSL 5 BASIC16.16■□□□□ 0.18
PRKNO60260 AL589182.1-202ENST00000548416 533 ntTSL 4 BASIC16.16■□□□□ 0.18
PRKNO60260 PRSS8-206ENST00000568261 1214 ntTSL 2 BASIC16.16■□□□□ 0.18
PRKNO60260 SDCCAG3P1-201ENST00000589292 1150 ntBASIC16.16■□□□□ 0.18
PRKNO60260 CIRBP-235ENST00000591935 746 ntAPPRIS ALT1 TSL 3 BASIC16.16■□□□□ 0.18
PRKNO60260 AC008878.2-201ENST00000601870 942 ntAPPRIS P1 TSL 4 BASIC16.16■□□□□ 0.18
PRKNO60260 AL512343.2-201ENST00000609423 490 ntTSL 2 BASIC16.16■□□□□ 0.18
PRKNO60260 AL139327.4-201ENST00000612362 153 ntBASIC16.16■□□□□ 0.18
PRKNO60260 AC107918.4-202ENST00000641623 219 ntBASIC16.16■□□□□ 0.18
PRKNO60260 FGFR4-207ENST00000502906 2638 ntAPPRIS P4 TSL 1 (best) BASIC16.16■□□□□ 0.18
PRKNO60260 CCDC120-204ENST00000597275 2752 ntAPPRIS P3 TSL 2 BASIC16.16■□□□□ 0.18
PRKNO60260 P2RY6-202ENST00000393590 2398 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
PRKNO60260 OGG1-206ENST00000349503 1950 ntTSL 5 BASIC16.16■□□□□ 0.18
PRKNO60260 CASKIN2-201ENST00000321617 5015 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
PRKNO60260 TRAF2-201ENST00000247668 2264 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
PRKNO60260 CDC42EP3-201ENST00000295324 5700 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
PRKNO60260 PLEKHG6-203ENST00000396988 2963 ntAPPRIS P1 TSL 2 BASIC16.16■□□□□ 0.18
PRKNO60260 ZYG11A-203ENST00000612017 3682 ntTSL 5 BASIC16.16■□□□□ 0.18
PRKNO60260 TRAPPC3-209ENST00000616395 1336 ntTSL 3 BASIC16.16■□□□□ 0.18
PRKNO60260 PRSS36-207ENST00000569305 2723 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
PRKNO60260 ISLR2-203ENST00000435464 4259 ntAPPRIS P1 TSL 2 BASIC16.16■□□□□ 0.18
PRKNO60260 TTC29-201ENST00000325106 1785 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.18
PRKNO60260 PPT2-246ENST00000375137 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
PRKNO60260 ZNF200-202ENST00000396870 2373 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
PRKNO60260 C8orf33-201ENST00000331434 2677 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
PRKNO60260 GPER1-204ENST00000401670 1542 ntAPPRIS P1 TSL 2 BASIC16.15■□□□□ 0.18
PRKNO60260 GCAT-202ENST00000323205 1656 ntTSL 2 BASIC16.15■□□□□ 0.18
PRKNO60260 SGCE-206ENST00000445866 1666 ntTSL 5 BASIC16.15■□□□□ 0.18
PRKNO60260 LYPLA2-205ENST00000374514 1810 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
PRKNO60260 AC026954.2-202ENST00000575474 2571 ntAPPRIS P5 TSL 5 BASIC16.15■□□□□ 0.18
PRKNO60260 HNRNPUL1-203ENST00000378215 2864 ntTSL 2 BASIC16.15■□□□□ 0.18
PRKNO60260 SENP2-201ENST00000296257 5717 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
PRKNO60260 MRPL28-201ENST00000199706 1098 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
PRKNO60260 LGALS1-201ENST00000215909 560 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
PRKNO60260 PRR14-202ENST00000300835 2198 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
PRKNO60260 SMIM29-201ENST00000335352 1160 ntTSL 2 BASIC16.15■□□□□ 0.18
PRKNO60260 TOR3A-201ENST00000352445 1182 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
PRKNO60260 MYCLP1-201ENST00000372451 1075 ntBASIC16.15■□□□□ 0.18
PRKNO60260 CYP2D6-204ENST00000389970 1714 ntTSL 5 BASIC16.15■□□□□ 0.18
PRKNO60260 ESR1-204ENST00000406599 1251 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
PRKNO60260 SIGLEC30P-201ENST00000455569 941 ntBASIC16.15■□□□□ 0.18
PRKNO60260 NDUFB2-209ENST00000472695 503 ntTSL 5 BASIC16.15■□□□□ 0.18
PRKNO60260 HOXB-AS4-202ENST00000480386 566 ntTSL 4 BASIC16.15■□□□□ 0.18
PRKNO60260 MSRA-206ENST00000521209 814 ntTSL 3 BASIC16.15■□□□□ 0.18
PRKNO60260 SPINT1-AS1-203ENST00000565315 629 ntTSL 2 BASIC16.15■□□□□ 0.18
PRKNO60260 MIEN1-205ENST00000577810 806 ntTSL 3 BASIC16.15■□□□□ 0.18
PRKNO60260 LINC01197-204ENST00000611265 956 ntTSL 5 BASIC16.15■□□□□ 0.18
PRKNO60260 GPX4-212ENST00000616066 924 ntAPPRIS ALT1 TSL 5 BASIC16.15■□□□□ 0.18
PRKNO60260 NPTN-202ENST00000351217 2817 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
PRKNO60260 TFEB-201ENST00000230323 2354 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
PRKNO60260 KRT79-201ENST00000330553 2068 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
PRKNO60260 LTBP4-203ENST00000308370 4948 ntAPPRIS P4 TSL 1 (best) BASIC16.15■□□□□ 0.18
PRKNO60260 PML-221ENST00000569965 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
PRKNO60260 NMD3-202ENST00000460469 3061 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
PRKNO60260 PCCB-209ENST00000469217 1841 ntAPPRIS ALT2 TSL 2 BASIC16.15■□□□□ 0.18
PRKNO60260 MBD4-202ENST00000393278 1684 ntTSL 1 (best) BASIC16.14■□□□□ 0.18
PRKNO60260 HAPLN3-204ENST00000562889 1547 ntTSL 5 BASIC16.14■□□□□ 0.18
PRKNO60260 IRF5-210ENST00000477535 1374 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
PRKNO60260 SCARB2-223ENST00000640640 4608 ntTSL 5 BASIC16.14■□□□□ 0.17
PRKNO60260 CBL-204ENST00000634840 4813 ntAPPRIS ALT2 TSL 5 BASIC16.14■□□□□ 0.17
PRKNO60260 NUDT9-201ENST00000302174 1701 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
PRKNO60260 KCNQ2-215ENST00000629241 2853 ntTSL 5 BASIC16.14■□□□□ 0.17
PRKNO60260 CSNK1D-204ENST00000398519 1580 ntTSL 5 BASIC16.14■□□□□ 0.17
PRKNO60260 ADARB1-204ENST00000389863 3563 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
PRKNO60260 SLCO6A1-201ENST00000379807 2437 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
PRKNO60260 ZNF846-205ENST00000588267 1943 ntTSL 2 BASIC16.14■□□□□ 0.17
PRKNO60260 NLE1-203ENST00000586869 5286 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
PRKNO60260 WNT10B-201ENST00000301061 2274 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
PRKNO60260 AC104809.2-201ENST00000418218 2274 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
PRKNO60260 NINL-201ENST00000278886 4969 ntAPPRIS P3 TSL 1 (best) BASIC16.14■□□□□ 0.17
PRKNO60260 HHATL-201ENST00000310417 1750 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
PRKNO60260 TTC29-205ENST00000504425 1777 ntAPPRIS ALT2 TSL 5 BASIC16.14■□□□□ 0.17
PRKNO60260 TNIP1-221ENST00000610874 2629 ntTSL 5 BASIC16.14■□□□□ 0.17
PRKNO60260 FAM99B-201ENST00000382166 1067 ntTSL 5 BASIC16.14■□□□□ 0.17
PRKNO60260 HDAC11-202ENST00000402259 1000 ntTSL 3 BASIC16.14■□□□□ 0.17
PRKNO60260 CENPM-204ENST00000402420 688 ntTSL 5 BASIC16.14■□□□□ 0.17
PRKNO60260 RMDN1-202ENST00000430676 1106 ntTSL 2 BASIC16.14■□□□□ 0.17
PRKNO60260 AP000688.4-201ENST00000436303 446 ntTSL 3 BASIC16.14■□□□□ 0.17
PRKNO60260 NTMT1-205ENST00000459968 1123 ntTSL 2 BASIC16.14■□□□□ 0.17
PRKNO60260 HFE-210ENST00000470149 1123 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
PRKNO60260 NTMT1-207ENST00000482347 1072 ntTSL 2 BASIC16.14■□□□□ 0.17
PRKNO60260 YPEL3-209ENST00000566595 796 ntAPPRIS P1 TSL 2 BASIC16.14■□□□□ 0.17
PRKNO60260 FAM20A-205ENST00000592554 2955 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
PRKNO60260 PRKN-208ENST00000610470 531 ntTSL 2 BASIC16.14■□□□□ 0.17
PRKNO60260 PRKN-209ENST00000612485 225 ntTSL 5 BASIC16.14■□□□□ 0.17
PRKNO60260 NXNL2-205ENST00000618633 739 ntTSL 5 BASIC16.14■□□□□ 0.17
PRKNO60260 HOXA11-AS1_5.1-201ENST00000620211 203 ntBASIC16.14■□□□□ 0.17
PRKNO60260 AC116407.3-201ENST00000623905 1129 ntBASIC16.14■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 26.8 ms