Protein–RNA interactions for Protein: Q9Y5X1

SNX9, Sorting nexin-9, humanhuman

Predictions only

Length 595 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SNX9Q9Y5X1 PPM1M-202ENST00000323588 2193 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SNX9Q9Y5X1 CELA2A-201ENST00000359621 919 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SNX9Q9Y5X1 CMTM2-202ENST00000379486 904 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
SNX9Q9Y5X1 CENPM-204ENST00000402420 688 ntTSL 5 BASIC18.6■□□□□ 0.57
SNX9Q9Y5X1 LINC00982-205ENST00000420957 435 ntBASIC18.6■□□□□ 0.57
SNX9Q9Y5X1 AC067930.3-201ENST00000524808 701 ntTSL 3 BASIC18.6■□□□□ 0.57
SNX9Q9Y5X1 BLOC1S6-202ENST00000562384 494 ntTSL 4 BASIC18.6■□□□□ 0.57
SNX9Q9Y5X1 AC018529.2-201ENST00000612024 828 ntTSL 4 BASIC18.6■□□□□ 0.57
SNX9Q9Y5X1 SMIM22-210ENST00000615471 928 ntAPPRIS ALT2 TSL 3 BASIC18.6■□□□□ 0.57
SNX9Q9Y5X1 BX640515.1-201ENST00000617215 977 ntBASIC18.6■□□□□ 0.57
SNX9Q9Y5X1 AC004706.3-202ENST00000621574 984 ntBASIC18.6■□□□□ 0.57
SNX9Q9Y5X1 LGMN-201ENST00000334869 2055 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SNX9Q9Y5X1 CLDN9-201ENST00000445369 2050 ntAPPRIS P1 BASIC18.6■□□□□ 0.57
SNX9Q9Y5X1 NLE1-203ENST00000586869 5286 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
SNX9Q9Y5X1 SREBF2-201ENST00000361204 5240 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SNX9Q9Y5X1 GCDH-201ENST00000222214 1956 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SNX9Q9Y5X1 CXXC1P1-201ENST00000483225 1897 ntTSL 2 BASIC18.6■□□□□ 0.57
SNX9Q9Y5X1 TFCP2-204ENST00000548115 1862 ntTSL 5 BASIC18.6■□□□□ 0.57
SNX9Q9Y5X1 ARHGAP22-206ENST00000435790 2595 ntAPPRIS ALT2 TSL 2 BASIC18.6■□□□□ 0.57
SNX9Q9Y5X1 NR2C2-206ENST00000425241 2494 ntAPPRIS P1 TSL 2 BASIC18.6■□□□□ 0.57
SNX9Q9Y5X1 ARHGEF18-201ENST00000319670 5212 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
SNX9Q9Y5X1 PHRF1-205ENST00000533464 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
SNX9Q9Y5X1 ZNF589-203ENST00000427617 1677 ntTSL 2 BASIC18.6■□□□□ 0.57
SNX9Q9Y5X1 AC068888.1-203ENST00000546566 1650 ntTSL 2 BASIC18.6■□□□□ 0.57
SNX9Q9Y5X1 VPS37A-201ENST00000324849 4906 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SNX9Q9Y5X1 CCT4-204ENST00000544079 2261 ntTSL 2 BASIC18.6■□□□□ 0.57
SNX9Q9Y5X1 TJP3-205ENST00000587686 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
SNX9Q9Y5X1 TMEM110-201ENST00000355083 4769 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SNX9Q9Y5X1 TRH-202ENST00000507066 1580 ntAPPRIS ALT1 TSL 5 BASIC18.59■□□□□ 0.57
SNX9Q9Y5X1 RNF34-201ENST00000361234 2066 ntAPPRIS ALT1 TSL 1 (best) BASIC18.59■□□□□ 0.57
SNX9Q9Y5X1 ALDH5A1-202ENST00000357578 5248 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
SNX9Q9Y5X1 FGFR4-202ENST00000393637 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
SNX9Q9Y5X1 PACSIN2-203ENST00000402229 1883 ntAPPRIS P1 TSL 5 BASIC18.59■□□□□ 0.57
SNX9Q9Y5X1 TMEM198-201ENST00000344458 2393 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
SNX9Q9Y5X1 DHDH-201ENST00000221403 1081 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
SNX9Q9Y5X1 TCEAL2-202ENST00000372780 1100 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
SNX9Q9Y5X1 TRIM36-203ENST00000379618 693 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
SNX9Q9Y5X1 CSF3-203ENST00000394148 622 ntTSL 3 BASIC18.59■□□□□ 0.57
SNX9Q9Y5X1 NDUFB2-208ENST00000471136 499 ntTSL 3 BASIC18.59■□□□□ 0.57
SNX9Q9Y5X1 AC091180.3-201ENST00000506504 963 ntTSL 3 BASIC18.59■□□□□ 0.57
SNX9Q9Y5X1 AP006621.3-203ENST00000525941 610 ntTSL 2 BASIC18.59■□□□□ 0.57
SNX9Q9Y5X1 AC068389.2-201ENST00000529518 430 ntTSL 2 BASIC18.59■□□□□ 0.57
SNX9Q9Y5X1 C12orf76-202ENST00000546627 461 ntTSL 4 BASIC18.59■□□□□ 0.57
SNX9Q9Y5X1 HEXA-210ENST00000567213 1000 ntTSL 3 BASIC18.59■□□□□ 0.57
SNX9Q9Y5X1 PDCD2L-203ENST00000587065 492 ntTSL 3 BASIC18.59■□□□□ 0.57
SNX9Q9Y5X1 AC008878.2-201ENST00000601870 942 ntAPPRIS P1 TSL 4 BASIC18.59■□□□□ 0.57
SNX9Q9Y5X1 CHMP4A-211ENST00000609024 735 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
SNX9Q9Y5X1 HOXA11-AS1_5.1-201ENST00000620211 203 ntBASIC18.59■□□□□ 0.57
SNX9Q9Y5X1 GFAP-203ENST00000435360 1779 ntTSL 2 BASIC18.59■□□□□ 0.57
SNX9Q9Y5X1 SPTBN4-202ENST00000352632 8676 ntAPPRIS P2 TSL 5 BASIC18.59■□□□□ 0.57
SNX9Q9Y5X1 TRIM17-204ENST00000366698 1748 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
SNX9Q9Y5X1 RDH8-203ENST00000591589 1715 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
SNX9Q9Y5X1 YIPF2-204ENST00000586748 1550 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
SNX9Q9Y5X1 LY6E-207ENST00000520466 1419 ntAPPRIS P2 TSL 2 BASIC18.58■□□□□ 0.57
SNX9Q9Y5X1 FLT1-201ENST00000282397 7092 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
SNX9Q9Y5X1 NOV-201ENST00000259526 2522 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
SNX9Q9Y5X1 SKOR1-202ENST00000380035 3675 ntAPPRIS ALT2 TSL 5 BASIC18.58■□□□□ 0.57
SNX9Q9Y5X1 RTKN2-203ENST00000395260 2076 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
SNX9Q9Y5X1 SUPT20H-203ENST00000360252 2843 ntAPPRIS P3 TSL 1 (best) BASIC18.58■□□□□ 0.57
SNX9Q9Y5X1 PSENEN-202ENST00000587708 1661 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
SNX9Q9Y5X1 RPP38-203ENST00000378202 1030 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
SNX9Q9Y5X1 GYG2P1-204ENST00000382966 639 ntTSL 3 BASIC18.58■□□□□ 0.56
SNX9Q9Y5X1 KRT18P27-201ENST00000427733 1299 ntBASIC18.58■□□□□ 0.56
SNX9Q9Y5X1 RPS15A-205ENST00000565420 802 ntAPPRIS P1 TSL 2 BASIC18.58■□□□□ 0.56
SNX9Q9Y5X1 NAA60-217ENST00000572942 1089 ntTSL 2 BASIC18.58■□□□□ 0.56
SNX9Q9Y5X1 AL139424.1-201ENST00000607572 797 ntBASIC18.58■□□□□ 0.56
SNX9Q9Y5X1 MAGI3-201ENST00000307546 6430 ntTSL 5 BASIC18.58■□□□□ 0.56
SNX9Q9Y5X1 PP7080-201ENST00000342584 1876 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
SNX9Q9Y5X1 LRCH2-201ENST00000317135 4929 ntAPPRIS P3 TSL 1 (best) BASIC18.58■□□□□ 0.56
SNX9Q9Y5X1 BCL2L11-201ENST00000308659 1522 ntAPPRIS ALT2 TSL 2 BASIC18.58■□□□□ 0.56
SNX9Q9Y5X1 LGMN-216ENST00000557434 1797 ntTSL 5 BASIC18.58■□□□□ 0.56
SNX9Q9Y5X1 FRS3-201ENST00000259748 2094 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
SNX9Q9Y5X1 CYBA-210ENST00000569359 1415 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
SNX9Q9Y5X1 LRRFIP2-209ENST00000440230 1989 ntTSL 5 BASIC18.57■□□□□ 0.56
SNX9Q9Y5X1 FOXP1-210ENST00000484350 1996 ntTSL 2 BASIC18.57■□□□□ 0.56
SNX9Q9Y5X1 MZF1-206ENST00000599369 2587 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
SNX9Q9Y5X1 CACNA1A-247ENST00000637769 8648 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
SNX9Q9Y5X1 SLC39A1-210ENST00000617697 2214 ntAPPRIS P1 TSL 5 BASIC18.57■□□□□ 0.56
SNX9Q9Y5X1 MFSD11-219ENST00000593181 1922 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
SNX9Q9Y5X1 FIP1L1-207ENST00000507922 1335 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
SNX9Q9Y5X1 SLC35F3-201ENST00000366617 2762 ntAPPRIS ALT1 TSL 1 (best) BASIC18.57■□□□□ 0.56
SNX9Q9Y5X1 LINC00894-202ENST00000425602 1597 ntTSL 2 BASIC18.57■□□□□ 0.56
SNX9Q9Y5X1 AC006504.4-201ENST00000592118 1568 ntBASIC18.57■□□□□ 0.56
SNX9Q9Y5X1 C1orf159-204ENST00000379339 2429 ntAPPRIS ALT2 TSL 2 BASIC18.57■□□□□ 0.56
SNX9Q9Y5X1 LAMTOR5-201ENST00000256644 868 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
SNX9Q9Y5X1 GSTZ1-202ENST00000349555 867 ntTSL 2 BASIC18.57■□□□□ 0.56
SNX9Q9Y5X1 MSANTD3-201ENST00000374885 786 ntTSL 2 BASIC18.57■□□□□ 0.56
SNX9Q9Y5X1 AC073621.1-201ENST00000392730 636 ntBASIC18.57■□□□□ 0.56
SNX9Q9Y5X1 AL022342.1-201ENST00000400363 863 ntBASIC18.57■□□□□ 0.56
SNX9Q9Y5X1 AC098831.1-202ENST00000438821 336 ntBASIC18.57■□□□□ 0.56
SNX9Q9Y5X1 LAMTOR5-204ENST00000483260 694 ntTSL 2 BASIC18.57■□□□□ 0.56
SNX9Q9Y5X1 AC034213.1-201ENST00000507681 806 ntTSL 3 BASIC18.57■□□□□ 0.56
SNX9Q9Y5X1 FIBP-212ENST00000533045 1173 ntTSL 5 BASIC18.57■□□□□ 0.56
SNX9Q9Y5X1 TMEM106C-214ENST00000550161 976 ntTSL 3 BASIC18.57■□□□□ 0.56
SNX9Q9Y5X1 RPS29-206ENST00000557111 488 ntTSL 2 BASIC18.57■□□□□ 0.56
SNX9Q9Y5X1 IER2-202ENST00000587885 1291 ntAPPRIS P1 TSL 3 BASIC18.57■□□□□ 0.56
SNX9Q9Y5X1 BABAM1-206ENST00000595632 966 ntAPPRIS ALT2 TSL 5 BASIC18.57■□□□□ 0.56
SNX9Q9Y5X1 LAMTOR5-206ENST00000602318 634 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
SNX9Q9Y5X1 AL356488.2-201ENST00000602755 427 ntBASIC18.57■□□□□ 0.56
SNX9Q9Y5X1 MIR1199-201ENST00000621445 119 ntBASIC18.57■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 58.7 ms