Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 PRICKLE2-AS1-203ENST00000476308 623 ntTSL 2 BASIC16.64■□□□□ 0.25
PCDHGA1Q9Y5H4 TMEM176B-206ENST00000492607 1265 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.25
PCDHGA1Q9Y5H4 IGLL5-201ENST00000526893 1050 ntAPPRIS P2 TSL 1 (best) BASIC16.64■□□□□ 0.25
PCDHGA1Q9Y5H4 IGLL5-202ENST00000531372 882 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
PCDHGA1Q9Y5H4 OR10S1-201ENST00000531945 1121 ntAPPRIS P2 BASIC16.64■□□□□ 0.25
PCDHGA1Q9Y5H4 AF131215.3-201ENST00000532453 639 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
PCDHGA1Q9Y5H4 JPH4-203ENST00000544177 1124 ntTSL 2 BASIC16.64■□□□□ 0.25
PCDHGA1Q9Y5H4 CYB561-216ENST00000582297 897 ntTSL 3 BASIC16.64■□□□□ 0.25
PCDHGA1Q9Y5H4 GPR42-202ENST00000597214 1182 ntAPPRIS P1 BASIC16.64■□□□□ 0.25
PCDHGA1Q9Y5H4 WNT1-202ENST00000613114 1278 ntTSL 5 BASIC16.64■□□□□ 0.25
PCDHGA1Q9Y5H4 OR10S1-202ENST00000641123 1121 ntAPPRIS ALT2 BASIC16.64■□□□□ 0.25
PCDHGA1Q9Y5H4 HLA-A-204ENST00000396634 1868 ntAPPRIS P1 BASIC16.64■□□□□ 0.25
PCDHGA1Q9Y5H4 ADRA1A-201ENST00000276393 2281 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
PCDHGA1Q9Y5H4 PTH2R-204ENST00000617735 2472 ntTSL 2 BASIC16.64■□□□□ 0.25
PCDHGA1Q9Y5H4 RPS6KA1-203ENST00000374166 3131 ntTSL 5 BASIC16.64■□□□□ 0.25
PCDHGA1Q9Y5H4 ESR2-201ENST00000267525 1518 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
PCDHGA1Q9Y5H4 PROK2-202ENST00000353065 1549 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
PCDHGA1Q9Y5H4 MANBAL-204ENST00000397151 1503 ntAPPRIS P1 TSL 3 BASIC16.64■□□□□ 0.25
PCDHGA1Q9Y5H4 MANBAL-205ENST00000397152 1539 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
PCDHGA1Q9Y5H4 SIRT6-203ENST00000594279 1507 ntTSL 3 BASIC16.64■□□□□ 0.25
PCDHGA1Q9Y5H4 NOMO3-202ENST00000399336 4356 ntAPPRIS P2 TSL 1 (best) BASIC16.64■□□□□ 0.25
PCDHGA1Q9Y5H4 ABCB9-202ENST00000344275 2394 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
PCDHGA1Q9Y5H4 SNX1-208ENST00000559844 1971 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
PCDHGA1Q9Y5H4 NPM1-201ENST00000296930 1758 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
PCDHGA1Q9Y5H4 BIRC7-201ENST00000217169 1368 ntAPPRIS P4 TSL 1 (best) BASIC16.64■□□□□ 0.25
PCDHGA1Q9Y5H4 CLDN6-201ENST00000328796 1369 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
PCDHGA1Q9Y5H4 SLC22A7-201ENST00000372574 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
PCDHGA1Q9Y5H4 TAB2-209ENST00000637181 4230 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
PCDHGA1Q9Y5H4 SHF-201ENST00000290894 2500 ntAPPRIS P3 TSL 2 BASIC16.63■□□□□ 0.25
PCDHGA1Q9Y5H4 TMEM179-201ENST00000341595 2513 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
PCDHGA1Q9Y5H4 USP48-204ENST00000400301 4309 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
PCDHGA1Q9Y5H4 ELOC-209ENST00000602840 2780 ntTSL 5 BASIC16.63■□□□□ 0.25
PCDHGA1Q9Y5H4 SPAG9-202ENST00000357122 4761 ntAPPRIS P2 TSL 1 (best) BASIC16.63■□□□□ 0.25
PCDHGA1Q9Y5H4 FKRP-202ENST00000391909 2801 ntAPPRIS P1 TSL 2 BASIC16.63■□□□□ 0.25
PCDHGA1Q9Y5H4 NPY-203ENST00000407573 705 ntAPPRIS P1 TSL 3 BASIC16.63■□□□□ 0.25
PCDHGA1Q9Y5H4 LINC00404-201ENST00000418660 428 ntTSL 2 BASIC16.63■□□□□ 0.25
PCDHGA1Q9Y5H4 AL022068.1-202ENST00000432171 794 ntTSL 3 BASIC16.63■□□□□ 0.25
PCDHGA1Q9Y5H4 RANGRF-203ENST00000439238 1140 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
PCDHGA1Q9Y5H4 SLC22A18-206ENST00000449793 1225 ntTSL 5 BASIC16.63■□□□□ 0.25
PCDHGA1Q9Y5H4 SERF1A-207ENST00000512649 846 ntTSL 2 BASIC16.63■□□□□ 0.25
PCDHGA1Q9Y5H4 LEPROTL1-203ENST00000518001 589 ntTSL 4 BASIC16.63■□□□□ 0.25
PCDHGA1Q9Y5H4 AC008127.1-201ENST00000548424 499 ntTSL 5 BASIC16.63■□□□□ 0.25
PCDHGA1Q9Y5H4 MRPL52-208ENST00000553711 586 ntTSL 3 BASIC16.63■□□□□ 0.25
PCDHGA1Q9Y5H4 AC217774.2-201ENST00000580347 560 ntTSL 4 BASIC16.63■□□□□ 0.25
PCDHGA1Q9Y5H4 AC002091.2-201ENST00000585297 402 ntTSL 2 BASIC16.63■□□□□ 0.25
PCDHGA1Q9Y5H4 AC108010.1-201ENST00000605862 1107 ntTSL 5 BASIC16.63■□□□□ 0.25
PCDHGA1Q9Y5H4 ACTL9-202ENST00000612068 1252 ntBASIC16.63■□□□□ 0.25
PCDHGA1Q9Y5H4 Z92544.3-201ENST00000624747 417 ntBASIC16.63■□□□□ 0.25
PCDHGA1Q9Y5H4 PRDM5-201ENST00000264808 5330 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
PCDHGA1Q9Y5H4 EVX1-202ENST00000496902 2955 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
PCDHGA1Q9Y5H4 AKAP17A-201ENST00000313871 3204 ntAPPRIS P2 TSL 1 (best) BASIC16.63■□□□□ 0.25
PCDHGA1Q9Y5H4 KIF1BP-201ENST00000361983 2544 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
PCDHGA1Q9Y5H4 AC129492.6-201ENST00000611383 1305 ntBASIC16.63■□□□□ 0.25
PCDHGA1Q9Y5H4 AC092919.2-201ENST00000623631 1645 ntBASIC16.63■□□□□ 0.25
PCDHGA1Q9Y5H4 SHC3-202ENST00000375835 9768 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
PCDHGA1Q9Y5H4 DMRT3-201ENST00000190165 2183 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
PCDHGA1Q9Y5H4 SIKE1-201ENST00000060969 2190 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
PCDHGA1Q9Y5H4 ZCCHC17-205ENST00000615916 1652 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
PCDHGA1Q9Y5H4 AL096828.2-201ENST00000567259 1965 ntBASIC16.62■□□□□ 0.25
PCDHGA1Q9Y5H4 CCT4-204ENST00000544079 2261 ntTSL 2 BASIC16.62■□□□□ 0.25
PCDHGA1Q9Y5H4 ASCC2-202ENST00000397771 2823 ntAPPRIS P1 TSL 5 BASIC16.62■□□□□ 0.25
PCDHGA1Q9Y5H4 FAM49B-214ENST00000519540 2021 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
PCDHGA1Q9Y5H4 SNAP47-202ENST00000366759 2362 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
PCDHGA1Q9Y5H4 LINC00313-201ENST00000332440 579 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
PCDHGA1Q9Y5H4 TRAPPC3-203ENST00000373163 951 ntTSL 3 BASIC16.62■□□□□ 0.25
PCDHGA1Q9Y5H4 VCX3A-201ENST00000381089 995 ntAPPRIS P2 TSL 1 (best) BASIC16.62■□□□□ 0.25
PCDHGA1Q9Y5H4 AL137003.1-201ENST00000423260 491 ntTSL 5 BASIC16.62■□□□□ 0.25
PCDHGA1Q9Y5H4 AL022316.1-201ENST00000428765 572 ntTSL 4 BASIC16.62■□□□□ 0.25
PCDHGA1Q9Y5H4 CNN2P2-201ENST00000443536 909 ntBASIC16.62■□□□□ 0.25
PCDHGA1Q9Y5H4 TMEM205-202ENST00000447337 916 ntAPPRIS P1 TSL 2 BASIC16.62■□□□□ 0.25
PCDHGA1Q9Y5H4 CNN2P3-201ENST00000450201 906 ntBASIC16.62■□□□□ 0.25
PCDHGA1Q9Y5H4 TIMM8BP1-201ENST00000452384 211 ntBASIC16.62■□□□□ 0.25
PCDHGA1Q9Y5H4 CTBP1-AS2-204ENST00000514984 533 ntTSL 4 BASIC16.62■□□□□ 0.25
PCDHGA1Q9Y5H4 AKR1E2-212ENST00000532248 844 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
PCDHGA1Q9Y5H4 AC069262.1-201ENST00000539058 672 ntBASIC16.62■□□□□ 0.25
PCDHGA1Q9Y5H4 RPL28-209ENST00000560055 670 ntTSL 3 BASIC16.62■□□□□ 0.25
PCDHGA1Q9Y5H4 AC005759.1-201ENST00000594805 855 ntTSL 3 BASIC16.62■□□□□ 0.25
PCDHGA1Q9Y5H4 LINC00623-204ENST00000617702 746 ntTSL 5 BASIC16.62■□□□□ 0.25
PCDHGA1Q9Y5H4 AL136317.3-201ENST00000618497 906 ntBASIC16.62■□□□□ 0.25
PCDHGA1Q9Y5H4 ADCY6-206ENST00000550422 5877 ntTSL 2 BASIC16.62■□□□□ 0.25
PCDHGA1Q9Y5H4 ASIC3-202ENST00000349064 1895 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
PCDHGA1Q9Y5H4 FOXP4-202ENST00000373057 3300 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
PCDHGA1Q9Y5H4 ANKRD18DP-201ENST00000335478 2171 ntTSL 2 BASIC16.62■□□□□ 0.25
PCDHGA1Q9Y5H4 INAVA-202ENST00000413687 2197 ntAPPRIS P2 TSL 2 BASIC16.62■□□□□ 0.25
PCDHGA1Q9Y5H4 UNKL-204ENST00000389221 5116 ntAPPRIS ALT2 TSL 5 BASIC16.62■□□□□ 0.25
PCDHGA1Q9Y5H4 TMEM86B-201ENST00000327042 1637 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
PCDHGA1Q9Y5H4 ZNF296-202ENST00000622376 1631 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
PCDHGA1Q9Y5H4 OCIAD1-204ENST00000425583 1915 ntTSL 3 BASIC16.62■□□□□ 0.25
PCDHGA1Q9Y5H4 FAM198A-202ENST00000430121 3121 ntAPPRIS P2 TSL 5 BASIC16.62■□□□□ 0.25
PCDHGA1Q9Y5H4 FAM53C-202ENST00000434981 1686 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
PCDHGA1Q9Y5H4 ADAP1-205ENST00000449296 2093 ntTSL 2 BASIC16.61■□□□□ 0.25
PCDHGA1Q9Y5H4 SNAI3-AS1-202ENST00000563475 2081 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
PCDHGA1Q9Y5H4 C14orf93-204ENST00000397377 1776 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
PCDHGA1Q9Y5H4 RAB4A-205ENST00000618010 2799 ntTSL 3 BASIC16.61■□□□□ 0.25
PCDHGA1Q9Y5H4 ZNF211-204ENST00000347302 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
PCDHGA1Q9Y5H4 AC009949.1-201ENST00000623048 1830 ntBASIC16.61■□□□□ 0.25
PCDHGA1Q9Y5H4 MID1IP1-201ENST00000336949 2536 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
PCDHGA1Q9Y5H4 CNIH3-201ENST00000272133 2558 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
PCDHGA1Q9Y5H4 NPFFR2-201ENST00000308744 1922 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
PCDHGA1Q9Y5H4 NDUFV1-201ENST00000322776 1596 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 31.8 ms