Protein–RNA interactions for Protein: Q9Y2D8

SSX2IP, Afadin- and alpha-actinin-binding protein, humanhuman

Predictions only

Length 614 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSX2IPQ9Y2D8 SULT1A1-204ENST00000395609 1871 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
SSX2IPQ9Y2D8 DNM1-211ENST00000627061 2724 ntTSL 5 BASIC18.69■□□□□ 0.58
SSX2IPQ9Y2D8 MAPKAPK3-208ENST00000621469 2563 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
SSX2IPQ9Y2D8 SP100-208ENST00000427101 1922 ntTSL 2 BASIC18.69■□□□□ 0.58
SSX2IPQ9Y2D8 KANK3-201ENST00000330915 2787 ntAPPRIS P2 TSL 1 (best) BASIC18.69■□□□□ 0.58
SSX2IPQ9Y2D8 CALM3-201ENST00000291295 2289 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
SSX2IPQ9Y2D8 SMN1-201ENST00000351205 900 ntAPPRIS P3 TSL 1 (best) BASIC18.69■□□□□ 0.58
SSX2IPQ9Y2D8 DNAJC4-203ENST00000355040 759 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
SSX2IPQ9Y2D8 SMN2-201ENST00000380741 900 ntAPPRIS P4 TSL 1 (best) BASIC18.69■□□□□ 0.58
SSX2IPQ9Y2D8 TSTD1-204ENST00000423014 593 ntAPPRIS ALT2 TSL 2 BASIC18.69■□□□□ 0.58
SSX2IPQ9Y2D8 AC004967.1-201ENST00000453589 447 ntBASIC18.69■□□□□ 0.58
SSX2IPQ9Y2D8 IGHV3-52-201ENST00000519770 353 ntBASIC18.69■□□□□ 0.58
SSX2IPQ9Y2D8 AC034243.1-201ENST00000520838 587 ntTSL 2 BASIC18.69■□□□□ 0.58
SSX2IPQ9Y2D8 ZFPM1-203ENST00000562437 502 ntTSL 2 BASIC18.69■□□□□ 0.58
SSX2IPQ9Y2D8 AC092718.3-202ENST00000564536 1032 ntAPPRIS P5 TSL 5 BASIC18.69■□□□□ 0.58
SSX2IPQ9Y2D8 AP001160.2-201ENST00000596071 487 ntBASIC18.69■□□□□ 0.58
SSX2IPQ9Y2D8 SMN2-216ENST00000638794 846 ntAPPRIS ALT2 TSL 5 BASIC18.69■□□□□ 0.58
SSX2IPQ9Y2D8 HNRNPM-201ENST00000325495 2494 ntAPPRIS P4 TSL 1 (best) BASIC18.69■□□□□ 0.58
SSX2IPQ9Y2D8 AC132938.5-201ENST00000624980 1813 ntBASIC18.69■□□□□ 0.58
SSX2IPQ9Y2D8 RSPO4-201ENST00000217260 2707 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
SSX2IPQ9Y2D8 FAM219B-204ENST00000563119 2721 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
SSX2IPQ9Y2D8 PPP2R2C-206ENST00000507294 1667 ntTSL 2 BASIC18.69■□□□□ 0.58
SSX2IPQ9Y2D8 PTPRU-202ENST00000373779 5579 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
SSX2IPQ9Y2D8 SPSB4-201ENST00000310546 2908 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
SSX2IPQ9Y2D8 TEF-201ENST00000266304 4394 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
SSX2IPQ9Y2D8 FAM110A-202ENST00000304189 1856 ntAPPRIS P1 TSL 2 BASIC18.69■□□□□ 0.58
SSX2IPQ9Y2D8 RNH1-201ENST00000354420 1894 ntAPPRIS P1 TSL 5 BASIC18.69■□□□□ 0.58
SSX2IPQ9Y2D8 ROBO3-221ENST00000543966 1520 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
SSX2IPQ9Y2D8 AZU1-202ENST00000592205 1713 ntTSL 2 BASIC18.69■□□□□ 0.58
SSX2IPQ9Y2D8 ATG3-201ENST00000283290 1570 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
SSX2IPQ9Y2D8 INPP5J-204ENST00000402238 1564 ntTSL 2 BASIC18.68■□□□□ 0.58
SSX2IPQ9Y2D8 LEMD2-214ENST00000614475 2883 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
SSX2IPQ9Y2D8 NR4A1-203ENST00000394824 2639 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
SSX2IPQ9Y2D8 FCN2-201ENST00000291744 1057 ntAPPRIS P2 TSL 1 (best) BASIC18.68■□□□□ 0.58
SSX2IPQ9Y2D8 C19orf70-201ENST00000309324 896 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
SSX2IPQ9Y2D8 MRPL55-208ENST00000366734 990 ntAPPRIS P1 TSL 2 BASIC18.68■□□□□ 0.58
SSX2IPQ9Y2D8 MRPL55-217ENST00000366746 565 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
SSX2IPQ9Y2D8 DDX43P3-201ENST00000441064 443 ntBASIC18.68■□□□□ 0.58
SSX2IPQ9Y2D8 DDIT4-AS1-201ENST00000491934 847 ntTSL 5 BASIC18.68■□□□□ 0.58
SSX2IPQ9Y2D8 L2HGDH-206ENST00000555610 804 ntTSL 5 BASIC18.68■□□□□ 0.58
SSX2IPQ9Y2D8 NUTF2-206ENST00000569436 1119 ntAPPRIS P1 TSL 2 BASIC18.68■□□□□ 0.58
SSX2IPQ9Y2D8 CDC42EP4-206ENST00000581014 737 ntTSL 5 BASIC18.68■□□□□ 0.58
SSX2IPQ9Y2D8 CYB561-217ENST00000582997 877 ntTSL 5 BASIC18.68■□□□□ 0.58
SSX2IPQ9Y2D8 LINC01842-201ENST00000588275 768 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
SSX2IPQ9Y2D8 AC005256.1-202ENST00000592934 415 ntTSL 2 BASIC18.68■□□□□ 0.58
SSX2IPQ9Y2D8 ZNF419-207ENST00000442920 1857 ntAPPRIS ALT2 TSL 2 BASIC18.68■□□□□ 0.58
SSX2IPQ9Y2D8 PLXNB3-201ENST00000361971 6146 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
SSX2IPQ9Y2D8 CAPN15-201ENST00000219611 4744 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
SSX2IPQ9Y2D8 CRMP1-202ENST00000397890 2911 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
SSX2IPQ9Y2D8 CORO6-210ENST00000580212 2345 ntTSL 5 BASIC18.68■□□□□ 0.58
SSX2IPQ9Y2D8 SIL1-202ENST00000394817 1923 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
SSX2IPQ9Y2D8 MAEA-219ENST00000514708 1945 ntTSL 2 BASIC18.68■□□□□ 0.58
SSX2IPQ9Y2D8 TBC1D3I-202ENST00000618620 1900 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
SSX2IPQ9Y2D8 PDE9A-203ENST00000335440 1728 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
SSX2IPQ9Y2D8 GMPPA-204ENST00000373908 1501 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
SSX2IPQ9Y2D8 SERPINE2-201ENST00000258405 2195 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
SSX2IPQ9Y2D8 SHISA6-204ENST00000441885 7575 ntAPPRIS P3 TSL 5 BASIC18.68■□□□□ 0.58
SSX2IPQ9Y2D8 RNF121-201ENST00000361756 2625 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
SSX2IPQ9Y2D8 EGR3-204ENST00000522910 1553 ntAPPRIS ALT1 TSL 2 BASIC18.68■□□□□ 0.58
SSX2IPQ9Y2D8 NOX4-207ENST00000525196 1555 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
SSX2IPQ9Y2D8 GID4-202ENST00000376345 1391 ntTSL 3 BASIC18.68■□□□□ 0.58
SSX2IPQ9Y2D8 GRIA4-203ENST00000393127 5621 ntTSL 5 BASIC18.68■□□□□ 0.58
SSX2IPQ9Y2D8 NDRG2-208ENST00000397851 2022 ntAPPRIS P4 TSL 2 BASIC18.67■□□□□ 0.58
SSX2IPQ9Y2D8 PIF1-205ENST00000559239 2677 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
SSX2IPQ9Y2D8 DACT2-201ENST00000366795 2942 ntAPPRIS P3 TSL 2 BASIC18.67■□□□□ 0.58
SSX2IPQ9Y2D8 AL354751.1-201ENST00000412768 1863 ntBASIC18.67■□□□□ 0.58
SSX2IPQ9Y2D8 AP003774.1-201ENST00000316124 2340 ntTSL 2 BASIC18.67■□□□□ 0.58
SSX2IPQ9Y2D8 MAPKAP1-205ENST00000373503 3045 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
SSX2IPQ9Y2D8 GABRB3-202ENST00000311550 5781 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
SSX2IPQ9Y2D8 HOXC6-201ENST00000243108 1733 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
SSX2IPQ9Y2D8 LPAR3-201ENST00000370611 1720 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
SSX2IPQ9Y2D8 ALKBH6-201ENST00000252984 955 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
SSX2IPQ9Y2D8 CGREF1-201ENST00000260595 1177 ntAPPRIS ALT2 TSL 5 BASIC18.67■□□□□ 0.58
SSX2IPQ9Y2D8 AC023274.1-201ENST00000418278 595 ntBASIC18.67■□□□□ 0.58
SSX2IPQ9Y2D8 PRSS29P-201ENST00000440800 595 ntBASIC18.67■□□□□ 0.58
SSX2IPQ9Y2D8 URGCP-206ENST00000446958 365 ntTSL 2 BASIC18.67■□□□□ 0.58
SSX2IPQ9Y2D8 AC099669.1-201ENST00000457331 456 ntTSL 3 BASIC18.67■□□□□ 0.58
SSX2IPQ9Y2D8 AC002116.1-201ENST00000473572 1130 ntTSL 2 BASIC18.67■□□□□ 0.58
SSX2IPQ9Y2D8 MVB12A-211ENST00000529939 1091 ntTSL 3 BASIC18.67■□□□□ 0.58
SSX2IPQ9Y2D8 TMEM106C-214ENST00000550161 976 ntTSL 3 BASIC18.67■□□□□ 0.58
SSX2IPQ9Y2D8 PAX9-204ENST00000554201 1289 ntTSL 2 BASIC18.67■□□□□ 0.58
SSX2IPQ9Y2D8 BRICD5-202ENST00000562360 783 ntTSL 2 BASIC18.67■□□□□ 0.58
SSX2IPQ9Y2D8 LYRM1-209ENST00000568663 857 ntAPPRIS P1 TSL 4 BASIC18.67■□□□□ 0.58
SSX2IPQ9Y2D8 OR5AH1P-202ENST00000597822 431 ntTSL 3 BASIC18.67■□□□□ 0.58
SSX2IPQ9Y2D8 CRB3-204ENST00000600229 1078 ntAPPRIS ALT2 TSL 2 BASIC18.67■□□□□ 0.58
SSX2IPQ9Y2D8 AL662799.1-201ENST00000630418 496 ntTSL 5 BASIC18.67■□□□□ 0.58
SSX2IPQ9Y2D8 ACSM2A-201ENST00000219054 1988 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
SSX2IPQ9Y2D8 TRIM63-201ENST00000374272 1770 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
SSX2IPQ9Y2D8 NOV-201ENST00000259526 2522 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
SSX2IPQ9Y2D8 BRPF1-201ENST00000383829 4736 ntAPPRIS ALT1 TSL 1 (best) BASIC18.67■□□□□ 0.58
SSX2IPQ9Y2D8 BMP3-201ENST00000282701 5734 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
SSX2IPQ9Y2D8 CDC42BPG-201ENST00000342711 5742 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
SSX2IPQ9Y2D8 OTOP2-202ENST00000580223 2086 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
SSX2IPQ9Y2D8 KRBOX1-AS1-201ENST00000447834 2134 ntTSL 2 BASIC18.67■□□□□ 0.58
SSX2IPQ9Y2D8 AC002310.6-201ENST00000624451 1377 ntBASIC18.67■□□□□ 0.58
SSX2IPQ9Y2D8 SGCB-201ENST00000381431 4431 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
SSX2IPQ9Y2D8 AL139099.2-201ENST00000555043 2469 ntTSL 2 BASIC18.66■□□□□ 0.58
SSX2IPQ9Y2D8 ZC3H7B-201ENST00000352645 5909 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
SSX2IPQ9Y2D8 AL096828.2-201ENST00000567259 1965 ntBASIC18.66■□□□□ 0.58
SSX2IPQ9Y2D8 BMP2K-208ENST00000628286 3848 ntAPPRIS ALT2 TSL 5 BASIC18.66■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 39.4 ms