Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 EFCAB2-203ENST00000366523 1233 ntAPPRIS P1 TSL 3 BASIC14.07□□□□□ -0.16
FOXA2Q9Y261 INPP5F-203ENST00000369081 874 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
FOXA2Q9Y261 TFPT-203ENST00000391759 1205 ntAPPRIS P3 TSL 1 (best) BASIC14.07□□□□□ -0.16
FOXA2Q9Y261 ZNF337-AS1-204ENST00000428254 817 ntTSL 5 BASIC14.07□□□□□ -0.16
FOXA2Q9Y261 AP000347.1-209ENST00000437294 557 ntTSL 4 BASIC14.07□□□□□ -0.16
FOXA2Q9Y261 ZNF655-218ENST00000454654 571 ntTSL 4 BASIC14.07□□□□□ -0.16
FOXA2Q9Y261 NT5C2-211ENST00000470299 249 ntTSL 5 BASIC14.07□□□□□ -0.16
FOXA2Q9Y261 RN7SL606P-201ENST00000472779 293 ntBASIC14.07□□□□□ -0.16
FOXA2Q9Y261 FAM53C-211ENST00000513056 923 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
FOXA2Q9Y261 ADA-207ENST00000537820 1128 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
FOXA2Q9Y261 ABCD4-228ENST00000557588 763 ntTSL 3 BASIC14.07□□□□□ -0.16
FOXA2Q9Y261 LAT-211ENST00000566177 786 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
FOXA2Q9Y261 NUTF2-205ENST00000568396 1179 ntAPPRIS P1 TSL 3 BASIC14.07□□□□□ -0.16
FOXA2Q9Y261 HOXB8-203ENST00000576562 743 ntAPPRIS ALT1 TSL 2 BASIC14.07□□□□□ -0.16
FOXA2Q9Y261 TK1-204ENST00000590430 683 ntTSL 3 BASIC14.07□□□□□ -0.16
FOXA2Q9Y261 CDC25A-202ENST00000351231 3663 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
FOXA2Q9Y261 AC097374.2-201ENST00000618617 1306 ntBASIC14.07□□□□□ -0.16
FOXA2Q9Y261 HMCN2-204ENST00000611173 1920 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
FOXA2Q9Y261 ELN-207ENST00000380562 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
FOXA2Q9Y261 VASN-201ENST00000304735 2806 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
FOXA2Q9Y261 ZBTB5-201ENST00000307750 4627 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
FOXA2Q9Y261 FAM135A-205ENST00000418814 6415 ntTSL 5 BASIC14.07□□□□□ -0.16
FOXA2Q9Y261 IQCE-217ENST00000623361 6775 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
FOXA2Q9Y261 SEPHS2-201ENST00000478753 2551 ntAPPRIS P1 BASIC14.07□□□□□ -0.16
FOXA2Q9Y261 TAPBP-238ENST00000475304 1686 ntAPPRIS ALT2 TSL 5 BASIC14.07□□□□□ -0.16
FOXA2Q9Y261 SYT6-205ENST00000609117 4424 ntTSL 5 BASIC14.07□□□□□ -0.16
FOXA2Q9Y261 GLYCTK-201ENST00000305690 1371 ntTSL 5 BASIC14.07□□□□□ -0.16
FOXA2Q9Y261 RBFADN-201ENST00000562391 1350 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
FOXA2Q9Y261 WLS-205ENST00000370976 2332 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
FOXA2Q9Y261 NSMF-204ENST00000371473 3556 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
FOXA2Q9Y261 AC060834.1-201ENST00000443027 2032 ntBASIC14.07□□□□□ -0.16
FOXA2Q9Y261 NEO1-202ENST00000339362 7342 ntAPPRIS P3 TSL 5 BASIC14.07□□□□□ -0.16
FOXA2Q9Y261 MAPKAP1-208ENST00000394063 2977 ntTSL 5 BASIC14.07□□□□□ -0.16
FOXA2Q9Y261 ECSIT-202ENST00000270517 1700 ntAPPRIS P3 TSL 1 (best) BASIC14.07□□□□□ -0.16
FOXA2Q9Y261 ASB10-202ENST00000377867 1738 ntTSL 2 BASIC14.07□□□□□ -0.16
FOXA2Q9Y261 EWSAT1-206ENST00000558922 1725 ntTSL 5 BASIC14.07□□□□□ -0.16
FOXA2Q9Y261 C5orf30-201ENST00000319933 3049 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
FOXA2Q9Y261 GALNT11-205ENST00000430044 2727 ntAPPRIS P1 TSL 5 BASIC14.06□□□□□ -0.16
FOXA2Q9Y261 ARID5A-203ENST00000454558 3079 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
FOXA2Q9Y261 AMT-250ENST00000637682 1823 ntTSL 5 BASIC14.06□□□□□ -0.16
FOXA2Q9Y261 LYRM9-203ENST00000460380 2196 ntTSL 2 BASIC14.06□□□□□ -0.16
FOXA2Q9Y261 PPP3CA-201ENST00000323055 4519 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
FOXA2Q9Y261 CDK19-202ENST00000368911 6246 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
FOXA2Q9Y261 CLCN2-204ENST00000434054 2897 ntAPPRIS ALT2 TSL 2 BASIC14.06□□□□□ -0.16
FOXA2Q9Y261 PLTP-202ENST00000372420 1530 ntTSL 2 BASIC14.06□□□□□ -0.16
FOXA2Q9Y261 GGT7-201ENST00000336431 2642 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
FOXA2Q9Y261 LINC00595-204ENST00000434974 2692 ntTSL 2 BASIC14.06□□□□□ -0.16
FOXA2Q9Y261 SBNO2-202ENST00000438103 4537 ntAPPRIS ALT2 TSL 2 BASIC14.06□□□□□ -0.16
FOXA2Q9Y261 STRA8-201ENST00000275764 993 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
FOXA2Q9Y261 MRPL20-201ENST00000344843 721 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
FOXA2Q9Y261 MYCLP1-201ENST00000372451 1075 ntBASIC14.06□□□□□ -0.16
FOXA2Q9Y261 C1QC-203ENST00000374640 1163 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
FOXA2Q9Y261 GOSR2-202ENST00000393456 788 ntTSL 3 BASIC14.06□□□□□ -0.16
FOXA2Q9Y261 AC010655.4-201ENST00000462662 707 ntTSL 4 BASIC14.06□□□□□ -0.16
FOXA2Q9Y261 KLHL21-204ENST00000467612 1056 ntTSL 3 BASIC14.06□□□□□ -0.16
FOXA2Q9Y261 AC113382.1-201ENST00000500267 1253 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
FOXA2Q9Y261 RAB6A-207ENST00000541588 758 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
FOXA2Q9Y261 AP002414.4-201ENST00000589764 1148 ntBASIC14.06□□□□□ -0.16
FOXA2Q9Y261 FCGRT-210ENST00000596975 1054 ntTSL 5 BASIC14.06□□□□□ -0.16
FOXA2Q9Y261 TMEM114-203ENST00000620492 945 ntAPPRIS P1 TSL 2 BASIC14.06□□□□□ -0.16
FOXA2Q9Y261 EML2-AS1-203ENST00000623430 886 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
FOXA2Q9Y261 DYDC2-202ENST00000372197 2022 ntAPPRIS P3 TSL 1 (best) BASIC14.06□□□□□ -0.16
FOXA2Q9Y261 DOK4-201ENST00000340099 2772 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
FOXA2Q9Y261 EWSR1-222ENST00000629659 2446 ntTSL 5 BASIC14.06□□□□□ -0.16
FOXA2Q9Y261 ARL6IP6-201ENST00000326446 2805 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
FOXA2Q9Y261 KCNQ1-201ENST00000155840 3245 ntAPPRIS P2 TSL 1 (best) BASIC14.06□□□□□ -0.16
FOXA2Q9Y261 MAGI1-213ENST00000483466 4791 ntAPPRIS P3 TSL 1 (best) BASIC14.06□□□□□ -0.16
FOXA2Q9Y261 L2HGDH-202ENST00000267436 6414 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
FOXA2Q9Y261 BICD2-201ENST00000356884 6427 ntAPPRIS ALT2 TSL 1 (best) BASIC14.06□□□□□ -0.16
FOXA2Q9Y261 TBC1D2B-201ENST00000300584 6067 ntAPPRIS ALT2 TSL 5 BASIC14.06□□□□□ -0.16
FOXA2Q9Y261 CSF3-206ENST00000577675 1360 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
FOXA2Q9Y261 SQOR-208ENST00000568606 1792 ntAPPRIS P1 TSL 5 BASIC14.06□□□□□ -0.16
FOXA2Q9Y261 AC006064.2-201ENST00000501075 2196 ntTSL 2 BASIC14.06□□□□□ -0.16
FOXA2Q9Y261 BBS7-204ENST00000506636 2570 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
FOXA2Q9Y261 PARP12-201ENST00000263549 3796 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
FOXA2Q9Y261 MTDH-201ENST00000336273 6177 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
FOXA2Q9Y261 KIF16B-203ENST00000408042 4640 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
FOXA2Q9Y261 PIEZO1-201ENST00000301015 8072 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
FOXA2Q9Y261 ANKFY1-202ENST00000570535 6458 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
FOXA2Q9Y261 CPT2-210ENST00000637252 2739 ntTSL 5 BASIC14.06□□□□□ -0.16
FOXA2Q9Y261 PEX16-201ENST00000241041 1479 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
FOXA2Q9Y261 CHID1-203ENST00000436108 1477 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
FOXA2Q9Y261 MRTO4-201ENST00000330263 2315 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
FOXA2Q9Y261 THEM4-201ENST00000368814 2377 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
FOXA2Q9Y261 VPS13B-201ENST00000355155 2822 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
FOXA2Q9Y261 AL445238.1-203ENST00000606050 1525 ntTSL 2 BASIC14.05□□□□□ -0.16
FOXA2Q9Y261 NLGN2-201ENST00000302926 4642 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
FOXA2Q9Y261 ETNK2-202ENST00000367201 2431 ntAPPRIS ALT2 TSL 2 BASIC14.05□□□□□ -0.16
FOXA2Q9Y261 RHNO1-209ENST00000618250 2070 ntAPPRIS P3 TSL 4 BASIC14.05□□□□□ -0.16
FOXA2Q9Y261 NFATC4-208ENST00000553708 5367 ntAPPRIS ALT2 TSL 1 (best) BASIC14.05□□□□□ -0.16
FOXA2Q9Y261 LINC00336-201ENST00000477984 2107 ntTSL 2 BASIC14.05□□□□□ -0.16
FOXA2Q9Y261 PRELID3A-203ENST00000587735 1694 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
FOXA2Q9Y261 RUSC1-214ENST00000490373 1700 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
FOXA2Q9Y261 LINC02012-201ENST00000608206 1725 ntBASIC14.05□□□□□ -0.16
FOXA2Q9Y261 ZNF623-201ENST00000458270 2733 ntAPPRIS ALT2 TSL 1 (best) BASIC14.05□□□□□ -0.16
FOXA2Q9Y261 NCOA5-201ENST00000290231 3220 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
FOXA2Q9Y261 MED30-201ENST00000297347 985 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
FOXA2Q9Y261 SPIN2B-202ENST00000333933 1258 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
FOXA2Q9Y261 S100A3-201ENST00000368712 579 ntAPPRIS P1 TSL 3 BASIC14.05□□□□□ -0.16
FOXA2Q9Y261 MPIG6B-205ENST00000375810 910 ntAPPRIS ALT2 TSL 1 (best) BASIC14.05□□□□□ -0.16
Retrieved 100 of 98,524 protein–RNA pairs in 29.7 ms