Protein–RNA interactions for Protein: Q9NPC8

SIX2, Homeobox protein SIX2, humanhuman

Predictions only

Length 291 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX2Q9NPC8 SGPP2-201ENST00000321276 3336 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
SIX2Q9NPC8 AL109955.1-201ENST00000417346 1540 ntTSL 2 BASIC18.63■□□□□ 0.57
SIX2Q9NPC8 PEX13-204ENST00000444100 1533 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
SIX2Q9NPC8 NRXN1-208ENST00000405472 5724 ntAPPRIS ALT2 TSL 5 BASIC18.63■□□□□ 0.57
SIX2Q9NPC8 TRIM27-201ENST00000377194 2686 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
SIX2Q9NPC8 MED25-202ENST00000538643 1623 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
SIX2Q9NPC8 DOK4-201ENST00000340099 2772 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
SIX2Q9NPC8 EXT2-202ENST00000358681 2997 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
SIX2Q9NPC8 FAM83H-201ENST00000388913 5654 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
SIX2Q9NPC8 MOCS1-206ENST00000425303 1920 ntTSL 2 BASIC18.62■□□□□ 0.57
SIX2Q9NPC8 AL590627.1-201ENST00000626603 1910 ntTSL 2 BASIC18.62■□□□□ 0.57
SIX2Q9NPC8 RILPL2-201ENST00000280571 6141 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
SIX2Q9NPC8 TBXAS1-206ENST00000425687 2080 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
SIX2Q9NPC8 SLC12A2-208ENST00000628403 3617 ntAPPRIS ALT2 TSL 5 BASIC18.62■□□□□ 0.57
SIX2Q9NPC8 PRPF31-203ENST00000419967 2269 ntTSL 5 BASIC18.62■□□□□ 0.57
SIX2Q9NPC8 JHDM1D-AS1-201ENST00000566699 2380 ntBASIC18.62■□□□□ 0.57
SIX2Q9NPC8 RNF216P1-203ENST00000404404 2427 ntBASIC18.62■□□□□ 0.57
SIX2Q9NPC8 LSM12-204ENST00000591247 2484 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
SIX2Q9NPC8 PCDHA2-201ENST00000378132 2626 ntAPPRIS ALT2 BASIC18.62■□□□□ 0.57
SIX2Q9NPC8 PLEKHG5-212ENST00000537245 4794 ntAPPRIS ALT2 TSL 2 BASIC18.62■□□□□ 0.57
SIX2Q9NPC8 C12orf56-207ENST00000543942 3242 ntAPPRIS P1 TSL 5 BASIC18.62■□□□□ 0.57
SIX2Q9NPC8 FAM46A-203ENST00000369756 5537 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
SIX2Q9NPC8 H2AFV-201ENST00000222690 3804 ntAPPRIS ALT1 TSL 2 BASIC18.62■□□□□ 0.57
SIX2Q9NPC8 PAFAH1B3-201ENST00000262890 1003 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
SIX2Q9NPC8 MED16-201ENST00000269814 1199 ntTSL 5 BASIC18.62■□□□□ 0.57
SIX2Q9NPC8 MED30-201ENST00000297347 985 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
SIX2Q9NPC8 BOLA2B-201ENST00000305321 1012 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
SIX2Q9NPC8 BOLA2-201ENST00000330978 1012 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
SIX2Q9NPC8 SMARCC2-202ENST00000347471 3839 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
SIX2Q9NPC8 SLC2A1-204ENST00000460369 541 ntTSL 2 BASIC18.62■□□□□ 0.57
SIX2Q9NPC8 ZNF346-205ENST00000506693 1276 ntTSL 2 BASIC18.62■□□□□ 0.57
SIX2Q9NPC8 ANKRD13D-218ENST00000515828 1111 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
SIX2Q9NPC8 ZBED5-AS1-202ENST00000529014 771 ntTSL 5 BASIC18.62■□□□□ 0.57
SIX2Q9NPC8 FLT3LG-206ENST00000597551 951 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
SIX2Q9NPC8 IGHV3OR16-7-201ENST00000604106 360 ntBASIC18.62■□□□□ 0.57
SIX2Q9NPC8 C16orf70-208ENST00000569600 1353 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
SIX2Q9NPC8 CABP4-202ENST00000438189 1426 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
SIX2Q9NPC8 SIGLEC16-201ENST00000599858 1437 ntBASIC18.62■□□□□ 0.57
SIX2Q9NPC8 CELF6-204ENST00000543764 1676 ntTSL 2 BASIC18.62■□□□□ 0.57
SIX2Q9NPC8 RHBG-204ENST00000537040 1789 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
SIX2Q9NPC8 GRB7-201ENST00000309156 2243 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
SIX2Q9NPC8 NSFL1C-202ENST00000353088 2611 ntTSL 2 BASIC18.62■□□□□ 0.57
SIX2Q9NPC8 LRP8-207ENST00000465675 2670 ntTSL 2 BASIC18.62■□□□□ 0.57
SIX2Q9NPC8 RXRB-201ENST00000374680 2908 ntAPPRIS P3 TSL 1 (best) BASIC18.62■□□□□ 0.57
SIX2Q9NPC8 AL731569.1-201ENST00000428940 3058 ntTSL 2 BASIC18.62■□□□□ 0.57
SIX2Q9NPC8 KANSL1-202ENST00000432791 5343 ntAPPRIS P3 TSL 1 (best) BASIC18.62■□□□□ 0.57
SIX2Q9NPC8 ARNT-202ENST00000358595 4887 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
SIX2Q9NPC8 CYP2U1-202ENST00000508453 3125 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
SIX2Q9NPC8 ABCG5-201ENST00000260645 2740 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
SIX2Q9NPC8 BAIAP2-205ENST00000435091 2129 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
SIX2Q9NPC8 POC1A-201ENST00000296484 1898 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
SIX2Q9NPC8 GPER1-204ENST00000401670 1542 ntAPPRIS P1 TSL 2 BASIC18.61■□□□□ 0.57
SIX2Q9NPC8 TRIB3-202ENST00000422053 1533 ntAPPRIS ALT2 TSL 2 BASIC18.61■□□□□ 0.57
SIX2Q9NPC8 HTD2-206ENST00000481972 1378 ntAPPRIS P1 TSL 2 BASIC18.61■□□□□ 0.57
SIX2Q9NPC8 CACNG7-201ENST00000222212 1016 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
SIX2Q9NPC8 PSMA7-201ENST00000370858 925 ntTSL 2 BASIC18.61■□□□□ 0.57
SIX2Q9NPC8 PSMA7-203ENST00000370873 996 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
SIX2Q9NPC8 CDKN1C-201ENST00000380725 1220 ntAPPRIS ALT2 TSL 2 BASIC18.61■□□□□ 0.57
SIX2Q9NPC8 GNB1L-203ENST00000405009 1076 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
SIX2Q9NPC8 NCBP2-AS1-201ENST00000447775 562 ntTSL 5 BASIC18.61■□□□□ 0.57
SIX2Q9NPC8 CHRNB1-207ENST00000575379 1095 ntTSL 2 BASIC18.61■□□□□ 0.57
SIX2Q9NPC8 AC138894.3-201ENST00000603787 634 ntBASIC18.61■□□□□ 0.57
SIX2Q9NPC8 SMIM8-209ENST00000608868 815 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
SIX2Q9NPC8 AP001269.4-201ENST00000609611 512 ntBASIC18.61■□□□□ 0.57
SIX2Q9NPC8 Metazoa_SRP.33-201ENST00000613468 285 ntBASIC18.61■□□□□ 0.57
SIX2Q9NPC8 CD244-203ENST00000368034 2463 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
SIX2Q9NPC8 NSMF-204ENST00000371473 3556 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
SIX2Q9NPC8 SLC25A45-208ENST00000527174 2138 ntAPPRIS P1 TSL 3 BASIC18.61■□□□□ 0.57
SIX2Q9NPC8 KRT84-201ENST00000257951 2092 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
SIX2Q9NPC8 AZIN1-201ENST00000337198 4721 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
SIX2Q9NPC8 MIB2-232ENST00000520777 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
SIX2Q9NPC8 LETM2-202ENST00000379957 1873 ntAPPRIS ALT2 TSL 5 BASIC18.6■□□□□ 0.57
SIX2Q9NPC8 RIOX2-201ENST00000333396 5347 ntAPPRIS ALT1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SIX2Q9NPC8 EHD2-202ENST00000538399 1766 ntTSL 2 BASIC18.6■□□□□ 0.57
SIX2Q9NPC8 CBWD1-202ENST00000356521 1706 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SIX2Q9NPC8 EWSAT1-206ENST00000558922 1725 ntTSL 5 BASIC18.6■□□□□ 0.57
SIX2Q9NPC8 BET1L-203ENST00000382762 2819 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SIX2Q9NPC8 CHEK1-202ENST00000427383 1670 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
SIX2Q9NPC8 SPAG6-202ENST00000376603 2770 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
SIX2Q9NPC8 ARHGAP33-201ENST00000007510 2545 ntAPPRIS ALT2 TSL 5 BASIC18.6■□□□□ 0.57
SIX2Q9NPC8 REL-202ENST00000394479 2398 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
SIX2Q9NPC8 TRIM7-204ENST00000393319 2320 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
SIX2Q9NPC8 SLC29A1-208ENST00000393844 2326 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SIX2Q9NPC8 SPG7-201ENST00000268704 3076 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SIX2Q9NPC8 FTMT-201ENST00000321339 879 ntAPPRIS P1 BASIC18.6■□□□□ 0.57
SIX2Q9NPC8 IGLL1-202ENST00000330377 901 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SIX2Q9NPC8 TLE1-202ENST00000376484 666 ntTSL 3 BASIC18.6■□□□□ 0.57
SIX2Q9NPC8 GGT1-204ENST00000401885 968 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
SIX2Q9NPC8 COLEC11-207ENST00000404205 1062 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
SIX2Q9NPC8 FOXD3-AS1-201ENST00000418244 941 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
SIX2Q9NPC8 AL020989.1-201ENST00000422979 469 ntBASIC18.6■□□□□ 0.57
SIX2Q9NPC8 GNB2-207ENST00000427895 1146 ntTSL 5 BASIC18.6■□□□□ 0.57
SIX2Q9NPC8 SRP19-202ENST00000445150 833 ntTSL 2 BASIC18.6■□□□□ 0.57
SIX2Q9NPC8 AC009061.1-201ENST00000567261 475 ntTSL 3 BASIC18.6■□□□□ 0.57
SIX2Q9NPC8 SRSF1-209ENST00000585096 568 ntTSL 4 BASIC18.6■□□□□ 0.57
SIX2Q9NPC8 REXO2-220ENST00000611665 1158 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SIX2Q9NPC8 MYH14-206ENST00000596571 5988 ntAPPRIS ALT2 TSL 5 BASIC18.6■□□□□ 0.57
SIX2Q9NPC8 AC078925.2-201ENST00000624013 1973 ntBASIC18.6■□□□□ 0.57
SIX2Q9NPC8 B4GALNT2-201ENST00000300404 1906 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
SIX2Q9NPC8 CLEC18C-201ENST00000314151 1934 ntAPPRIS P2 TSL 1 (best) BASIC18.6■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 41.2 ms