Protein–RNA interactions for Protein: Q96RU2

USP28, Ubiquitin carboxyl-terminal hydrolase 28, humanhuman

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP28Q96RU2 HIST1H2AI-201ENST00000358739 503 ntAPPRIS P1 BASIC19.87■□□□□ 0.77
USP28Q96RU2 NAPSB-203ENST00000531692 561 ntTSL 2 BASIC19.87■□□□□ 0.77
USP28Q96RU2 AP000777.3-201ENST00000538705 491 ntTSL 3 BASIC19.87■□□□□ 0.77
USP28Q96RU2 AC009533.2-201ENST00000543664 586 ntBASIC19.87■□□□□ 0.77
USP28Q96RU2 NTF4-201ENST00000593537 932 ntAPPRIS P1 BASIC19.87■□□□□ 0.77
USP28Q96RU2 AC011467.2-201ENST00000598425 242 ntBASIC19.87■□□□□ 0.77
USP28Q96RU2 AC116407.4-201ENST00000623319 1061 ntBASIC19.87■□□□□ 0.77
USP28Q96RU2 LTBP4-203ENST00000308370 4948 ntAPPRIS P4 TSL 1 (best) BASIC19.87■□□□□ 0.77
USP28Q96RU2 EPB41-205ENST00000373797 2402 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
USP28Q96RU2 TOM1-210ENST00000449058 2389 ntAPPRIS P3 TSL 1 (best) BASIC19.87■□□□□ 0.77
USP28Q96RU2 DNMT3A-205ENST00000402667 2300 ntAPPRIS ALT1 TSL 5 BASIC19.87■□□□□ 0.77
USP28Q96RU2 ADM5-201ENST00000420022 1718 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
USP28Q96RU2 SLC5A2-201ENST00000330498 2271 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
USP28Q96RU2 SMPD4-202ENST00000409031 4896 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
USP28Q96RU2 GDA-201ENST00000238018 2074 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
USP28Q96RU2 NFATC4-218ENST00000554966 2506 ntAPPRIS ALT2 TSL 1 (best) BASIC19.86■□□□□ 0.77
USP28Q96RU2 NFATC4-225ENST00000556169 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC19.86■□□□□ 0.77
USP28Q96RU2 AIDA-201ENST00000340020 3008 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
USP28Q96RU2 NRXN2-202ENST00000301894 3535 ntTSL 5 BASIC19.86■□□□□ 0.77
USP28Q96RU2 PDLIM2-206ENST00000409141 1463 ntTSL 2 BASIC19.86■□□□□ 0.77
USP28Q96RU2 SHOX-204ENST00000554971 1902 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
USP28Q96RU2 COL16A1-203ENST00000373672 5736 ntAPPRIS P1 TSL 5 BASIC19.86■□□□□ 0.77
USP28Q96RU2 SGSM2-202ENST00000426855 4734 ntAPPRIS ALT1 TSL 1 (best) BASIC19.86■□□□□ 0.77
USP28Q96RU2 TSC22D1-AS1-201ENST00000616360 2845 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
USP28Q96RU2 CNTNAP3B-201ENST00000276974 3240 ntTSL 5 BASIC19.86■□□□□ 0.77
USP28Q96RU2 AQP8-201ENST00000219660 1359 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
USP28Q96RU2 NDRG4-202ENST00000356752 1375 ntTSL 2 BASIC19.86■□□□□ 0.77
USP28Q96RU2 RANBP3-220ENST00000591092 1783 ntAPPRIS ALT2 TSL 1 (best) BASIC19.86■□□□□ 0.77
USP28Q96RU2 TSPAN32-201ENST00000182290 1318 ntAPPRIS P2 TSL 1 (best) BASIC19.86■□□□□ 0.77
USP28Q96RU2 SHBG-201ENST00000340624 1311 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
USP28Q96RU2 TAX1BP3-202ENST00000611779 1302 ntTSL 2 BASIC19.86■□□□□ 0.77
USP28Q96RU2 TSPAN32-217ENST00000612299 1301 ntTSL 5 BASIC19.86■□□□□ 0.77
USP28Q96RU2 FIGNL2-202ENST00000618634 4812 ntAPPRIS P1 TSL 5 BASIC19.86■□□□□ 0.77
USP28Q96RU2 ZIC1-201ENST00000282928 5241 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
USP28Q96RU2 ADRB3-201ENST00000345060 2950 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
USP28Q96RU2 BOLA1-202ENST00000369152 859 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
USP28Q96RU2 MPIG6B-202ENST00000375805 668 ntAPPRIS ALT2 TSL 1 (best) BASIC19.86■□□□□ 0.77
USP28Q96RU2 TRIM73-203ENST00000437796 1169 ntAPPRIS P2 TSL 1 (best) BASIC19.86■□□□□ 0.77
USP28Q96RU2 AC068134.1-202ENST00000439072 356 ntTSL 5 BASIC19.86■□□□□ 0.77
USP28Q96RU2 AP002383.4-201ENST00000442518 975 ntBASIC19.86■□□□□ 0.77
USP28Q96RU2 EIF2AK4-209ENST00000560648 687 ntTSL 3 BASIC19.86■□□□□ 0.77
USP28Q96RU2 NME3-204ENST00000563498 920 ntTSL 2 BASIC19.86■□□□□ 0.77
USP28Q96RU2 AL807752.6-202ENST00000622933 765 ntAPPRIS P5 TSL 3 BASIC19.86■□□□□ 0.77
USP28Q96RU2 LTBR-207ENST00000539925 1665 ntAPPRIS ALT2 TSL 2 BASIC19.86■□□□□ 0.77
USP28Q96RU2 NSDHL-203ENST00000440023 1630 ntAPPRIS P2 TSL 5 BASIC19.86■□□□□ 0.77
USP28Q96RU2 ITGA6-201ENST00000264107 5618 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
USP28Q96RU2 FBXO18-201ENST00000362091 3560 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
USP28Q96RU2 KCNJ8-201ENST00000240662 2389 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
USP28Q96RU2 SLC27A4-202ENST00000372870 1557 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
USP28Q96RU2 AC009336.1-201ENST00000608941 1553 ntBASIC19.86■□□□□ 0.77
USP28Q96RU2 TLK2-201ENST00000326270 3512 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
USP28Q96RU2 ZNF786-201ENST00000316286 3144 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
USP28Q96RU2 C1QTNF1-202ENST00000339142 3100 ntAPPRIS P1 TSL 5 BASIC19.86■□□□□ 0.77
USP28Q96RU2 SPATS2L-218ENST00000451764 2250 ntAPPRIS P1 TSL 5 BASIC19.86■□□□□ 0.77
USP28Q96RU2 WBP2-219ENST00000626827 1867 ntTSL 5 BASIC19.86■□□□□ 0.77
USP28Q96RU2 PLA2R1-202ENST00000392771 5160 ntAPPRIS ALT2 TSL 1 (best) BASIC19.86■□□□□ 0.77
USP28Q96RU2 ADGRG2-208ENST00000379873 4698 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
USP28Q96RU2 PAK4-203ENST00000360442 2855 ntAPPRIS P1 TSL 5 BASIC19.85■□□□□ 0.77
USP28Q96RU2 SYNM-204ENST00000594047 6407 ntAPPRIS ALT2 TSL 1 (best) BASIC19.85■□□□□ 0.77
USP28Q96RU2 RPL13P5-202ENST00000412023 1438 ntTSL 2 BASIC19.85■□□□□ 0.77
USP28Q96RU2 CTNNAL1-201ENST00000325551 2490 ntAPPRIS P3 TSL 1 (best) BASIC19.85■□□□□ 0.77
USP28Q96RU2 TRPV4-207ENST00000541794 2475 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
USP28Q96RU2 PPOX-202ENST00000367999 1740 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
USP28Q96RU2 ESYT3-201ENST00000289135 1356 ntTSL 5 BASIC19.85■□□□□ 0.77
USP28Q96RU2 MAP3K6-201ENST00000357582 4136 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
USP28Q96RU2 MGAT1-203ENST00000393340 3077 ntAPPRIS P1 TSL 2 BASIC19.85■□□□□ 0.77
USP28Q96RU2 DPEP1-203ENST00000421184 1647 ntAPPRIS P1 TSL 5 BASIC19.85■□□□□ 0.77
USP28Q96RU2 E2F2-201ENST00000361729 5191 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
USP28Q96RU2 VEGFA-205ENST00000372067 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC19.85■□□□□ 0.77
USP28Q96RU2 GPR32-201ENST00000270590 1269 ntAPPRIS P1 BASIC19.85■□□□□ 0.77
USP28Q96RU2 TMEM88-201ENST00000301599 875 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
USP28Q96RU2 MADCAM1-203ENST00000382683 603 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
USP28Q96RU2 GGT1-207ENST00000404532 853 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
USP28Q96RU2 PLAC8-202ENST00000411416 786 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
USP28Q96RU2 EEF1D-243ENST00000532400 419 ntTSL 3 BASIC19.85■□□□□ 0.77
USP28Q96RU2 ABR-204ENST00000543210 1049 ntTSL 2 BASIC19.85■□□□□ 0.77
USP28Q96RU2 AL049597.2-201ENST00000565575 961 ntBASIC19.85■□□□□ 0.77
USP28Q96RU2 ABR-217ENST00000572441 563 ntTSL 4 BASIC19.85■□□□□ 0.77
USP28Q96RU2 AD001527.2-201ENST00000622994 785 ntBASIC19.85■□□□□ 0.77
USP28Q96RU2 ITPK1-210ENST00000556603 3174 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
USP28Q96RU2 EIF4H-202ENST00000353999 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC19.85■□□□□ 0.77
USP28Q96RU2 EGFEM1P-202ENST00000431685 1563 ntBASIC19.85■□□□□ 0.77
USP28Q96RU2 SLC25A23-202ENST00000301454 3425 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
USP28Q96RU2 AL355315.1-201ENST00000370649 1848 ntAPPRIS P1 TSL 2 BASIC19.85■□□□□ 0.77
USP28Q96RU2 N4BP3-201ENST00000274605 6080 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
USP28Q96RU2 MAPK8IP3-201ENST00000250894 5661 ntAPPRIS P3 TSL 1 (best) BASIC19.85■□□□□ 0.77
USP28Q96RU2 IRS2-201ENST00000375856 8138 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
USP28Q96RU2 SMN1-204ENST00000506163 1445 ntAPPRIS ALT2 TSL 1 (best) BASIC19.85■□□□□ 0.77
USP28Q96RU2 MCTP2-205ENST00000543482 1422 ntTSL 2 BASIC19.85■□□□□ 0.77
USP28Q96RU2 PNO1-201ENST00000263657 2286 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
USP28Q96RU2 AC078925.2-201ENST00000624013 1973 ntBASIC19.84■□□□□ 0.77
USP28Q96RU2 NAP1L4-201ENST00000380542 2511 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
USP28Q96RU2 SPRYD7-201ENST00000361840 3053 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
USP28Q96RU2 ADAD1-203ENST00000388725 1918 ntTSL 2 BASIC19.84■□□□□ 0.77
USP28Q96RU2 SLC12A9-202ENST00000415287 1912 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
USP28Q96RU2 AC233702.3-201ENST00000578656 1387 ntBASIC19.84■□□□□ 0.77
USP28Q96RU2 CEP76-202ENST00000423709 2197 ntTSL 2 BASIC19.84■□□□□ 0.77
USP28Q96RU2 CSNK1A1L-201ENST00000379800 2406 ntAPPRIS P1 BASIC19.84■□□□□ 0.77
USP28Q96RU2 CBS-202ENST00000359624 2353 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
USP28Q96RU2 CBSL-203ENST00000618024 2353 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 51.3 ms