Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 C1orf226-202ENST00000426197 1049 ntAPPRIS P3 TSL 2 BASIC16.99■□□□□ 0.31
VPS13AQ96RL7 IFITM2-204ENST00000533141 588 ntAPPRIS ALT2 TSL 4 BASIC16.99■□□□□ 0.31
VPS13AQ96RL7 RARRES2P8-201ENST00000566335 367 ntBASIC16.99■□□□□ 0.31
VPS13AQ96RL7 NAPA-AS1-201ENST00000593284 1753 ntTSL 2 BASIC16.99■□□□□ 0.31
VPS13AQ96RL7 TMEM147-AS1-203ENST00000589137 1627 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
VPS13AQ96RL7 TRIM41-202ENST00000351937 2696 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
VPS13AQ96RL7 ANKRD29-208ENST00000592179 3361 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
VPS13AQ96RL7 RRP7BP-201ENST00000357802 2375 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
VPS13AQ96RL7 RBM14-202ENST00000393979 1426 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
VPS13AQ96RL7 SLC22A7-201ENST00000372574 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
VPS13AQ96RL7 PHF2-202ENST00000375376 3045 ntTSL 5 BASIC16.99■□□□□ 0.31
VPS13AQ96RL7 LINC00116-202ENST00000426713 461 ntAPPRIS ALT2 TSL 3 BASIC16.99■□□□□ 0.31
VPS13AQ96RL7 GGTLC2-202ENST00000448514 678 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
VPS13AQ96RL7 AL513480.1-201ENST00000451731 511 ntBASIC16.99■□□□□ 0.31
VPS13AQ96RL7 RAB7A-204ENST00000483906 533 ntTSL 3 BASIC16.99■□□□□ 0.31
VPS13AQ96RL7 MRPL52-216ENST00000557221 922 ntTSL 2 BASIC16.99■□□□□ 0.31
VPS13AQ96RL7 AC104794.3-201ENST00000566840 1248 ntBASIC16.99■□□□□ 0.31
VPS13AQ96RL7 MYMX-202ENST00000576476 682 ntAPPRIS P1 TSL 3 BASIC16.99■□□□□ 0.31
VPS13AQ96RL7 AURKB-214ENST00000585124 1227 ntAPPRIS P3 TSL 1 (best) BASIC16.99■□□□□ 0.31
VPS13AQ96RL7 GDPD1-201ENST00000284116 1821 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
VPS13AQ96RL7 PARVG-205ENST00000422871 3462 ntAPPRIS P1 TSL 5 BASIC16.98■□□□□ 0.31
VPS13AQ96RL7 KLK15-201ENST00000326856 1389 ntAPPRIS ALT1 TSL 5 BASIC16.98■□□□□ 0.31
VPS13AQ96RL7 PYCR2-201ENST00000343818 1689 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
VPS13AQ96RL7 RASGRP2-211ENST00000394432 2304 ntAPPRIS P2 TSL 1 (best) BASIC16.98■□□□□ 0.31
VPS13AQ96RL7 ZNF138-201ENST00000307355 1141 ntAPPRIS ALT2 TSL 4 BASIC16.98■□□□□ 0.31
VPS13AQ96RL7 FAM86MP-201ENST00000340703 885 ntBASIC16.98■□□□□ 0.31
VPS13AQ96RL7 TCEAL3-203ENST00000372628 1221 ntAPPRIS P1 TSL 5 BASIC16.98■□□□□ 0.31
VPS13AQ96RL7 ACTG1P4-201ENST00000425123 1122 ntBASIC16.98■□□□□ 0.31
VPS13AQ96RL7 AP003068.1-201ENST00000528887 544 ntTSL 4 BASIC16.98■□□□□ 0.31
VPS13AQ96RL7 AP000842.3-202ENST00000569238 1080 ntBASIC16.98■□□□□ 0.31
VPS13AQ96RL7 DUSP13-212ENST00000605915 1015 ntTSL 5 BASIC16.98■□□□□ 0.31
VPS13AQ96RL7 Z84492.1-201ENST00000606589 408 ntAPPRIS P1 TSL 3 BASIC16.98■□□□□ 0.31
VPS13AQ96RL7 LTA-214ENST00000454783 1507 ntAPPRIS P1 TSL 2 BASIC16.98■□□□□ 0.31
VPS13AQ96RL7 ANKMY1-209ENST00000405523 1827 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
VPS13AQ96RL7 ZNF331-214ENST00000511154 2120 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
VPS13AQ96RL7 GGNBP2-210ENST00000611219 2315 ntTSL 2 BASIC16.98■□□□□ 0.31
VPS13AQ96RL7 MCHR2-202ENST00000369212 1311 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
VPS13AQ96RL7 RN7SL752P-201ENST00000463779 287 ntBASIC16.98■□□□□ 0.31
VPS13AQ96RL7 FAM162A-202ENST00000469967 1015 ntTSL 2 BASIC16.98■□□□□ 0.31
VPS13AQ96RL7 FAM8A2P-201ENST00000528813 1142 ntBASIC16.98■□□□□ 0.31
VPS13AQ96RL7 AL442663.3-201ENST00000554737 1000 ntTSL 3 BASIC16.98■□□□□ 0.31
VPS13AQ96RL7 WDR59-202ENST00000536050 1752 ntTSL 2 BASIC16.98■□□□□ 0.31
VPS13AQ96RL7 PFN2-201ENST00000239940 2261 ntAPPRIS P3 TSL 1 (best) BASIC16.98■□□□□ 0.31
VPS13AQ96RL7 GNAI2-204ENST00000440628 1663 ntTSL 5 BASIC16.98■□□□□ 0.31
VPS13AQ96RL7 HFE2-205ENST00000497365 1419 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
VPS13AQ96RL7 TEAD2-203ENST00000539846 1444 ntTSL 2 BASIC16.98■□□□□ 0.31
VPS13AQ96RL7 PANX1-201ENST00000227638 2769 ntAPPRIS P2 TSL 1 (best) BASIC16.98■□□□□ 0.31
VPS13AQ96RL7 AOC3-204ENST00000591562 2522 ntTSL 2 BASIC16.98■□□□□ 0.31
VPS13AQ96RL7 T-201ENST00000296946 2436 ntAPPRIS P1 TSL 5 BASIC16.98■□□□□ 0.31
VPS13AQ96RL7 KLHDC3-201ENST00000244670 1903 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
VPS13AQ96RL7 AC138028.1-201ENST00000333666 2137 ntTSL 2 BASIC16.97■□□□□ 0.31
VPS13AQ96RL7 MPV17-208ENST00000405076 603 ntTSL 5 BASIC16.97■□□□□ 0.31
VPS13AQ96RL7 CC2D2B-203ENST00000423344 1241 ntTSL 2 BASIC16.97■□□□□ 0.31
VPS13AQ96RL7 SLC25A6P2-201ENST00000497974 877 ntBASIC16.97■□□□□ 0.31
VPS13AQ96RL7 DHRS4-205ENST00000558263 1089 ntTSL 5 BASIC16.97■□□□□ 0.31
VPS13AQ96RL7 DHRS4L2-207ENST00000558753 556 ntTSL 2 BASIC16.97■□□□□ 0.31
VPS13AQ96RL7 COQ4-205ENST00000609948 956 ntTSL 2 BASIC16.97■□□□□ 0.31
VPS13AQ96RL7 ZNF445-205ENST00000617032 1291 ntTSL 5 BASIC16.97■□□□□ 0.31
VPS13AQ96RL7 POLR3E-209ENST00000564209 2464 ntTSL 2 BASIC16.97■□□□□ 0.31
VPS13AQ96RL7 CTSB-220ENST00000531089 1436 ntAPPRIS P1 TSL 5 BASIC16.97■□□□□ 0.31
VPS13AQ96RL7 HARS2-206ENST00000508522 1562 ntTSL 2 BASIC16.97■□□□□ 0.31
VPS13AQ96RL7 CISD2-201ENST00000273986 2327 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
VPS13AQ96RL7 EI24-214ENST00000620753 1718 ntAPPRIS P1 TSL 5 BASIC16.97■□□□□ 0.31
VPS13AQ96RL7 MIR346-201ENST00000362234 95 ntBASIC16.97■□□□□ 0.31
VPS13AQ96RL7 AL353779.1-201ENST00000434793 351 ntBASIC16.97■□□□□ 0.31
VPS13AQ96RL7 AC109462.3-201ENST00000573934 613 ntBASIC16.97■□□□□ 0.31
VPS13AQ96RL7 GPR62-201ENST00000322241 2191 ntAPPRIS P1 BASIC16.97■□□□□ 0.31
VPS13AQ96RL7 MTDH-203ENST00000519934 2184 ntTSL 5 BASIC16.97■□□□□ 0.31
VPS13AQ96RL7 KCNQ2-215ENST00000629241 2853 ntTSL 5 BASIC16.97■□□□□ 0.31
VPS13AQ96RL7 ZNF140-210ENST00000544426 2340 ntTSL 2 BASIC16.97■□□□□ 0.31
VPS13AQ96RL7 SPAG16-204ENST00000413312 2258 ntTSL 5 BASIC16.97■□□□□ 0.31
VPS13AQ96RL7 CDKN2C-201ENST00000262662 2904 ntAPPRIS P1 TSL 2 BASIC16.97■□□□□ 0.31
VPS13AQ96RL7 TMEM79-203ENST00000405535 2201 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
VPS13AQ96RL7 ZNF618-203ENST00000374126 3018 ntAPPRIS ALT2 TSL 1 (best) BASIC16.97■□□□□ 0.31
VPS13AQ96RL7 HNRNPRP1-201ENST00000453465 1695 ntBASIC16.97■□□□□ 0.31
VPS13AQ96RL7 AC007541.1-201ENST00000570282 1469 ntBASIC16.97■□□□□ 0.31
VPS13AQ96RL7 CORO1B-202ENST00000393893 1931 ntAPPRIS P1 TSL 5 BASIC16.97■□□□□ 0.31
VPS13AQ96RL7 C1orf68-201ENST00000368775 949 ntAPPRIS P1 BASIC16.97■□□□□ 0.31
VPS13AQ96RL7 NPM2-202ENST00000381530 925 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
VPS13AQ96RL7 ROPN1-207ENST00000484329 566 ntTSL 3 BASIC16.97■□□□□ 0.31
VPS13AQ96RL7 DRAP1-208ENST00000532933 751 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
VPS13AQ96RL7 USB1-203ENST00000539737 1212 ntTSL 2 BASIC16.97■□□□□ 0.31
VPS13AQ96RL7 TBC1D16-205ENST00000572862 1141 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
VPS13AQ96RL7 NDUFS7-210ENST00000539480 1743 ntTSL 2 BASIC16.97■□□□□ 0.31
VPS13AQ96RL7 ATP5G2-208ENST00000552242 1950 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
VPS13AQ96RL7 PARD3-205ENST00000374773 3420 ntTSL 5 BASIC16.96■□□□□ 0.31
VPS13AQ96RL7 TRPV3-209ENST00000576742 2766 ntAPPRIS P3 TSL 1 (best) BASIC16.96■□□□□ 0.31
VPS13AQ96RL7 FZD10-201ENST00000229030 3281 ntAPPRIS P1 BASIC16.96■□□□□ 0.31
VPS13AQ96RL7 FZD10-202ENST00000539839 3282 ntBASIC16.96■□□□□ 0.31
VPS13AQ96RL7 TMEM270-201ENST00000320531 854 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
VPS13AQ96RL7 CCDC107-201ENST00000327351 804 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.31
VPS13AQ96RL7 SLC18B1-202ENST00000367918 472 ntTSL 5 BASIC16.96■□□□□ 0.31
VPS13AQ96RL7 AL354836.1-201ENST00000414042 681 ntTSL 2 BASIC16.96■□□□□ 0.31
VPS13AQ96RL7 HLA-DPB2-205ENST00000435074 1188 ntBASIC16.96■□□□□ 0.31
VPS13AQ96RL7 RCAN1-212ENST00000492600 935 ntTSL 2 BASIC16.96■□□□□ 0.31
VPS13AQ96RL7 FUZ-207ENST00000526575 482 ntTSL 4 BASIC16.96■□□□□ 0.31
VPS13AQ96RL7 FAM181A-205ENST00000557719 1072 ntAPPRIS P1 TSL 2 BASIC16.96■□□□□ 0.31
VPS13AQ96RL7 FOSB-211ENST00000592436 1057 ntTSL 5 BASIC16.96■□□□□ 0.31
VPS13AQ96RL7 KRT5-201ENST00000252242 2531 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
VPS13AQ96RL7 MAFF-202ENST00000407965 2325 ntAPPRIS P1 TSL 2 BASIC16.96■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 40.9 ms