Protein–RNA interactions for Protein: Q96EP1

CHFR, E3 ubiquitin-protein ligase CHFR, humanhuman

Predictions only

Length 664 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHFRQ96EP1 SIT1-204ENST00000618781 1317 ntAPPRIS ALT2 TSL 5 BASIC17.61■□□□□ 0.41
CHFRQ96EP1 NR1H3-202ENST00000405576 1352 ntTSL 5 BASIC17.61■□□□□ 0.41
CHFRQ96EP1 TPSAB1-202ENST00000461509 1357 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
CHFRQ96EP1 IRF9-203ENST00000557894 1391 ntTSL 5 BASIC17.61■□□□□ 0.41
CHFRQ96EP1 SNAP47-201ENST00000315781 2367 ntAPPRIS P3 TSL 1 (best) BASIC17.61■□□□□ 0.41
CHFRQ96EP1 SVOPL-204ENST00000436657 1420 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
CHFRQ96EP1 PIGV-201ENST00000078527 2367 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
CHFRQ96EP1 SLC22A17-204ENST00000397267 2455 ntAPPRIS P4 TSL 5 BASIC17.61■□□□□ 0.41
CHFRQ96EP1 OBSL1-203ENST00000373876 5503 ntTSL 5 BASIC17.61■□□□□ 0.41
CHFRQ96EP1 PLEKHG5-207ENST00000400913 4698 ntAPPRIS P3 TSL 5 BASIC17.61■□□□□ 0.41
CHFRQ96EP1 MYO9A-214ENST00000566885 5111 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
CHFRQ96EP1 SEPT8-208ENST00000378721 1723 ntTSL 5 BASIC17.61■□□□□ 0.41
CHFRQ96EP1 TFAP2D-201ENST00000008391 1711 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
CHFRQ96EP1 GAREM2-201ENST00000401533 4161 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
CHFRQ96EP1 ITPRIPL1-205ENST00000536814 1947 ntAPPRIS P1 TSL 3 BASIC17.6■□□□□ 0.41
CHFRQ96EP1 BIRC8-201ENST00000426466 2026 ntAPPRIS P1 BASIC17.6■□□□□ 0.41
CHFRQ96EP1 ARF1-214ENST00000541182 2006 ntAPPRIS P1 TSL 2 BASIC17.6■□□□□ 0.41
CHFRQ96EP1 CDH23-212ENST00000616684 4814 ntTSL 5 BASIC17.6■□□□□ 0.41
CHFRQ96EP1 RUVBL1-202ENST00000464873 2126 ntTSL 2 BASIC17.6■□□□□ 0.41
CHFRQ96EP1 KRT8-216ENST00000552551 2126 ntAPPRIS P1 TSL 2 BASIC17.6■□□□□ 0.41
CHFRQ96EP1 PLPPR2-208ENST00000591608 2552 ntAPPRIS ALT2 TSL 2 BASIC17.6■□□□□ 0.41
CHFRQ96EP1 TMEM129-202ENST00000382936 2810 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
CHFRQ96EP1 LONP1-215ENST00000593119 2918 ntTSL 2 BASIC17.6■□□□□ 0.41
CHFRQ96EP1 WRNIP1-202ENST00000380769 3239 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
CHFRQ96EP1 MIDN-206ENST00000591446 3243 ntAPPRIS P2 TSL 1 (best) BASIC17.6■□□□□ 0.41
CHFRQ96EP1 RWDD3-201ENST00000263893 1078 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
CHFRQ96EP1 CSNK2B-203ENST00000375882 948 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
CHFRQ96EP1 CBR1-202ENST00000399191 838 ntTSL 3 BASIC17.6■□□□□ 0.41
CHFRQ96EP1 NABP1-203ENST00000409510 843 ntTSL 5 BASIC17.6■□□□□ 0.41
CHFRQ96EP1 AC018685.2-201ENST00000414065 547 ntTSL 4 BASIC17.6■□□□□ 0.41
CHFRQ96EP1 AL513480.1-201ENST00000451731 511 ntBASIC17.6■□□□□ 0.41
CHFRQ96EP1 AC087163.2-201ENST00000457299 853 ntBASIC17.6■□□□□ 0.41
CHFRQ96EP1 CD99L2-206ENST00000466436 988 ntAPPRIS P4 TSL 1 (best) BASIC17.6■□□□□ 0.41
CHFRQ96EP1 AF131215.3-201ENST00000532453 639 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
CHFRQ96EP1 RPL28-209ENST00000560055 670 ntTSL 3 BASIC17.6■□□□□ 0.41
CHFRQ96EP1 URAHP-203ENST00000517889 1381 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
CHFRQ96EP1 BSCL2-210ENST00000421906 1440 ntAPPRIS P3 TSL 5 BASIC17.6■□□□□ 0.41
CHFRQ96EP1 AC010198.1-201ENST00000500076 1552 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
CHFRQ96EP1 AL121761.2-201ENST00000598007 1648 ntBASIC17.6■□□□□ 0.41
CHFRQ96EP1 PAAF1-205ENST00000535604 1695 ntTSL 5 BASIC17.6■□□□□ 0.41
CHFRQ96EP1 AATK-203ENST00000417379 5081 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
CHFRQ96EP1 CBWD1-201ENST00000314367 1771 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
CHFRQ96EP1 TSKS-201ENST00000246801 1883 ntAPPRIS P2 TSL 1 (best) BASIC17.6■□□□□ 0.41
CHFRQ96EP1 PMAIP1-202ENST00000316660 1948 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
CHFRQ96EP1 CDK1-204ENST00000448257 1948 ntAPPRIS ALT1 TSL 1 (best) BASIC17.6■□□□□ 0.41
CHFRQ96EP1 HOXA-AS3-205ENST00000524304 2063 ntTSL 2 BASIC17.6■□□□□ 0.41
CHFRQ96EP1 COPS7A-215ENST00000543155 2127 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
CHFRQ96EP1 OSBPL9-222ENST00000531828 2210 ntTSL 5 BASIC17.6■□□□□ 0.41
CHFRQ96EP1 KRT6C-201ENST00000252250 2289 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
CHFRQ96EP1 KRT6B-201ENST00000252252 2282 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
CHFRQ96EP1 UMOD-205ENST00000570689 2315 ntAPPRIS P3 TSL 5 BASIC17.6■□□□□ 0.41
CHFRQ96EP1 AHCYL1-202ENST00000369799 4015 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
CHFRQ96EP1 SENP6-202ENST00000370010 4644 ntAPPRIS P3 TSL 1 (best) BASIC17.6■□□□□ 0.41
CHFRQ96EP1 PCDHA2-203ENST00000526136 5254 ntAPPRIS P2 TSL 1 (best) BASIC17.6■□□□□ 0.41
CHFRQ96EP1 CDCA7L-203ENST00000406877 3066 ntAPPRIS P3 TSL 1 (best) BASIC17.59■□□□□ 0.41
CHFRQ96EP1 ZNF839-202ENST00000442396 2987 ntAPPRIS P3 TSL 5 BASIC17.59■□□□□ 0.41
CHFRQ96EP1 CDK11A-205ENST00000378633 2458 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
CHFRQ96EP1 POC1B-GALNT4-201ENST00000547474 2207 ntTSL 2 BASIC17.59■□□□□ 0.41
CHFRQ96EP1 AC254629.1-202ENST00000618276 2112 ntTSL 2 BASIC17.59■□□□□ 0.41
CHFRQ96EP1 SMPD3-211ENST00000568373 2073 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
CHFRQ96EP1 TUBB2B-201ENST00000259818 2020 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CHFRQ96EP1 HEXB-207ENST00000511181 2021 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
CHFRQ96EP1 MST1R-214ENST00000613534 2025 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
CHFRQ96EP1 PPT2-246ENST00000375137 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
CHFRQ96EP1 AC138028.4-201ENST00000564984 1845 ntBASIC17.59■□□□□ 0.41
CHFRQ96EP1 TMEM106C-203ENST00000449758 1414 ntTSL 2 BASIC17.59■□□□□ 0.41
CHFRQ96EP1 CLDN6-201ENST00000328796 1369 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CHFRQ96EP1 ATP23-201ENST00000300145 1245 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CHFRQ96EP1 ABHD11-203ENST00000395147 812 ntTSL 3 BASIC17.59■□□□□ 0.41
CHFRQ96EP1 C1orf226-202ENST00000426197 1049 ntAPPRIS P3 TSL 2 BASIC17.59■□□□□ 0.41
CHFRQ96EP1 LINC01640-201ENST00000452505 550 ntTSL 4 BASIC17.59■□□□□ 0.41
CHFRQ96EP1 NDUFB2-202ENST00000460088 420 ntTSL 3 BASIC17.59■□□□□ 0.41
CHFRQ96EP1 CCND3-213ENST00000510503 1257 ntTSL 3 BASIC17.59■□□□□ 0.41
CHFRQ96EP1 LINC01485-205ENST00000523617 586 ntTSL 2 BASIC17.59■□□□□ 0.41
CHFRQ96EP1 NDUFS7-216ENST00000546283 1060 ntTSL 2 BASIC17.59■□□□□ 0.41
CHFRQ96EP1 AC093520.2-201ENST00000561830 333 ntBASIC17.59■□□□□ 0.41
CHFRQ96EP1 TK1-204ENST00000590430 683 ntTSL 3 BASIC17.59■□□□□ 0.41
CHFRQ96EP1 PCDHGC4-204ENST00000618371 812 ntTSL 3 BASIC17.59■□□□□ 0.41
CHFRQ96EP1 REXO1L3P-201ENST00000622202 1288 ntBASIC17.59■□□□□ 0.41
CHFRQ96EP1 HNRNPH1-250ENST00000630639 123 ntTSL 5 BASIC17.59■□□□□ 0.41
CHFRQ96EP1 ZCCHC24-202ENST00000372336 4933 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CHFRQ96EP1 RNF114-201ENST00000244061 2503 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CHFRQ96EP1 ECHDC1-214ENST00000474289 2443 ntAPPRIS P3 TSL 5 BASIC17.59■□□□□ 0.41
CHFRQ96EP1 ADAMTS8-201ENST00000257359 4010 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CHFRQ96EP1 ANKS3-230ENST00000614075 2387 ntAPPRIS P1 TSL 5 BASIC17.59■□□□□ 0.41
CHFRQ96EP1 HOTTIP-202ENST00000472494 2285 ntTSL 2 BASIC17.59■□□□□ 0.41
CHFRQ96EP1 OGG1-203ENST00000302036 2220 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
CHFRQ96EP1 STK25-203ENST00000403346 2210 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CHFRQ96EP1 CXXC1-212ENST00000589940 2242 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
CHFRQ96EP1 LUC7L-202ENST00000337351 2097 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
CHFRQ96EP1 AC026471.1-201ENST00000564629 3026 ntBASIC17.58■□□□□ 0.41
CHFRQ96EP1 RANBP3-220ENST00000591092 1783 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.41
CHFRQ96EP1 ACP2-206ENST00000529444 1719 ntTSL 2 BASIC17.58■□□□□ 0.41
CHFRQ96EP1 CACNA1B-203ENST00000371355 9647 ntAPPRIS ALT2 TSL 5 BASIC17.58■□□□□ 0.41
CHFRQ96EP1 NPTX2-201ENST00000265634 2700 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
CHFRQ96EP1 HYAL3-202ENST00000359051 1635 ntTSL 5 BASIC17.58■□□□□ 0.41
CHFRQ96EP1 ERLIN1-203ENST00000421367 5792 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
CHFRQ96EP1 TESMIN-201ENST00000255087 2579 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
CHFRQ96EP1 ESR2-201ENST00000267525 1518 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
CHFRQ96EP1 PTPA-223ENST00000452489 2526 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 35.4 ms