Protein–RNA interactions for Protein: Q96AY4

TTC28, Tetratricopeptide repeat protein 28, humanhuman

Predictions only

Length 2,481 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28Q96AY4 PIGQ-209ENST00000470411 2112 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
TTC28Q96AY4 AC092691.1-201ENST00000484092 554 ntTSL 4 BASIC17.4■□□□□ 0.38
TTC28Q96AY4 AC002091.2-201ENST00000585297 402 ntTSL 2 BASIC17.4■□□□□ 0.38
TTC28Q96AY4 AC243967.2-201ENST00000601409 567 ntTSL 4 BASIC17.4■□□□□ 0.38
TTC28Q96AY4 NDRG2-208ENST00000397851 2022 ntAPPRIS P4 TSL 2 BASIC17.4■□□□□ 0.38
TTC28Q96AY4 SNAPC3-207ENST00000610884 2453 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
TTC28Q96AY4 METTL1-202ENST00000324871 2066 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
TTC28Q96AY4 DFFA-201ENST00000377036 1403 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
TTC28Q96AY4 MKRN3-203ENST00000568252 1312 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
TTC28Q96AY4 TBL2-205ENST00000432538 1573 ntTSL 2 BASIC17.4■□□□□ 0.38
TTC28Q96AY4 NGFR-202ENST00000504201 1840 ntTSL 2 BASIC17.4■□□□□ 0.38
TTC28Q96AY4 SPAG16-202ENST00000331683 2177 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
TTC28Q96AY4 CCL25-203ENST00000390669 924 ntAPPRIS P3 TSL 1 (best) BASIC17.4■□□□□ 0.38
TTC28Q96AY4 AC103563.7-201ENST00000448734 478 ntTSL 3 BASIC17.4■□□□□ 0.38
TTC28Q96AY4 CD81-207ENST00000481687 890 ntTSL 2 BASIC17.4■□□□□ 0.38
TTC28Q96AY4 AC074194.1-201ENST00000505025 622 ntTSL 4 BASIC17.4■□□□□ 0.38
TTC28Q96AY4 DERL2-202ENST00000570848 657 ntTSL 5 BASIC17.4■□□□□ 0.38
TTC28Q96AY4 AL354740.1-203ENST00000593917 424 ntTSL 3 BASIC17.4■□□□□ 0.38
TTC28Q96AY4 C20orf141-202ENST00000603872 580 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
TTC28Q96AY4 ZNF596-213ENST00000640035 1163 ntTSL 5 BASIC17.4■□□□□ 0.38
TTC28Q96AY4 FAM238C-204ENST00000640224 1268 ntTSL 5 BASIC17.4■□□□□ 0.38
TTC28Q96AY4 PRR14-203ENST00000542965 2316 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
TTC28Q96AY4 WDR53-201ENST00000332629 1679 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.38
TTC28Q96AY4 HACD3-202ENST00000442729 1332 ntTSL 2 BASIC17.39■□□□□ 0.38
TTC28Q96AY4 BRSK1-202ENST00000326848 2095 ntTSL 5 BASIC17.39■□□□□ 0.38
TTC28Q96AY4 SERPINA4-202ENST00000555095 1987 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
TTC28Q96AY4 TMEM106C-201ENST00000256686 1394 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
TTC28Q96AY4 HCK-207ENST00000520553 2101 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
TTC28Q96AY4 INTS11-250ENST00000620829 1862 ntTSL 2 BASIC17.39■□□□□ 0.37
TTC28Q96AY4 IGF1-201ENST00000307046 1097 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
TTC28Q96AY4 SNCG-201ENST00000348795 684 ntTSL 2 BASIC17.39■□□□□ 0.37
TTC28Q96AY4 IGF1-203ENST00000392904 761 ntTSL 5 BASIC17.39■□□□□ 0.37
TTC28Q96AY4 PSMB9-208ENST00000395330 792 ntTSL 3 BASIC17.39■□□□□ 0.37
TTC28Q96AY4 HFE-208ENST00000397022 1280 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
TTC28Q96AY4 GGCT-203ENST00000409144 836 ntTSL 2 BASIC17.39■□□□□ 0.37
TTC28Q96AY4 RASL12-203ENST00000434605 982 ntTSL 2 BASIC17.39■□□□□ 0.37
TTC28Q96AY4 RPL7P3-201ENST00000441388 714 ntBASIC17.39■□□□□ 0.37
TTC28Q96AY4 HFE-214ENST00000488199 781 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
TTC28Q96AY4 LINC01605-204ENST00000522718 1093 ntTSL 3 BASIC17.39■□□□□ 0.37
TTC28Q96AY4 GGCT-201ENST00000005374 1032 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
TTC28Q96AY4 C12orf10-204ENST00000548632 988 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
TTC28Q96AY4 AC010491.1-203ENST00000564167 638 ntTSL 2 BASIC17.39■□□□□ 0.37
TTC28Q96AY4 PTPRJ-201ENST00000418331 5122 ntAPPRIS P2 TSL 1 (best) BASIC17.39■□□□□ 0.37
TTC28Q96AY4 FBXO27-201ENST00000292853 2330 ntAPPRIS P2 TSL 1 (best) BASIC17.39■□□□□ 0.37
TTC28Q96AY4 LINC00304-201ENST00000321214 2243 ntTSL 2 BASIC17.39■□□□□ 0.37
TTC28Q96AY4 PEX14-201ENST00000356607 1985 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
TTC28Q96AY4 PPP1R7-202ENST00000272983 1954 ntTSL 2 BASIC17.39■□□□□ 0.37
TTC28Q96AY4 STX10-201ENST00000242770 1099 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
TTC28Q96AY4 CCNL1-201ENST00000295925 549 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
TTC28Q96AY4 CTBP2-202ENST00000334808 2130 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
TTC28Q96AY4 OR10H1-201ENST00000334920 1124 ntAPPRIS P1 BASIC17.39■□□□□ 0.37
TTC28Q96AY4 LCE1E-202ENST00000368771 575 ntAPPRIS P2 TSL 3 BASIC17.39■□□□□ 0.37
TTC28Q96AY4 AL157373.2-201ENST00000437559 784 ntTSL 3 BASIC17.39■□□□□ 0.37
TTC28Q96AY4 LAMA5-AS1-203ENST00000478167 690 ntTSL 3 BASIC17.39■□□□□ 0.37
TTC28Q96AY4 AC055876.2-201ENST00000531834 546 ntBASIC17.39■□□□□ 0.37
TTC28Q96AY4 AP000894.3-201ENST00000582554 351 ntTSL 5 BASIC17.39■□□□□ 0.37
TTC28Q96AY4 AC020911.1-201ENST00000591038 578 ntTSL 2 BASIC17.39■□□□□ 0.37
TTC28Q96AY4 RAB34-222ENST00000625712 994 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
TTC28Q96AY4 FAM110A-202ENST00000304189 1856 ntAPPRIS P1 TSL 2 BASIC17.39■□□□□ 0.37
TTC28Q96AY4 EIF3K-203ENST00000545173 1327 ntAPPRIS ALT1 TSL 2 BASIC17.38■□□□□ 0.37
TTC28Q96AY4 RMND1-205ENST00000622845 1484 ntTSL 5 BASIC17.38■□□□□ 0.37
TTC28Q96AY4 ACOT7-204ENST00000377855 1614 ntAPPRIS P4 TSL 1 (best) BASIC17.38■□□□□ 0.37
TTC28Q96AY4 NEURL4-201ENST00000315614 5182 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
TTC28Q96AY4 ST8SIA4-202ENST00000451528 1794 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
TTC28Q96AY4 LLGL2-209ENST00000578363 1393 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
TTC28Q96AY4 SRPK3-201ENST00000370100 1717 ntAPPRIS ALT2 TSL 5 BASIC17.38■□□□□ 0.37
TTC28Q96AY4 EIF4E-201ENST00000280892 1097 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
TTC28Q96AY4 OSM-203ENST00000403463 464 ntTSL 3 BASIC17.38■□□□□ 0.37
TTC28Q96AY4 CENPM-206ENST00000407253 818 ntTSL 2 BASIC17.38■□□□□ 0.37
TTC28Q96AY4 RPL27A-202ENST00000524496 558 ntTSL 3 BASIC17.38■□□□□ 0.37
TTC28Q96AY4 MMP17-203ENST00000535004 719 ntTSL 3 BASIC17.38■□□□□ 0.37
TTC28Q96AY4 DBNDD1-206ENST00000568838 993 ntTSL 2 BASIC17.38■□□□□ 0.37
TTC28Q96AY4 AL136531.2-202ENST00000617804 573 ntAPPRIS P1 TSL 4 BASIC17.38■□□□□ 0.37
TTC28Q96AY4 SLC9A3-201ENST00000264938 2584 ntAPPRIS P3 TSL 1 (best) BASIC17.38■□□□□ 0.37
TTC28Q96AY4 ARFRP1-210ENST00000614942 2554 ntTSL 5 BASIC17.38■□□□□ 0.37
TTC28Q96AY4 DEF8-211ENST00000563795 1767 ntTSL 5 BASIC17.38■□□□□ 0.37
TTC28Q96AY4 AFDN-201ENST00000344191 5249 ntTSL 5 BASIC17.38■□□□□ 0.37
TTC28Q96AY4 SPNS2-201ENST00000329078 3447 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
TTC28Q96AY4 FYN-204ENST00000368678 2573 ntAPPRIS ALT1 TSL 5 BASIC17.38■□□□□ 0.37
TTC28Q96AY4 JMJD6-202ENST00000397625 1603 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
TTC28Q96AY4 TEX13B-201ENST00000302917 1248 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
TTC28Q96AY4 LRCOL1-201ENST00000376608 778 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
TTC28Q96AY4 FAM3B-203ENST00000398647 864 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
TTC28Q96AY4 FAM3B-204ENST00000398652 1125 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
TTC28Q96AY4 AP001471.1-201ENST00000454245 672 ntTSL 3 BASIC17.38■□□□□ 0.37
TTC28Q96AY4 TMEM198B-204ENST00000484016 896 ntBASIC17.38■□□□□ 0.37
TTC28Q96AY4 TPRX2P-201ENST00000535362 881 ntBASIC17.38■□□□□ 0.37
TTC28Q96AY4 C2orf69P2-201ENST00000562032 1123 ntBASIC17.38■□□□□ 0.37
TTC28Q96AY4 FAM171B-202ENST00000612606 940 ntTSL 5 BASIC17.38■□□□□ 0.37
TTC28Q96AY4 FGFR3-210ENST00000613647 4438 ntTSL 5 BASIC17.38■□□□□ 0.37
TTC28Q96AY4 FBLN1-201ENST00000262722 2251 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
TTC28Q96AY4 MAPK14-204ENST00000468133 1376 ntTSL 2 BASIC17.37■□□□□ 0.37
TTC28Q96AY4 SMIM4-203ENST00000477703 1770 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
TTC28Q96AY4 POLE2-202ENST00000539565 1792 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
TTC28Q96AY4 OSBPL9-222ENST00000531828 2210 ntTSL 5 BASIC17.37■□□□□ 0.37
TTC28Q96AY4 GSEC-201ENST00000626810 2289 ntTSL 2 BASIC17.37■□□□□ 0.37
TTC28Q96AY4 STARD3-201ENST00000336308 2132 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
TTC28Q96AY4 CIB3-202ENST00000379859 467 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
TTC28Q96AY4 CAMKMT-203ENST00000403853 1114 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
TTC28Q96AY4 CCKBR-203ENST00000525462 2138 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 34.3 ms