Protein–RNA interactions for Protein: Q8IXS2

CCDC65, Coiled-coil domain-containing protein 65, humanhuman

Predictions only

Length 484 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC65Q8IXS2 IGHV3OR16-7-201ENST00000604106 360 ntBASIC19.3■□□□□ 0.68
CCDC65Q8IXS2 AL121772.3-201ENST00000610840 674 ntBASIC19.3■□□□□ 0.68
CCDC65Q8IXS2 AL117335.1-203ENST00000619200 948 ntTSL 5 BASIC19.3■□□□□ 0.68
CCDC65Q8IXS2 IL2RG-202ENST00000374188 1432 ntTSL 5 BASIC19.3■□□□□ 0.68
CCDC65Q8IXS2 FN1-208ENST00000426059 2388 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
CCDC65Q8IXS2 ICAM3-205ENST00000589261 2024 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
CCDC65Q8IXS2 PCDHGC3-205ENST00000617641 2346 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
CCDC65Q8IXS2 IL12RB2-202ENST00000371000 2454 ntTSL 2 BASIC19.3■□□□□ 0.68
CCDC65Q8IXS2 AL139099.2-201ENST00000555043 2469 ntTSL 2 BASIC19.3■□□□□ 0.68
CCDC65Q8IXS2 SMARCA4-203ENST00000429416 5691 ntTSL 2 BASIC19.3■□□□□ 0.68
CCDC65Q8IXS2 CLDN15-202ENST00000401528 2131 ntAPPRIS P1 TSL 2 BASIC19.3■□□□□ 0.68
CCDC65Q8IXS2 SPAG1-201ENST00000251809 3748 ntAPPRIS P1 TSL 5 BASIC19.29■□□□□ 0.68
CCDC65Q8IXS2 ITGB4-201ENST00000200181 5919 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
CCDC65Q8IXS2 GJA8-201ENST00000369235 1302 ntAPPRIS P1 BASIC19.29■□□□□ 0.68
CCDC65Q8IXS2 AHSA2-202ENST00000394457 6574 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
CCDC65Q8IXS2 LOXL3-205ENST00000409986 2005 ntTSL 2 BASIC19.29■□□□□ 0.68
CCDC65Q8IXS2 RAI2-203ENST00000415486 2037 ntTSL 2 BASIC19.29■□□□□ 0.68
CCDC65Q8IXS2 DIABLO-204ENST00000413918 1859 ntTSL 2 BASIC19.29■□□□□ 0.68
CCDC65Q8IXS2 AC093525.9-201ENST00000624961 1746 ntBASIC19.29■□□□□ 0.68
CCDC65Q8IXS2 MED16-201ENST00000269814 1199 ntTSL 5 BASIC19.29■□□□□ 0.68
CCDC65Q8IXS2 CKLF-202ENST00000345436 571 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
CCDC65Q8IXS2 ZHX1-C8orf76-201ENST00000357082 1257 ntAPPRIS P2 TSL 2 BASIC19.29■□□□□ 0.68
CCDC65Q8IXS2 AL020989.1-201ENST00000422979 469 ntBASIC19.29■□□□□ 0.68
CCDC65Q8IXS2 BPHL-208ENST00000434640 1186 ntTSL 5 BASIC19.29■□□□□ 0.68
CCDC65Q8IXS2 METTL23-204ENST00000586752 904 ntTSL 2 BASIC19.29■□□□□ 0.68
CCDC65Q8IXS2 CHMP2A-208ENST00000601220 885 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CCDC65Q8IXS2 MED16-213ENST00000616387 1078 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
CCDC65Q8IXS2 CHRNA7-207ENST00000635884 1975 ntTSL 5 BASIC19.29■□□□□ 0.68
CCDC65Q8IXS2 SGCE-206ENST00000445866 1666 ntTSL 5 BASIC19.29■□□□□ 0.68
CCDC65Q8IXS2 AL135999.2-201ENST00000622438 1686 ntBASIC19.29■□□□□ 0.68
CCDC65Q8IXS2 PIR-202ENST00000380421 1539 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CCDC65Q8IXS2 SCRIB-203ENST00000377533 5108 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
CCDC65Q8IXS2 ARNT-212ENST00000515192 2892 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
CCDC65Q8IXS2 WT1-201ENST00000332351 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
CCDC65Q8IXS2 WTAP-205ENST00000614346 1623 ntTSL 2 BASIC19.29■□□□□ 0.68
CCDC65Q8IXS2 GOLGA2P9-203ENST00000600260 2033 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
CCDC65Q8IXS2 ETNK2-202ENST00000367201 2431 ntAPPRIS ALT2 TSL 2 BASIC19.29■□□□□ 0.68
CCDC65Q8IXS2 KIAA0895-208ENST00000440378 2441 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CCDC65Q8IXS2 DPH6-AS1-201ENST00000501169 1477 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
CCDC65Q8IXS2 CEBPG-201ENST00000284000 4109 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CCDC65Q8IXS2 PODXL-202ENST00000378555 2105 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
CCDC65Q8IXS2 TRIM33-201ENST00000358465 8339 ntAPPRIS P4 TSL 1 (best) BASIC19.28■□□□□ 0.68
CCDC65Q8IXS2 CFAP100-201ENST00000352312 2086 ntAPPRIS P2 TSL 2 BASIC19.28■□□□□ 0.68
CCDC65Q8IXS2 KXD1-201ENST00000222307 1426 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CCDC65Q8IXS2 OPRK1-205ENST00000612786 5196 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
CCDC65Q8IXS2 ENC1-207ENST00000618628 5657 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
CCDC65Q8IXS2 PARVG-205ENST00000422871 3462 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
CCDC65Q8IXS2 TRA2A-212ENST00000621813 1931 ntAPPRIS ALT2 TSL 2 BASIC19.28■□□□□ 0.68
CCDC65Q8IXS2 SLC50A1-201ENST00000303343 1137 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
CCDC65Q8IXS2 ZNF337-AS1-204ENST00000428254 817 ntTSL 5 BASIC19.28■□□□□ 0.68
CCDC65Q8IXS2 AL391650.1-205ENST00000433939 579 ntAPPRIS P1 TSL 3 BASIC19.28■□□□□ 0.68
CCDC65Q8IXS2 AC132008.2-207ENST00000454517 770 ntBASIC19.28■□□□□ 0.68
CCDC65Q8IXS2 AP1S2-206ENST00000545766 576 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
CCDC65Q8IXS2 PRELID1P1-202ENST00000567272 903 ntBASIC19.28■□□□□ 0.68
CCDC65Q8IXS2 PRR29-207ENST00000580752 458 ntTSL 3 BASIC19.28■□□□□ 0.68
CCDC65Q8IXS2 ZNF554-204ENST00000591265 1148 ntTSL 5 BASIC19.28■□□□□ 0.68
CCDC65Q8IXS2 MBOAT1-201ENST00000324607 1794 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CCDC65Q8IXS2 LGALS12-205ENST00000425950 1789 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
CCDC65Q8IXS2 DIABLO-206ENST00000443649 2250 ntAPPRIS P1 TSL 2 BASIC19.28■□□□□ 0.68
CCDC65Q8IXS2 PML-220ENST00000569477 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
CCDC65Q8IXS2 MCF2L-203ENST00000375604 6445 ntAPPRIS P3 TSL 2 BASIC19.28■□□□□ 0.68
CCDC65Q8IXS2 PARD3-201ENST00000340077 3518 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
CCDC65Q8IXS2 DNM1-202ENST00000372923 3244 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
CCDC65Q8IXS2 FAM20A-205ENST00000592554 2955 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CCDC65Q8IXS2 STXBP3-201ENST00000370008 2478 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CCDC65Q8IXS2 FAM153A-203ENST00000440605 1966 ntAPPRIS P2 TSL 1 (best) BASIC19.28■□□□□ 0.68
CCDC65Q8IXS2 GSKIP-207ENST00000556095 3834 ntAPPRIS P1 TSL 2 BASIC19.28■□□□□ 0.68
CCDC65Q8IXS2 ASB10-202ENST00000377867 1738 ntTSL 2 BASIC19.28■□□□□ 0.68
CCDC65Q8IXS2 COL4A2-201ENST00000360467 6281 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
CCDC65Q8IXS2 TBX6-203ENST00000553607 2162 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
CCDC65Q8IXS2 CLDN7-203ENST00000538261 1923 ntTSL 5 BASIC19.27■□□□□ 0.68
CCDC65Q8IXS2 INSIG1-203ENST00000344756 2623 ntTSL 5 BASIC19.27■□□□□ 0.68
CCDC65Q8IXS2 CABP4-202ENST00000438189 1426 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
CCDC65Q8IXS2 HTR1A-201ENST00000323865 1778 ntAPPRIS P1 BASIC19.27■□□□□ 0.68
CCDC65Q8IXS2 P2RY6-204ENST00000393592 1515 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
CCDC65Q8IXS2 PEX13-204ENST00000444100 1533 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
CCDC65Q8IXS2 SPTBN4-212ENST00000598249 8070 ntAPPRIS P2 TSL 1 (best) BASIC19.27■□□□□ 0.68
CCDC65Q8IXS2 VSIG10L2-202ENST00000638636 2304 ntAPPRIS P1 TSL 5 BASIC19.27■□□□□ 0.68
CCDC65Q8IXS2 SIT1-201ENST00000259608 1231 ntAPPRIS P2 TSL 1 (best) BASIC19.27■□□□□ 0.68
CCDC65Q8IXS2 ROMO1-203ENST00000374077 422 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
CCDC65Q8IXS2 CRELD2-202ENST00000403427 1242 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
CCDC65Q8IXS2 SPDYE21P-201ENST00000413323 827 ntBASIC19.27■□□□□ 0.68
CCDC65Q8IXS2 SIGLEC30P-201ENST00000455569 941 ntBASIC19.27■□□□□ 0.68
CCDC65Q8IXS2 GLI4-207ENST00000521682 1082 ntTSL 3 BASIC19.27■□□□□ 0.68
CCDC65Q8IXS2 RAP1B-229ENST00000543393 874 ntTSL 3 BASIC19.27■□□□□ 0.68
CCDC65Q8IXS2 METRN-205ENST00000568415 612 ntAPPRIS ALT2 TSL 3 BASIC19.27■□□□□ 0.68
CCDC65Q8IXS2 AC016876.1-204ENST00000573187 679 ntTSL 3 BASIC19.27■□□□□ 0.68
CCDC65Q8IXS2 AC020934.1-201ENST00000588469 739 ntTSL 3 BASIC19.27■□□□□ 0.68
CCDC65Q8IXS2 PTPN11-207ENST00000639857 801 ntTSL 5 BASIC19.27■□□□□ 0.68
CCDC65Q8IXS2 ZSWIM8-223ENST00000605216 6004 ntAPPRIS P2 TSL 1 (best) BASIC19.27■□□□□ 0.68
CCDC65Q8IXS2 NUDT9-201ENST00000302174 1701 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
CCDC65Q8IXS2 EMILIN3-201ENST00000332312 3796 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
CCDC65Q8IXS2 PARVG-206ENST00000444313 3523 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
CCDC65Q8IXS2 ASB6-203ENST00000450050 4535 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
CCDC65Q8IXS2 MIB2-201ENST00000355826 3290 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.67
CCDC65Q8IXS2 C6orf47-202ENST00000375911 2475 ntAPPRIS P1 BASIC19.27■□□□□ 0.67
CCDC65Q8IXS2 CHAC1-204ENST00000617768 1560 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
CCDC65Q8IXS2 CDK11B-207ENST00000626918 2457 ntTSL 5 BASIC19.27■□□□□ 0.67
CCDC65Q8IXS2 CDK11B-208ENST00000629289 2490 ntTSL 5 BASIC19.27■□□□□ 0.67
CCDC65Q8IXS2 CDK11B-209ENST00000629312 2496 ntTSL 5 BASIC19.27■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 36.6 ms