Protein–RNA interactions for Protein: Q7Z494

NPHP3, Nephrocystin-3, humanhuman

Predictions only

Length 1,330 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3Q7Z494 LONRF3-202ENST00000371628 2550 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
NPHP3Q7Z494 LINC00683-201ENST00000578803 2221 ntTSL 2 BASIC23.34■■□□□ 1.33
NPHP3Q7Z494 BAGE2-202ENST00000474011 1482 ntTSL 2 BASIC23.34■■□□□ 1.33
NPHP3Q7Z494 PSMA1-209ENST00000530457 1527 ntTSL 5 BASIC23.34■■□□□ 1.33
NPHP3Q7Z494 AC012569.1-201ENST00000591191 1524 ntBASIC23.34■■□□□ 1.33
NPHP3Q7Z494 FOXP1-210ENST00000484350 1996 ntTSL 2 BASIC23.34■■□□□ 1.33
NPHP3Q7Z494 SERPINB6-208ENST00000616722 2047 ntTSL 2 BASIC23.34■■□□□ 1.33
NPHP3Q7Z494 VSTM2A-203ENST00000404951 2521 ntTSL 5 BASIC23.34■■□□□ 1.33
NPHP3Q7Z494 PAFAH1B2-202ENST00000419197 2517 ntTSL 2 BASIC23.34■■□□□ 1.33
NPHP3Q7Z494 TPD52L1-202ENST00000368388 2147 ntTSL 1 (best) BASIC23.34■■□□□ 1.33
NPHP3Q7Z494 MRI1-201ENST00000040663 1735 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
NPHP3Q7Z494 GAS2L1P2-202ENST00000442849 2262 ntTSL 1 (best) BASIC23.34■■□□□ 1.33
NPHP3Q7Z494 NPEPL1-203ENST00000525817 1780 ntTSL 2 BASIC23.34■■□□□ 1.33
NPHP3Q7Z494 COX6A1-201ENST00000229379 572 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
NPHP3Q7Z494 MIR346-201ENST00000362234 95 ntBASIC23.33■■□□□ 1.33
NPHP3Q7Z494 ATP5G2P4-201ENST00000442175 420 ntBASIC23.33■■□□□ 1.33
NPHP3Q7Z494 AC106872.10-201ENST00000503778 747 ntTSL 3 BASIC23.33■■□□□ 1.33
NPHP3Q7Z494 TOMM5-205ENST00000544379 635 ntTSL 2 BASIC23.33■■□□□ 1.33
NPHP3Q7Z494 VAT1-205ENST00000587173 1174 ntTSL 2 BASIC23.33■■□□□ 1.33
NPHP3Q7Z494 AC247036.6-201ENST00000632950 410 ntAPPRIS P1 BASIC23.33■■□□□ 1.33
NPHP3Q7Z494 CU639417.3-201ENST00000624240 1404 ntBASIC23.33■■□□□ 1.33
NPHP3Q7Z494 CCDC28A-202ENST00000611852 1505 ntTSL 1 (best) BASIC23.33■■□□□ 1.33
NPHP3Q7Z494 EOMES-202ENST00000449599 2829 ntTSL 1 (best) BASIC23.33■■□□□ 1.33
NPHP3Q7Z494 PCOLCE-AS1-201ENST00000442166 2537 ntTSL 2 BASIC23.33■■□□□ 1.32
NPHP3Q7Z494 HOXC11-201ENST00000243082 2039 ntTSL 3 BASIC23.33■■□□□ 1.32
NPHP3Q7Z494 ALG5-201ENST00000239891 1154 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.32
NPHP3Q7Z494 JTB-201ENST00000271843 1287 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.32
NPHP3Q7Z494 TPM2-201ENST00000329305 1018 ntAPPRIS ALT1 TSL 2 BASIC23.33■■□□□ 1.32
NPHP3Q7Z494 HLA-DMA-201ENST00000374843 1123 ntAPPRIS P1 BASIC23.33■■□□□ 1.32
NPHP3Q7Z494 ARSEP1-201ENST00000420443 635 ntBASIC23.33■■□□□ 1.32
NPHP3Q7Z494 AL645941.2-201ENST00000429234 612 ntAPPRIS P1 TSL 2 BASIC23.33■■□□□ 1.32
NPHP3Q7Z494 AC138466.1-201ENST00000535242 391 ntTSL 3 BASIC23.33■■□□□ 1.32
NPHP3Q7Z494 MIR4453-201ENST00000584019 89 ntBASIC23.33■■□□□ 1.32
NPHP3Q7Z494 SLC6A9-201ENST00000357730 2168 ntTSL 1 (best) BASIC23.33■■□□□ 1.32
NPHP3Q7Z494 TNFSF11-203ENST00000398795 2199 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.32
NPHP3Q7Z494 OSBPL9-222ENST00000531828 2210 ntTSL 5 BASIC23.32■■□□□ 1.32
NPHP3Q7Z494 LUC7L-204ENST00000397783 1504 ntTSL 2 BASIC23.32■■□□□ 1.32
NPHP3Q7Z494 GRM6-201ENST00000231188 6143 ntAPPRIS P1 TSL 2 BASIC23.32■■□□□ 1.32
NPHP3Q7Z494 CDK10-202ENST00000353379 1798 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
NPHP3Q7Z494 DENND6A-201ENST00000311128 4655 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
NPHP3Q7Z494 PITX2-201ENST00000306732 2320 ntAPPRIS P4 TSL 1 (best) BASIC23.32■■□□□ 1.32
NPHP3Q7Z494 NGLY1-202ENST00000280700 2473 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
NPHP3Q7Z494 ACSL6-205ENST00000379246 2622 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
NPHP3Q7Z494 ZNF554-201ENST00000317243 2736 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
NPHP3Q7Z494 TOMM5-201ENST00000321301 751 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
NPHP3Q7Z494 PSEN2-206ENST00000472139 1163 ntTSL 5 BASIC23.32■■□□□ 1.32
NPHP3Q7Z494 GLI4-207ENST00000521682 1082 ntTSL 3 BASIC23.32■■□□□ 1.32
NPHP3Q7Z494 TNNT1-211ENST00000588426 683 ntTSL 5 BASIC23.32■■□□□ 1.32
NPHP3Q7Z494 AL590560.3-201ENST00000623350 461 ntBASIC23.32■■□□□ 1.32
NPHP3Q7Z494 RAD51D-201ENST00000335858 1353 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
NPHP3Q7Z494 PSMA8-202ENST00000343848 1675 ntTSL 1 (best) BASIC23.31■■□□□ 1.32
NPHP3Q7Z494 TEAD4-202ENST00000359864 1690 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
NPHP3Q7Z494 SNHG18-201ENST00000508179 1799 ntTSL 2 BASIC23.31■■□□□ 1.32
NPHP3Q7Z494 TTC22-201ENST00000371274 2149 ntTSL 2 BASIC23.31■■□□□ 1.32
NPHP3Q7Z494 IGFALS-202ENST00000415638 2136 ntTSL 2 BASIC23.31■■□□□ 1.32
NPHP3Q7Z494 CXXC1-212ENST00000589940 2242 ntTSL 1 (best) BASIC23.31■■□□□ 1.32
NPHP3Q7Z494 ETV4-201ENST00000319349 2429 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
NPHP3Q7Z494 C16orf70-201ENST00000219139 2865 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
NPHP3Q7Z494 CROCCP3-202ENST00000420820 1947 ntBASIC23.31■■□□□ 1.32
NPHP3Q7Z494 AC022144.1-201ENST00000602255 1580 ntBASIC23.31■■□□□ 1.32
NPHP3Q7Z494 SVOPL-204ENST00000436657 1420 ntTSL 1 (best) BASIC23.31■■□□□ 1.32
NPHP3Q7Z494 THAP3-201ENST00000054650 1366 ntAPPRIS ALT2 TSL 1 (best) BASIC23.31■■□□□ 1.32
NPHP3Q7Z494 VHLL-201ENST00000339922 676 ntAPPRIS P1 BASIC23.31■■□□□ 1.32
NPHP3Q7Z494 CHIA-203ENST00000353665 1214 ntTSL 1 (best) BASIC23.31■■□□□ 1.32
NPHP3Q7Z494 MB-201ENST00000359787 1170 ntAPPRIS P1 TSL 2 BASIC23.31■■□□□ 1.32
NPHP3Q7Z494 WFDC3-204ENST00000372632 704 ntTSL 3 BASIC23.31■■□□□ 1.32
NPHP3Q7Z494 C9orf24-204ENST00000379127 596 ntTSL 3 BASIC23.31■■□□□ 1.32
NPHP3Q7Z494 LRRC30-201ENST00000383467 923 ntAPPRIS P1 BASIC23.31■■□□□ 1.32
NPHP3Q7Z494 MB-202ENST00000397326 1197 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
NPHP3Q7Z494 MB-203ENST00000397328 1153 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
NPHP3Q7Z494 SPTLC1P1-201ENST00000447199 261 ntBASIC23.31■■□□□ 1.32
NPHP3Q7Z494 KRT17P7-201ENST00000451704 1104 ntBASIC23.31■■□□□ 1.32
NPHP3Q7Z494 AL139349.1-201ENST00000530479 577 ntTSL 4 BASIC23.31■■□□□ 1.32
NPHP3Q7Z494 FAM212B-207ENST00000534365 1217 ntTSL 5 BASIC23.31■■□□□ 1.32
NPHP3Q7Z494 FKBP11-208ENST00000550765 1030 ntAPPRIS P3 TSL 1 (best) BASIC23.31■■□□□ 1.32
NPHP3Q7Z494 AC004233.1-201ENST00000570515 608 ntTSL 4 BASIC23.31■■□□□ 1.32
NPHP3Q7Z494 AC004233.3-201ENST00000607794 1269 ntBASIC23.31■■□□□ 1.32
NPHP3Q7Z494 NKX6-1-201ENST00000295886 2628 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
NPHP3Q7Z494 PLIN5-201ENST00000381848 2470 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
NPHP3Q7Z494 MORF4L1-201ENST00000331268 2359 ntTSL 1 (best) BASIC23.3■■□□□ 1.32
NPHP3Q7Z494 AL138828.1-202ENST00000576956 1881 ntTSL 5 BASIC23.3■■□□□ 1.32
NPHP3Q7Z494 ASAP2-202ENST00000315273 5582 ntAPPRIS ALT2 TSL 1 (best) BASIC23.3■■□□□ 1.32
NPHP3Q7Z494 SLC35G6-201ENST00000412468 1697 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
NPHP3Q7Z494 HNRNPRP1-201ENST00000453465 1695 ntBASIC23.3■■□□□ 1.32
NPHP3Q7Z494 C1QTNF1-201ENST00000311661 2624 ntTSL 2 BASIC23.3■■□□□ 1.32
NPHP3Q7Z494 GAS6-201ENST00000327773 2490 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
NPHP3Q7Z494 ITGA9-AS1-201ENST00000366441 895 ntTSL 3 BASIC23.3■■□□□ 1.32
NPHP3Q7Z494 KRTAP6-3-201ENST00000391624 636 ntAPPRIS P1 BASIC23.3■■□□□ 1.32
NPHP3Q7Z494 IL32-206ENST00000440815 920 ntAPPRIS P4 TSL 2 BASIC23.3■■□□□ 1.32
NPHP3Q7Z494 IL32-207ENST00000444393 892 ntAPPRIS P4 TSL 2 BASIC23.3■■□□□ 1.32
NPHP3Q7Z494 SS18L2-202ENST00000447630 1047 ntAPPRIS P1 TSL 2 BASIC23.3■■□□□ 1.32
NPHP3Q7Z494 SLC50A1-209ENST00000484157 886 ntTSL 3 BASIC23.3■■□□□ 1.32
NPHP3Q7Z494 IL32-219ENST00000531965 746 ntAPPRIS ALT2 TSL 1 (best) BASIC23.3■■□□□ 1.32
NPHP3Q7Z494 TMEM63A-209ENST00000537914 1018 ntTSL 1 (best) BASIC23.3■■□□□ 1.32
NPHP3Q7Z494 IL32-226ENST00000548476 1014 ntAPPRIS ALT2 TSL 2 BASIC23.3■■□□□ 1.32
NPHP3Q7Z494 AC116003.1-201ENST00000578340 536 ntTSL 3 BASIC23.3■■□□□ 1.32
NPHP3Q7Z494 AC027307.2-201ENST00000591252 911 ntBASIC23.3■■□□□ 1.32
NPHP3Q7Z494 DACT2-204ENST00000610183 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC23.3■■□□□ 1.32
NPHP3Q7Z494 MEN1-201ENST00000312049 2761 ntAPPRIS ALT1 TSL 1 (best) BASIC23.3■■□□□ 1.32
NPHP3Q7Z494 TMEM143-202ENST00000377431 1960 ntTSL 1 (best) BASIC23.3■■□□□ 1.32
Retrieved 100 of 98,524 protein–RNA pairs in 73.9 ms