Protein–RNA interactions for Protein: Q6NUP7

PPP4R4, Serine/threonine-protein phosphatase 4 regulatory subunit 4, humanhuman

Predictions only

Length 873 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PPP4R4Q6NUP7 PEX11G-201ENST00000221480 1062 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
PPP4R4Q6NUP7 ILF2-202ENST00000368681 726 ntTSL 2 BASIC16.71■□□□□ 0.27
PPP4R4Q6NUP7 RASGRP2-205ENST00000377489 583 ntTSL 3 BASIC16.71■□□□□ 0.27
PPP4R4Q6NUP7 AC007731.5-201ENST00000429594 644 ntAPPRIS P1 TSL 5 BASIC16.71■□□□□ 0.27
PPP4R4Q6NUP7 LINC01063-201ENST00000441644 348 ntTSL 3 BASIC16.71■□□□□ 0.27
PPP4R4Q6NUP7 AC013402.1-201ENST00000456999 561 ntTSL 4 BASIC16.71■□□□□ 0.27
PPP4R4Q6NUP7 KRT18P35-201ENST00000510488 1269 ntBASIC16.71■□□□□ 0.27
PPP4R4Q6NUP7 AZIN1-AS1-214ENST00000522850 473 ntTSL 3 BASIC16.71■□□□□ 0.27
PPP4R4Q6NUP7 GCSHP2-201ENST00000560971 527 ntBASIC16.71■□□□□ 0.27
PPP4R4Q6NUP7 AL445228.2-201ENST00000605589 952 ntBASIC16.71■□□□□ 0.27
PPP4R4Q6NUP7 COLCA2-205ENST00000614153 1264 ntTSL 3 BASIC16.71■□□□□ 0.27
PPP4R4Q6NUP7 AC112497.1-201ENST00000624824 639 ntBASIC16.71■□□□□ 0.27
PPP4R4Q6NUP7 RASSF7-205ENST00000454668 1450 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
PPP4R4Q6NUP7 SLC27A4-202ENST00000372870 1557 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
PPP4R4Q6NUP7 CCT6A-201ENST00000275603 2719 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
PPP4R4Q6NUP7 CCDC187-205ENST00000638797 10126 ntAPPRIS ALT2 TSL 5 BASIC16.71■□□□□ 0.27
PPP4R4Q6NUP7 TNKS-211ENST00000520408 1964 ntTSL 2 BASIC16.71■□□□□ 0.27
PPP4R4Q6NUP7 PRX-202ENST00000324001 4855 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
PPP4R4Q6NUP7 MGEA5-202ENST00000361464 5155 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
PPP4R4Q6NUP7 CRADD-202ENST00000542893 1403 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
PPP4R4Q6NUP7 AC021148.1-201ENST00000513652 1532 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
PPP4R4Q6NUP7 SPDYE5-203ENST00000625065 1700 ntAPPRIS P2 TSL 5 BASIC16.7■□□□□ 0.26
PPP4R4Q6NUP7 ECE2-201ENST00000324557 1823 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
PPP4R4Q6NUP7 MAGED2-213ENST00000627068 1811 ntAPPRIS ALT2 TSL 5 BASIC16.7■□□□□ 0.26
PPP4R4Q6NUP7 PRRX1-202ENST00000367760 2217 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
PPP4R4Q6NUP7 SPIN3-224ENST00000639583 2245 ntTSL 5 BASIC16.7■□□□□ 0.26
PPP4R4Q6NUP7 ARL5B-201ENST00000377275 7196 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
PPP4R4Q6NUP7 ASPH-211ENST00000518068 2744 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
PPP4R4Q6NUP7 GTF3C4-201ENST00000372146 9043 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
PPP4R4Q6NUP7 RABL2A-204ENST00000393167 2179 ntAPPRIS P3 TSL 1 (best) BASIC16.7■□□□□ 0.26
PPP4R4Q6NUP7 CEP76-202ENST00000423709 2197 ntTSL 2 BASIC16.7■□□□□ 0.26
PPP4R4Q6NUP7 AL603756.1-201ENST00000606511 2163 ntBASIC16.7■□□□□ 0.26
PPP4R4Q6NUP7 ANXA8-202ENST00000583448 1971 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
PPP4R4Q6NUP7 MIS18BP1-212ENST00000627697 1950 ntTSL 5 BASIC16.7■□□□□ 0.26
PPP4R4Q6NUP7 TVP23C-204ENST00000438826 1852 ntAPPRIS ALT1 TSL 1 (best) BASIC16.7■□□□□ 0.26
PPP4R4Q6NUP7 SQOR-208ENST00000568606 1792 ntAPPRIS P1 TSL 5 BASIC16.7■□□□□ 0.26
PPP4R4Q6NUP7 DNAJC4-201ENST00000321460 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
PPP4R4Q6NUP7 CDHR4-201ENST00000343366 1188 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
PPP4R4Q6NUP7 KIRREL3-AS3-201ENST00000404882 831 ntBASIC16.7■□□□□ 0.26
PPP4R4Q6NUP7 AC131097.3-201ENST00000413820 1228 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
PPP4R4Q6NUP7 LINC01534-202ENST00000433232 554 ntTSL 3 BASIC16.7■□□□□ 0.26
PPP4R4Q6NUP7 MUC1-212ENST00000457295 1161 ntAPPRIS ALT2 TSL 2 BASIC16.7■□□□□ 0.26
PPP4R4Q6NUP7 FIS1-207ENST00000474120 915 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
PPP4R4Q6NUP7 AC019068.1-202ENST00000483218 768 ntTSL 3 BASIC16.7■□□□□ 0.26
PPP4R4Q6NUP7 MRPL46-202ENST00000558531 1002 ntTSL 2 BASIC16.7■□□□□ 0.26
PPP4R4Q6NUP7 ETFA-216ENST00000560726 942 ntTSL 3 BASIC16.7■□□□□ 0.26
PPP4R4Q6NUP7 NME3-204ENST00000563498 920 ntTSL 2 BASIC16.7■□□□□ 0.26
PPP4R4Q6NUP7 NEK4P2-201ENST00000580004 1012 ntBASIC16.7■□□□□ 0.26
PPP4R4Q6NUP7 AC239803.1-201ENST00000594189 1278 ntTSL 5 BASIC16.7■□□□□ 0.26
PPP4R4Q6NUP7 AC004076.1-201ENST00000596831 664 ntAPPRIS P1 TSL 2 BASIC16.7■□□□□ 0.26
PPP4R4Q6NUP7 AC022154.1-201ENST00000600303 766 ntTSL 3 BASIC16.7■□□□□ 0.26
PPP4R4Q6NUP7 SMIM8-209ENST00000608868 815 ntAPPRIS P1 TSL 5 BASIC16.7■□□□□ 0.26
PPP4R4Q6NUP7 SFT2D3-201ENST00000310981 3735 ntAPPRIS P1 BASIC16.7■□□□□ 0.26
PPP4R4Q6NUP7 AHRR-201ENST00000316418 5661 ntAPPRIS P3 TSL 1 (best) BASIC16.7■□□□□ 0.26
PPP4R4Q6NUP7 PCDHA1-201ENST00000378133 2726 ntBASIC16.7■□□□□ 0.26
PPP4R4Q6NUP7 HAGH-202ENST00000397356 2984 ntAPPRIS P3 TSL 1 (best) BASIC16.7■□□□□ 0.26
PPP4R4Q6NUP7 CPEB2-205ENST00000442003 6797 ntAPPRIS ALT2 TSL 5 BASIC16.7■□□□□ 0.26
PPP4R4Q6NUP7 L3HYPDH-201ENST00000247194 1527 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
PPP4R4Q6NUP7 AC002310.5-201ENST00000569360 1515 ntAPPRIS P1 TSL 2 BASIC16.7■□□□□ 0.26
PPP4R4Q6NUP7 SLC5A2-201ENST00000330498 2271 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
PPP4R4Q6NUP7 HAGHL-203ENST00000389703 1347 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
PPP4R4Q6NUP7 ALDH3B1-206ENST00000615463 1300 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
PPP4R4Q6NUP7 POLI-208ENST00000579534 6133 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
PPP4R4Q6NUP7 AC100803.2-201ENST00000562459 1963 ntBASIC16.69■□□□□ 0.26
PPP4R4Q6NUP7 FAM222B-211ENST00000582266 2613 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
PPP4R4Q6NUP7 RIC8B-203ENST00000392839 2440 ntAPPRIS P3 TSL 1 (best) BASIC16.69■□□□□ 0.26
PPP4R4Q6NUP7 TRPV4-205ENST00000537083 2436 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
PPP4R4Q6NUP7 PACS1-201ENST00000320580 4392 ntAPPRIS P2 TSL 1 (best) BASIC16.69■□□□□ 0.26
PPP4R4Q6NUP7 SESN1-204ENST00000436639 3509 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
PPP4R4Q6NUP7 YPEL3-202ENST00000398841 1588 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
PPP4R4Q6NUP7 CLDN15-202ENST00000401528 2131 ntAPPRIS P1 TSL 2 BASIC16.69■□□□□ 0.26
PPP4R4Q6NUP7 LUC7L-201ENST00000293872 1456 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
PPP4R4Q6NUP7 AFG3L2-201ENST00000269143 3247 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
PPP4R4Q6NUP7 CYMP-AS1-201ENST00000457402 2351 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
PPP4R4Q6NUP7 GGCT-202ENST00000275428 1173 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
PPP4R4Q6NUP7 SYCE1L-201ENST00000378644 858 ntAPPRIS P2 TSL 5 BASIC16.69■□□□□ 0.26
PPP4R4Q6NUP7 PLCB1-204ENST00000404098 1260 ntTSL 3 BASIC16.69■□□□□ 0.26
PPP4R4Q6NUP7 TMA7-201ENST00000438607 561 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
PPP4R4Q6NUP7 AL109797.1-201ENST00000452501 835 ntTSL 2 BASIC16.69■□□□□ 0.26
PPP4R4Q6NUP7 AL136307.1-201ENST00000454882 411 ntTSL 2 BASIC16.69■□□□□ 0.26
PPP4R4Q6NUP7 CCNG1-211ENST00000512163 919 ntTSL 2 BASIC16.69■□□□□ 0.26
PPP4R4Q6NUP7 CASKIN2-205ENST00000581870 1612 ntTSL 2 BASIC16.69■□□□□ 0.26
PPP4R4Q6NUP7 SYTL3-202ENST00000360448 2504 ntAPPRIS ALT1 TSL 5 BASIC16.69■□□□□ 0.26
PPP4R4Q6NUP7 BTBD3-201ENST00000254977 4686 ntAPPRIS ALT1 TSL 2 BASIC16.69■□□□□ 0.26
PPP4R4Q6NUP7 INPP4A-202ENST00000409016 9996 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
PPP4R4Q6NUP7 DYM-201ENST00000269445 5049 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
PPP4R4Q6NUP7 ACSM2A-213ENST00000575690 2322 ntAPPRIS P1 TSL 2 BASIC16.69■□□□□ 0.26
PPP4R4Q6NUP7 TTC13-202ENST00000366662 3112 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
PPP4R4Q6NUP7 ABR-203ENST00000536794 2213 ntTSL 2 BASIC16.69■□□□□ 0.26
PPP4R4Q6NUP7 ITGB1BP1-204ENST00000360635 4859 ntAPPRIS P1 TSL 5 BASIC16.69■□□□□ 0.26
PPP4R4Q6NUP7 C21orf59-201ENST00000290155 1692 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
PPP4R4Q6NUP7 MREG-205ENST00000620139 2618 ntAPPRIS P1 TSL 2 BASIC16.68■□□□□ 0.26
PPP4R4Q6NUP7 ZNF707-223ENST00000532205 2865 ntAPPRIS P1 TSL 2 BASIC16.68■□□□□ 0.26
PPP4R4Q6NUP7 SEMA5B-202ENST00000357599 4792 ntAPPRIS P3 TSL 1 (best) BASIC16.68■□□□□ 0.26
PPP4R4Q6NUP7 SLC25A22-201ENST00000320230 2796 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
PPP4R4Q6NUP7 VIPR1-217ENST00000543411 2681 ntTSL 2 BASIC16.68■□□□□ 0.26
PPP4R4Q6NUP7 VRK1-201ENST00000216639 1745 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
PPP4R4Q6NUP7 OSBPL10-201ENST00000396556 6600 ntAPPRIS P3 TSL 1 (best) BASIC16.68■□□□□ 0.26
PPP4R4Q6NUP7 ARL4C-202ENST00000390645 4013 ntAPPRIS P1 BASIC16.68■□□□□ 0.26
PPP4R4Q6NUP7 AC074117.1-201ENST00000447070 3060 ntTSL 2 BASIC16.68■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 55.3 ms