Protein–RNA interactions for Protein: Q5TC82

RC3H1, Roquin-1, humanhuman

Known RBP Predictions only

Length 1,133 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RC3H1Q5TC82 HLA-DQB1-201ENST00000374943 1656 ntBASIC21.67■■□□□ 1.06
RC3H1Q5TC82 SARS2-212ENST00000600042 1630 ntTSL 2 BASIC21.67■■□□□ 1.06
RC3H1Q5TC82 PDLIM7-203ENST00000359895 1567 ntAPPRIS ALT2 TSL 1 (best) BASIC21.67■■□□□ 1.06
RC3H1Q5TC82 CAMKV-204ENST00000466940 1475 ntTSL 2 BASIC21.67■■□□□ 1.06
RC3H1Q5TC82 GMNN-201ENST00000230056 1262 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
RC3H1Q5TC82 POP7-201ENST00000303151 927 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
RC3H1Q5TC82 AC092580.3-201ENST00000430932 139 ntBASIC21.67■■□□□ 1.06
RC3H1Q5TC82 PIGZ-204ENST00000443835 675 ntTSL 4 BASIC21.67■■□□□ 1.06
RC3H1Q5TC82 PPP6R2P1-201ENST00000450880 1275 ntBASIC21.67■■□□□ 1.06
RC3H1Q5TC82 IGHV3-42-201ENST00000520410 361 ntBASIC21.67■■□□□ 1.06
RC3H1Q5TC82 AC090607.3-202ENST00000558971 383 ntTSL 3 BASIC21.67■■□□□ 1.06
RC3H1Q5TC82 AC133550.1-201ENST00000563565 295 ntTSL 3 BASIC21.67■■□□□ 1.06
RC3H1Q5TC82 COQ4-205ENST00000609948 956 ntTSL 2 BASIC21.67■■□□□ 1.06
RC3H1Q5TC82 AC008267.7-201ENST00000624570 1194 ntBASIC21.67■■□□□ 1.06
RC3H1Q5TC82 IL17RE-206ENST00000454190 2757 ntTSL 2 BASIC21.67■■□□□ 1.06
RC3H1Q5TC82 CD55-206ENST00000391921 2433 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
RC3H1Q5TC82 ACOT4-201ENST00000326303 2362 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
RC3H1Q5TC82 GGT2-201ENST00000401924 2366 ntAPPRIS P1 TSL 5 BASIC21.67■■□□□ 1.06
RC3H1Q5TC82 BCS1L-212ENST00000439945 1483 ntAPPRIS P1 TSL 5 BASIC21.66■■□□□ 1.06
RC3H1Q5TC82 CAMKV-217ENST00000620470 1485 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
RC3H1Q5TC82 MAFF-207ENST00000538999 2365 ntTSL 2 BASIC21.66■■□□□ 1.06
RC3H1Q5TC82 ERCC1-201ENST00000013807 1278 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
RC3H1Q5TC82 NME3-201ENST00000219302 1069 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
RC3H1Q5TC82 PNKD-201ENST00000248451 758 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
RC3H1Q5TC82 EDF1-203ENST00000371649 790 ntTSL 2 BASIC21.66■■□□□ 1.06
RC3H1Q5TC82 ACTN4-202ENST00000390009 2102 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
RC3H1Q5TC82 AL807752.3-201ENST00000456356 748 ntTSL 2 BASIC21.66■■□□□ 1.06
RC3H1Q5TC82 AL512638.1-201ENST00000457493 794 ntBASIC21.66■■□□□ 1.06
RC3H1Q5TC82 AP005018.1-201ENST00000525475 301 ntBASIC21.66■■□□□ 1.06
RC3H1Q5TC82 NR2C2AP-204ENST00000538165 891 ntTSL 2 BASIC21.66■■□□□ 1.06
RC3H1Q5TC82 AP000842.3-202ENST00000569238 1080 ntBASIC21.66■■□□□ 1.06
RC3H1Q5TC82 ENTPD2-202ENST00000355097 2095 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
RC3H1Q5TC82 HOXA-AS3-205ENST00000524304 2063 ntTSL 2 BASIC21.66■■□□□ 1.06
RC3H1Q5TC82 CACTIN-202ENST00000248420 2671 ntAPPRIS P1 TSL 5 BASIC21.66■■□□□ 1.06
RC3H1Q5TC82 RPN2-201ENST00000237530 2515 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
RC3H1Q5TC82 TRAF3-203ENST00000392745 2459 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
RC3H1Q5TC82 LMNA-202ENST00000361308 1713 ntTSL 5 BASIC21.66■■□□□ 1.06
RC3H1Q5TC82 CCDC28A-202ENST00000611852 1505 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
RC3H1Q5TC82 P2RY2-201ENST00000311131 2660 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
RC3H1Q5TC82 AL353732.1-201ENST00000569618 1459 ntBASIC21.65■■□□□ 1.06
RC3H1Q5TC82 MDM2-209ENST00000393412 1404 ntTSL 5 BASIC21.65■■□□□ 1.06
RC3H1Q5TC82 MATN3-202ENST00000421259 1443 ntAPPRIS ALT2 TSL 1 (best) BASIC21.65■■□□□ 1.06
RC3H1Q5TC82 FAM153A-203ENST00000440605 1966 ntAPPRIS P2 TSL 1 (best) BASIC21.65■■□□□ 1.06
RC3H1Q5TC82 PLA2G4C-222ENST00000599921 1984 ntAPPRIS P3 TSL 1 (best) BASIC21.65■■□□□ 1.06
RC3H1Q5TC82 CLEC17A-202ENST00000417570 1399 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
RC3H1Q5TC82 FOLH1-204ENST00000356696 2403 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
RC3H1Q5TC82 MSLN-207ENST00000566549 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC21.65■■□□□ 1.06
RC3H1Q5TC82 CECR2-202ENST00000342247 6178 ntAPPRIS ALT2 TSL 5 BASIC21.65■■□□□ 1.06
RC3H1Q5TC82 AC124057.1-201ENST00000433035 404 ntTSL 5 BASIC21.65■■□□□ 1.06
RC3H1Q5TC82 CRB3P1-201ENST00000449338 276 ntBASIC21.65■■□□□ 1.06
RC3H1Q5TC82 AC008750.1-201ENST00000532473 492 ntTSL 3 BASIC21.65■■□□□ 1.06
RC3H1Q5TC82 PTHLH-207ENST00000539239 890 ntAPPRIS ALT1 TSL 5 BASIC21.65■■□□□ 1.06
RC3H1Q5TC82 MYBPH-202ENST00000621380 1772 ntTSL 5 BASIC21.65■■□□□ 1.06
RC3H1Q5TC82 PYCR2-201ENST00000343818 1689 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
RC3H1Q5TC82 C9orf64-203ENST00000376344 2443 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
RC3H1Q5TC82 TXNRD3-202ENST00000523403 2351 ntAPPRIS ALT2 TSL 2 BASIC21.65■■□□□ 1.06
RC3H1Q5TC82 PIGV-201ENST00000078527 2367 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
RC3H1Q5TC82 UBE3D-203ENST00000369747 1917 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
RC3H1Q5TC82 NOP9-202ENST00000396802 1942 ntTSL 5 BASIC21.65■■□□□ 1.06
RC3H1Q5TC82 CIZ1-226ENST00000629610 2855 ntAPPRIS ALT2 TSL 2 BASIC21.64■■□□□ 1.06
RC3H1Q5TC82 SARDH-202ENST00000371867 1326 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
RC3H1Q5TC82 SMOC1-201ENST00000361956 2040 ntAPPRIS ALT1 TSL 1 (best) BASIC21.64■■□□□ 1.05
RC3H1Q5TC82 TMEM270-201ENST00000320531 854 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
RC3H1Q5TC82 RESP18-201ENST00000333527 795 ntAPPRIS P2 TSL 1 (best) BASIC21.64■■□□□ 1.05
RC3H1Q5TC82 CACNB2-206ENST00000377328 1233 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
RC3H1Q5TC82 VCX-202ENST00000381059 967 ntAPPRIS P2 TSL 1 (best) BASIC21.64■■□□□ 1.05
RC3H1Q5TC82 FAM159B-201ENST00000389074 847 ntAPPRIS P1 TSL 2 BASIC21.64■■□□□ 1.05
RC3H1Q5TC82 GOLGA6L11P-201ENST00000417252 1298 ntBASIC21.64■■□□□ 1.05
RC3H1Q5TC82 AC073283.1-201ENST00000421759 860 ntTSL 3 BASIC21.64■■□□□ 1.05
RC3H1Q5TC82 CR383656.12-201ENST00000549567 513 ntBASIC21.64■■□□□ 1.05
RC3H1Q5TC82 AC013565.3-202ENST00000570120 460 ntTSL 2 BASIC21.64■■□□□ 1.05
RC3H1Q5TC82 AC005391.1-201ENST00000613285 341 ntTSL 3 BASIC21.64■■□□□ 1.05
RC3H1Q5TC82 IER3IP1-202ENST00000639845 832 ntTSL 2 BASIC21.64■■□□□ 1.05
RC3H1Q5TC82 AC104581.1-203ENST00000640240 353 ntTSL 2 BASIC21.64■■□□□ 1.05
RC3H1Q5TC82 SERPINB6-201ENST00000335686 1604 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
RC3H1Q5TC82 ZNF133-210ENST00000535822 2341 ntTSL 3 BASIC21.64■■□□□ 1.05
RC3H1Q5TC82 EEF1D-205ENST00000442189 2207 ntAPPRIS P4 TSL 1 (best) BASIC21.64■■□□□ 1.05
RC3H1Q5TC82 BIN1-208ENST00000376113 1832 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
RC3H1Q5TC82 GABRB1-201ENST00000295454 2143 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
RC3H1Q5TC82 YAP1-210ENST00000615667 5398 ntAPPRIS ALT2 TSL 5 BASIC21.64■■□□□ 1.05
RC3H1Q5TC82 NAPA-AS1-201ENST00000593284 1753 ntTSL 2 BASIC21.64■■□□□ 1.05
RC3H1Q5TC82 ITPKC-201ENST00000263370 3385 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
RC3H1Q5TC82 TWF1-201ENST00000395510 3045 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
RC3H1Q5TC82 ARRB2-203ENST00000381488 1236 ntTSL 2 BASIC21.63■■□□□ 1.05
RC3H1Q5TC82 COLEC11-205ENST00000402922 1134 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
RC3H1Q5TC82 HCG4-201ENST00000418983 998 ntBASIC21.63■■□□□ 1.05
RC3H1Q5TC82 IL32-206ENST00000440815 920 ntAPPRIS P4 TSL 2 BASIC21.63■■□□□ 1.05
RC3H1Q5TC82 IL32-207ENST00000444393 892 ntAPPRIS P4 TSL 2 BASIC21.63■■□□□ 1.05
RC3H1Q5TC82 PRKAG2-AS1-202ENST00000467458 1064 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
RC3H1Q5TC82 AC004890.2-204ENST00000481968 304 ntBASIC21.63■■□□□ 1.05
RC3H1Q5TC82 IL32-219ENST00000531965 746 ntAPPRIS ALT2 TSL 1 (best) BASIC21.63■■□□□ 1.05
RC3H1Q5TC82 IL32-226ENST00000548476 1014 ntAPPRIS ALT2 TSL 2 BASIC21.63■■□□□ 1.05
RC3H1Q5TC82 MIR3909-201ENST00000579518 119 ntBASIC21.63■■□□□ 1.05
RC3H1Q5TC82 CECR7-204ENST00000609932 568 ntTSL 2 BASIC21.63■■□□□ 1.05
RC3H1Q5TC82 MIR6080-201ENST00000617359 66 ntBASIC21.63■■□□□ 1.05
RC3H1Q5TC82 AC247036.6-201ENST00000632950 410 ntAPPRIS P1 BASIC21.63■■□□□ 1.05
RC3H1Q5TC82 AC020934.3-201ENST00000639810 348 ntAPPRIS P1 TSL 3 BASIC21.63■■□□□ 1.05
RC3H1Q5TC82 ABCB9-202ENST00000344275 2394 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
RC3H1Q5TC82 RRP7BP-201ENST00000357802 2375 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
RC3H1Q5TC82 ZNF281-202ENST00000367352 2933 ntAPPRIS ALT2 TSL 2 BASIC21.63■■□□□ 1.05
Retrieved 100 of 98,524 protein–RNA pairs in 23.9 ms