Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 CD19-202ENST00000538922 1957 ntAPPRIS ALT2 TSL 5 BASIC17.67■□□□□ 0.42
USP39Q53GS9 GPS1-201ENST00000306823 1842 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
USP39Q53GS9 AC090206.1-201ENST00000615734 1678 ntTSL 5 BASIC17.67■□□□□ 0.42
USP39Q53GS9 CRMP1-202ENST00000397890 2911 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
USP39Q53GS9 LRRN4CL-201ENST00000317449 2585 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
USP39Q53GS9 AP005717.1-201ENST00000500705 1899 ntTSL 5 BASIC17.67■□□□□ 0.42
USP39Q53GS9 WIPI2-211ENST00000484262 1504 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
USP39Q53GS9 NLE1-201ENST00000360831 1726 ntTSL 5 BASIC17.67■□□□□ 0.42
USP39Q53GS9 AZU1-202ENST00000592205 1713 ntTSL 2 BASIC17.67■□□□□ 0.42
USP39Q53GS9 ADAD1-203ENST00000388725 1918 ntTSL 2 BASIC17.66■□□□□ 0.42
USP39Q53GS9 TPD52L1-202ENST00000368388 2147 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
USP39Q53GS9 AC254629.1-202ENST00000618276 2112 ntTSL 2 BASIC17.66■□□□□ 0.42
USP39Q53GS9 AC138969.1-205ENST00000381497 1552 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
USP39Q53GS9 PIGV-201ENST00000078527 2367 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
USP39Q53GS9 PRICKLE4-204ENST00000458694 1646 ntAPPRIS P2 TSL 5 BASIC17.66■□□□□ 0.42
USP39Q53GS9 AC138028.4-201ENST00000564984 1845 ntBASIC17.66■□□□□ 0.42
USP39Q53GS9 UBFD1-201ENST00000395878 5110 ntAPPRIS P2 TSL 2 BASIC17.66■□□□□ 0.42
USP39Q53GS9 SLC22A4-201ENST00000200652 2201 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
USP39Q53GS9 AL162231.1-204ENST00000423809 477 ntAPPRIS ALT2 TSL 3 BASIC17.66■□□□□ 0.42
USP39Q53GS9 PON3-203ENST00000427422 894 ntTSL 3 BASIC17.66■□□□□ 0.42
USP39Q53GS9 SPATA33-208ENST00000568929 1264 ntAPPRIS ALT2 TSL 2 BASIC17.66■□□□□ 0.42
USP39Q53GS9 AC008761.1-201ENST00000595363 217 ntTSL 5 BASIC17.66■□□□□ 0.42
USP39Q53GS9 MEST-201ENST00000223215 2465 ntAPPRIS P4 TSL 1 (best) BASIC17.66■□□□□ 0.42
USP39Q53GS9 NPBWR1-201ENST00000331251 2687 ntAPPRIS P1 BASIC17.66■□□□□ 0.42
USP39Q53GS9 APBB1-215ENST00000608394 2128 ntTSL 5 BASIC17.66■□□□□ 0.42
USP39Q53GS9 APBB1-222ENST00000610474 2147 ntTSL 5 BASIC17.66■□□□□ 0.42
USP39Q53GS9 FAM50B-202ENST00000380274 1932 ntAPPRIS P1 BASIC17.66■□□□□ 0.42
USP39Q53GS9 RPL32-202ENST00000396953 1734 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
USP39Q53GS9 TRIM24-201ENST00000343526 8410 ntAPPRIS P3 TSL 1 (best) BASIC17.66■□□□□ 0.42
USP39Q53GS9 GMPPA-204ENST00000373908 1501 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
USP39Q53GS9 PEX13-204ENST00000444100 1533 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
USP39Q53GS9 MPV17L-201ENST00000287594 5820 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
USP39Q53GS9 DAG1-201ENST00000308775 5522 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
USP39Q53GS9 LINC00271-201ENST00000421378 1580 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
USP39Q53GS9 PRSS35-201ENST00000369700 2440 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
USP39Q53GS9 KRT85-202ENST00000544265 1387 ntTSL 2 BASIC17.66■□□□□ 0.42
USP39Q53GS9 ADGRB2-201ENST00000373655 5400 ntAPPRIS P4 TSL 1 (best) BASIC17.65■□□□□ 0.42
USP39Q53GS9 EIF4ENIF1-202ENST00000344710 3115 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
USP39Q53GS9 ST6GALNAC6-201ENST00000291839 2280 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
USP39Q53GS9 SPAST-202ENST00000345662 5116 ntAPPRIS ALT1 TSL 1 (best) BASIC17.65■□□□□ 0.42
USP39Q53GS9 BAIAP2L2-201ENST00000332536 2065 ntAPPRIS ALT2 TSL 5 BASIC17.65■□□□□ 0.42
USP39Q53GS9 SMPD3-211ENST00000568373 2073 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
USP39Q53GS9 NCF1C-201ENST00000438382 1427 ntBASIC17.65■□□□□ 0.42
USP39Q53GS9 CACNB3-202ENST00000536187 1872 ntTSL 2 BASIC17.65■□□□□ 0.42
USP39Q53GS9 CTSB-202ENST00000353047 3875 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
USP39Q53GS9 CSK-201ENST00000220003 2767 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
USP39Q53GS9 KLHL33-202ENST00000636854 2394 ntAPPRIS P1 TSL 5 BASIC17.65■□□□□ 0.42
USP39Q53GS9 STK11-201ENST00000326873 2611 ntAPPRIS P2 TSL 1 (best) BASIC17.65■□□□□ 0.42
USP39Q53GS9 LPAR3-201ENST00000370611 1720 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
USP39Q53GS9 H2AFZ-201ENST00000296417 979 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
USP39Q53GS9 FIGLA-201ENST00000332372 722 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
USP39Q53GS9 CRADD-201ENST00000332896 1169 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
USP39Q53GS9 IGKV4-1-201ENST00000390243 538 ntAPPRIS P1 BASIC17.65■□□□□ 0.42
USP39Q53GS9 CENPM-203ENST00000402338 1002 ntTSL 2 BASIC17.65■□□□□ 0.42
USP39Q53GS9 RFXANK-203ENST00000407360 1212 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
USP39Q53GS9 TSTD1-204ENST00000423014 593 ntAPPRIS ALT2 TSL 2 BASIC17.65■□□□□ 0.42
USP39Q53GS9 AFG3L1P-209ENST00000429663 458 ntTSL 3 BASIC17.65■□□□□ 0.42
USP39Q53GS9 HTR5BP-201ENST00000430851 1154 ntBASIC17.65■□□□□ 0.42
USP39Q53GS9 PRSS29P-201ENST00000440800 595 ntBASIC17.65■□□□□ 0.42
USP39Q53GS9 HOXC-AS3-202ENST00000513165 533 ntTSL 3 BASIC17.65■□□□□ 0.42
USP39Q53GS9 HOXD8-204ENST00000544999 1235 ntAPPRIS ALT2 TSL 5 BASIC17.65■□□□□ 0.42
USP39Q53GS9 SHISA3-201ENST00000319234 1971 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
USP39Q53GS9 FIGNL2-202ENST00000618634 4812 ntAPPRIS P1 TSL 5 BASIC17.65■□□□□ 0.42
USP39Q53GS9 TRAF3-203ENST00000392745 2459 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
USP39Q53GS9 CHEK2-202ENST00000348295 1771 ntTSL 5 BASIC17.65■□□□□ 0.42
USP39Q53GS9 EIPR1-201ENST00000382125 1766 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
USP39Q53GS9 AC006504.4-201ENST00000592118 1568 ntBASIC17.65■□□□□ 0.42
USP39Q53GS9 FERMT2-204ENST00000399304 2082 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
USP39Q53GS9 IL17RC-206ENST00000416074 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
USP39Q53GS9 TMEM110-201ENST00000355083 4769 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
USP39Q53GS9 CCDC78-201ENST00000293889 1611 ntAPPRIS P2 TSL 1 (best) BASIC17.65■□□□□ 0.42
USP39Q53GS9 SMPD4-202ENST00000409031 4896 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
USP39Q53GS9 RUVBL1-202ENST00000464873 2126 ntTSL 2 BASIC17.65■□□□□ 0.42
USP39Q53GS9 REXO1L9P-201ENST00000604264 2108 ntBASIC17.65■□□□□ 0.42
USP39Q53GS9 RNFT2-204ENST00000407967 2415 ntTSL 5 BASIC17.64■□□□□ 0.42
USP39Q53GS9 PCBP3-205ENST00000400310 2168 ntTSL 2 BASIC17.64■□□□□ 0.42
USP39Q53GS9 PNLDC1-207ENST00000610273 1940 ntTSL 1 (best) BASIC17.64■□□□□ 0.42
USP39Q53GS9 STIM2-212ENST00000639640 2241 ntAPPRIS P3 TSL 1 (best) BASIC17.64■□□□□ 0.42
USP39Q53GS9 FCER2-202ENST00000360067 1482 ntAPPRIS ALT2 TSL 5 BASIC17.64■□□□□ 0.41
USP39Q53GS9 OGFOD2-224ENST00000545612 1465 ntTSL 2 BASIC17.64■□□□□ 0.41
USP39Q53GS9 ZDHHC8P1-204ENST00000433168 2309 ntTSL 2 BASIC17.64■□□□□ 0.41
USP39Q53GS9 ALG3-201ENST00000397676 1528 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
USP39Q53GS9 GPD2-201ENST00000310454 6041 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
USP39Q53GS9 ZNF131-206ENST00000505606 3209 ntAPPRIS P1 TSL 5 BASIC17.64■□□□□ 0.41
USP39Q53GS9 BOD1L2-201ENST00000585477 3239 ntAPPRIS P1 BASIC17.64■□□□□ 0.41
USP39Q53GS9 TMEM205-201ENST00000354882 1034 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
USP39Q53GS9 ADARB2-201ENST00000381305 703 ntTSL 2 BASIC17.64■□□□□ 0.41
USP39Q53GS9 ELK2BP-201ENST00000415014 1224 ntBASIC17.64■□□□□ 0.41
USP39Q53GS9 MKNK2P1-201ENST00000437526 628 ntBASIC17.64■□□□□ 0.41
USP39Q53GS9 AC108073.2-201ENST00000464002 357 ntBASIC17.64■□□□□ 0.41
USP39Q53GS9 AC091133.2-201ENST00000505903 428 ntTSL 3 BASIC17.64■□□□□ 0.41
USP39Q53GS9 MAL2-202ENST00000531508 892 ntTSL 3 BASIC17.64■□□□□ 0.41
USP39Q53GS9 AC004801.5-202ENST00000546804 530 ntTSL 4 BASIC17.64■□□□□ 0.41
USP39Q53GS9 CD63-210ENST00000550776 870 ntTSL 5 BASIC17.64■□□□□ 0.41
USP39Q53GS9 PYCR1-207ENST00000577756 1144 ntTSL 2 BASIC17.64■□□□□ 0.41
USP39Q53GS9 TMEM205-205ENST00000586590 677 ntAPPRIS P1 TSL 5 BASIC17.64■□□□□ 0.41
USP39Q53GS9 TMEM205-207ENST00000586956 1003 ntAPPRIS P1 TSL 2 BASIC17.64■□□□□ 0.41
USP39Q53GS9 STX10-204ENST00000587230 1136 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
USP39Q53GS9 AL157832.3-201ENST00000635764 1005 ntTSL 5 BASIC17.64■□□□□ 0.41
USP39Q53GS9 AC092865.6-201ENST00000642101 219 ntBASIC17.64■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 26.9 ms