Protein–RNA interactions for Protein: P84243

H3F3A, Histone H3.3, humanhuman

Predictions only

Length 136 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
H3F3AP84243 KLK12-203ENST00000525263 1077 ntAPPRIS ALT2 TSL 1 (best) BASIC15.55■□□□□ 0.08
H3F3AP84243 RAP1B-228ENST00000542145 1060 ntTSL 2 BASIC15.55■□□□□ 0.08
H3F3AP84243 NKAPP1-205ENST00000585790 367 ntBASIC15.55■□□□□ 0.08
H3F3AP84243 IRF5-214ENST00000613821 595 ntTSL 5 BASIC15.55■□□□□ 0.08
H3F3AP84243 AC064853.6-201ENST00000642029 303 ntAPPRIS P1 BASIC15.55■□□□□ 0.08
H3F3AP84243 PGM5-202ENST00000396396 3338 ntAPPRIS P1 TSL 2 BASIC15.55■□□□□ 0.08
H3F3AP84243 LRRC20-203ENST00000358141 2924 ntTSL 2 BASIC15.55■□□□□ 0.08
H3F3AP84243 STRN4-204ENST00000539396 2608 ntTSL 2 BASIC15.55■□□□□ 0.08
H3F3AP84243 CBS-201ENST00000352178 2583 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
H3F3AP84243 CLDN5-202ENST00000406028 2548 ntTSL 2 BASIC15.55■□□□□ 0.08
H3F3AP84243 P2RY6-202ENST00000393590 2398 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
H3F3AP84243 OBSL1-201ENST00000289656 2274 ntTSL 5 BASIC15.55■□□□□ 0.08
H3F3AP84243 TFAP2E-201ENST00000373235 2189 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
H3F3AP84243 GCGR-201ENST00000400723 2051 ntAPPRIS P2 TSL 1 (best) BASIC15.55■□□□□ 0.08
H3F3AP84243 THAP12-201ENST00000260045 3300 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
H3F3AP84243 OGG1-206ENST00000349503 1950 ntTSL 5 BASIC15.55■□□□□ 0.08
H3F3AP84243 SNX16-201ENST00000345957 1853 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
H3F3AP84243 TACC1-202ENST00000317827 7802 ntAPPRIS P3 TSL 1 (best) BASIC15.54■□□□□ 0.08
H3F3AP84243 ETV4-205ENST00000545954 1775 ntTSL 2 BASIC15.54■□□□□ 0.08
H3F3AP84243 LGMN-216ENST00000557434 1797 ntTSL 5 BASIC15.54■□□□□ 0.08
H3F3AP84243 NPRL2-201ENST00000232501 1700 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
H3F3AP84243 LENG8-202ENST00000376514 5146 ntAPPRIS ALT2 TSL 5 BASIC15.54■□□□□ 0.08
H3F3AP84243 AC116353.5-201ENST00000638148 1699 ntBASIC15.54■□□□□ 0.08
H3F3AP84243 RUBCNL-203ENST00000378787 2731 ntTSL 2 BASIC15.54■□□□□ 0.08
H3F3AP84243 PRAMEF20-201ENST00000316412 1597 ntAPPRIS P1 TSL 5 BASIC15.54■□□□□ 0.08
H3F3AP84243 FBLIM1-202ENST00000375766 3695 ntAPPRIS P1 TSL 2 BASIC15.54■□□□□ 0.08
H3F3AP84243 FOXD4L1-201ENST00000306507 2491 ntAPPRIS P1 BASIC15.54■□□□□ 0.08
H3F3AP84243 USH1C-205ENST00000527020 2159 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
H3F3AP84243 SIGLEC8-202ENST00000340550 1293 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
H3F3AP84243 CREM-211ENST00000374726 1207 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
H3F3AP84243 C6orf48-203ENST00000375638 847 ntAPPRIS P1 TSL 2 BASIC15.54■□□□□ 0.08
H3F3AP84243 C6orf48-207ENST00000375642 962 ntAPPRIS P1 TSL 2 BASIC15.54■□□□□ 0.08
H3F3AP84243 RPL13P5-203ENST00000421824 845 ntTSL 3 BASIC15.54■□□□□ 0.08
H3F3AP84243 AC078883.2-201ENST00000441212 558 ntTSL 3 BASIC15.54■□□□□ 0.08
H3F3AP84243 FAAHP1-202ENST00000446499 1238 ntBASIC15.54■□□□□ 0.08
H3F3AP84243 LAT-205ENST00000454369 1262 ntAPPRIS ALT2 TSL 5 BASIC15.54■□□□□ 0.08
H3F3AP84243 SCARNA2-201ENST00000458748 420 ntBASIC15.54■□□□□ 0.08
H3F3AP84243 IRF8-202ENST00000562492 946 ntTSL 3 BASIC15.54■□□□□ 0.08
H3F3AP84243 AC132872.3-201ENST00000620937 629 ntTSL 5 BASIC15.54■□□□□ 0.08
H3F3AP84243 AL691432.3-201ENST00000621860 400 ntBASIC15.54■□□□□ 0.08
H3F3AP84243 AL022326.1-202ENST00000641533 845 ntBASIC15.54■□□□□ 0.08
H3F3AP84243 AL645608.8-201ENST00000606034 2086 ntBASIC15.54■□□□□ 0.08
H3F3AP84243 RAI2-203ENST00000415486 2037 ntTSL 2 BASIC15.54■□□□□ 0.08
H3F3AP84243 GPD2-201ENST00000310454 6041 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
H3F3AP84243 C21orf58-203ENST00000397680 2624 ntAPPRIS ALT2 TSL 2 BASIC15.54■□□□□ 0.08
H3F3AP84243 PTGER3-208ENST00000370932 1841 ntAPPRIS ALT2 TSL 5 BASIC15.54■□□□□ 0.08
H3F3AP84243 HTR1A-201ENST00000323865 1778 ntAPPRIS P1 BASIC15.54■□□□□ 0.08
H3F3AP84243 ANHX-201ENST00000419717 1765 ntAPPRIS P1 TSL 2 BASIC15.54■□□□□ 0.08
H3F3AP84243 SPC24-206ENST00000592540 2315 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
H3F3AP84243 PAX7-201ENST00000375375 2260 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
H3F3AP84243 GHRHR-205ENST00000409904 1613 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
H3F3AP84243 AHSA2-202ENST00000394457 6574 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
H3F3AP84243 ZNF512B-201ENST00000369888 5919 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
H3F3AP84243 CCDC120-204ENST00000597275 2752 ntAPPRIS P3 TSL 2 BASIC15.53■□□□□ 0.08
H3F3AP84243 AC004817.3-201ENST00000602957 2129 ntBASIC15.53■□□□□ 0.08
H3F3AP84243 AP003071.5-201ENST00000641568 2695 ntAPPRIS P1 BASIC15.53■□□□□ 0.08
H3F3AP84243 SCARB2-201ENST00000264896 4792 ntAPPRIS P2 TSL 1 (best) BASIC15.53■□□□□ 0.08
H3F3AP84243 TSPAN7-202ENST00000378482 1909 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
H3F3AP84243 TRAF4-201ENST00000262395 2923 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
H3F3AP84243 SETD3-201ENST00000329331 1330 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
H3F3AP84243 TDRP-201ENST00000324079 3395 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
H3F3AP84243 MRPL28-201ENST00000199706 1098 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
H3F3AP84243 PRSS27-201ENST00000302641 1130 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
H3F3AP84243 ZNHIT1-201ENST00000305105 1225 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
H3F3AP84243 ZNF7-201ENST00000325217 592 ntTSL 4 BASIC15.53■□□□□ 0.08
H3F3AP84243 VMO1-202ENST00000354194 651 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
H3F3AP84243 SPATA22-202ENST00000355380 1216 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
H3F3AP84243 SMIM11A-202ENST00000399295 1074 ntAPPRIS P1 TSL 2 BASIC15.53■□□□□ 0.08
H3F3AP84243 POM121L12-201ENST00000408890 1283 ntAPPRIS P1 BASIC15.53■□□□□ 0.08
H3F3AP84243 AL137026.1-202ENST00000452578 1089 ntTSL 2 BASIC15.53■□□□□ 0.08
H3F3AP84243 AC097372.2-201ENST00000510996 732 ntTSL 3 BASIC15.53■□□□□ 0.08
H3F3AP84243 ARAP1-AS1-201ENST00000542022 388 ntTSL 5 BASIC15.53■□□□□ 0.08
H3F3AP84243 MTUS2-205ENST00000542829 1165 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
H3F3AP84243 SART3-203ENST00000546611 1184 ntBASIC15.53■□□□□ 0.08
H3F3AP84243 TUBA1A-203ENST00000546918 984 ntTSL 3 BASIC15.53■□□□□ 0.08
H3F3AP84243 SAXO2-206ENST00000566205 340 ntAPPRIS ALT2 TSL 2 BASIC15.53■□□□□ 0.08
H3F3AP84243 ATPAF2-213ENST00000585101 566 ntTSL 4 BASIC15.53■□□□□ 0.08
H3F3AP84243 COPE-211ENST00000600932 1144 ntTSL 5 BASIC15.53■□□□□ 0.08
H3F3AP84243 AL590235.2-202ENST00000602543 594 ntTSL 5 BASIC15.53■□□□□ 0.08
H3F3AP84243 AL121912.1-201ENST00000603683 238 ntBASIC15.53■□□□□ 0.08
H3F3AP84243 SMIM11B-207ENST00000624758 1074 ntAPPRIS P1 TSL 2 BASIC15.53■□□□□ 0.08
H3F3AP84243 LINC00905-202ENST00000588117 1768 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
H3F3AP84243 HDAC10-201ENST00000216271 2687 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
H3F3AP84243 TCIRG1-201ENST00000265686 2677 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
H3F3AP84243 PRMT2-203ENST00000355680 2688 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
H3F3AP84243 TNFRSF14-AS1-205ENST00000449660 1629 ntTSL 2 BASIC15.53■□□□□ 0.08
H3F3AP84243 ABCB8-211ENST00000477092 1596 ntTSL 5 BASIC15.53■□□□□ 0.08
H3F3AP84243 HNRNPM-217ENST00000620401 2458 ntAPPRIS ALT2 TSL 1 (best) BASIC15.53■□□□□ 0.08
H3F3AP84243 NRXN1-209ENST00000405581 5078 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
H3F3AP84243 PPP1R18-201ENST00000274853 4599 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
H3F3AP84243 DBNL-213ENST00000452943 1513 ntTSL 2 BASIC15.53■□□□□ 0.08
H3F3AP84243 PPP1R18-205ENST00000615527 4597 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
H3F3AP84243 SIRT1-201ENST00000212015 4094 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
H3F3AP84243 APBB1-224ENST00000621678 1907 ntTSL 5 BASIC15.53■□□□□ 0.08
H3F3AP84243 VASH1-201ENST00000167106 5728 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
H3F3AP84243 CPT2-208ENST00000636891 2746 ntTSL 5 BASIC15.52■□□□□ 0.08
H3F3AP84243 EIF3B-201ENST00000360876 3055 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
H3F3AP84243 HFE2-201ENST00000336751 2234 ntAPPRIS P1 TSL 2 BASIC15.52■□□□□ 0.08
H3F3AP84243 DHX33-202ENST00000433302 2225 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
H3F3AP84243 STK25-201ENST00000316586 4619 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Retrieved 100 of 98,524 protein–RNA pairs in 25.5 ms