Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 OTOL1-201ENST00000327928 1434 ntAPPRIS P1 TSL 2 BASIC23.81■■□□□ 1.4
MSH6P52701 AC074389.1-201ENST00000382528 1423 ntTSL 2 BASIC23.81■■□□□ 1.4
MSH6P52701 FBXL18-205ENST00000620087 2076 ntTSL 5 BASIC23.81■■□□□ 1.4
MSH6P52701 ARHGAP22-203ENST00000374172 2380 ntTSL 2 BASIC23.81■■□□□ 1.4
MSH6P52701 ARMC6-202ENST00000392335 2383 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
MSH6P52701 CLEC17A-202ENST00000417570 1399 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
MSH6P52701 EZH2-201ENST00000320356 2639 ntAPPRIS P4 TSL 1 (best) BASIC23.81■■□□□ 1.4
MSH6P52701 C1orf159-205ENST00000421241 1841 ntAPPRIS P3 TSL 2 BASIC23.81■■□□□ 1.4
MSH6P52701 NCCRP1-201ENST00000339852 1978 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
MSH6P52701 PDXK-219ENST00000621478 1967 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
MSH6P52701 CBSL-210ENST00000624934 1992 ntTSL 5 BASIC23.81■■□□□ 1.4
MSH6P52701 ZNF398-202ENST00000475153 2860 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
MSH6P52701 ARRDC2-201ENST00000222250 2503 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
MSH6P52701 NAT16-201ENST00000300303 2935 ntAPPRIS P2 TSL 2 BASIC23.8■■□□□ 1.4
MSH6P52701 WASH6P-202ENST00000359512 1437 ntBASIC23.8■■□□□ 1.4
MSH6P52701 KLK14-202ENST00000391802 1133 ntAPPRIS P1 TSL 5 BASIC23.8■■□□□ 1.4
MSH6P52701 RPS2P32-201ENST00000439199 892 ntBASIC23.8■■□□□ 1.4
MSH6P52701 TMEM14B-212ENST00000475942 992 ntTSL 2 BASIC23.8■■□□□ 1.4
MSH6P52701 AP001351.1-201ENST00000501397 1865 ntTSL 2 BASIC23.8■■□□□ 1.4
MSH6P52701 HILS1-201ENST00000504307 1219 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
MSH6P52701 AP002748.3-201ENST00000527092 828 ntTSL 3 BASIC23.8■■□□□ 1.4
MSH6P52701 THOP1-205ENST00000586677 1872 ntTSL 2 BASIC23.8■■□□□ 1.4
MSH6P52701 VMAC-201ENST00000339485 2254 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
MSH6P52701 PCID2-203ENST00000375457 2372 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
MSH6P52701 MTERF2-201ENST00000240050 1790 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
MSH6P52701 HERPUD2-201ENST00000311350 2474 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
MSH6P52701 BTNL9-202ENST00000376841 1626 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
MSH6P52701 AC138969.3-201ENST00000546612 1459 ntBASIC23.8■■□□□ 1.4
MSH6P52701 AC138932.2-201ENST00000548268 1459 ntBASIC23.8■■□□□ 1.4
MSH6P52701 AC126755.4-201ENST00000549796 1459 ntBASIC23.8■■□□□ 1.4
MSH6P52701 SLC27A2-202ENST00000380902 2181 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
MSH6P52701 PRRT2-216ENST00000637403 2033 ntTSL 5 BASIC23.8■■□□□ 1.4
MSH6P52701 SARDH-202ENST00000371867 1326 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
MSH6P52701 FAM120A-201ENST00000277165 5118 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
MSH6P52701 TMPRSS5-205ENST00000538955 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC23.8■■□□□ 1.4
MSH6P52701 SLCO4A1-AS1-202ENST00000433126 1420 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
MSH6P52701 TPM2-201ENST00000329305 1018 ntAPPRIS ALT1 TSL 2 BASIC23.79■■□□□ 1.4
MSH6P52701 DUPD1-201ENST00000338487 663 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
MSH6P52701 TCEAL3-203ENST00000372628 1221 ntAPPRIS P1 TSL 5 BASIC23.79■■□□□ 1.4
MSH6P52701 MIR1909-201ENST00000411312 80 ntBASIC23.79■■□□□ 1.4
MSH6P52701 AL034550.1-201ENST00000442179 986 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
MSH6P52701 AC091133.3-201ENST00000504865 432 ntTSL 5 BASIC23.79■■□□□ 1.4
MSH6P52701 LY6E-204ENST00000519546 971 ntTSL 2 BASIC23.79■■□□□ 1.4
MSH6P52701 AC068228.2-201ENST00000522383 777 ntTSL 3 BASIC23.79■■□□□ 1.4
MSH6P52701 AP003385.5-201ENST00000533876 555 ntTSL 4 BASIC23.79■■□□□ 1.4
MSH6P52701 TRPM2-208ENST00000621064 1669 ntTSL 5 BASIC23.79■■□□□ 1.4
MSH6P52701 CSPG5-201ENST00000264723 4080 ntAPPRIS P3 TSL 1 (best) BASIC23.79■■□□□ 1.4
MSH6P52701 TRIM41-202ENST00000351937 2696 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
MSH6P52701 TMEM132A-202ENST00000453848 3346 ntAPPRIS ALT2 TSL 1 (best) BASIC23.79■■□□□ 1.4
MSH6P52701 MARK2-208ENST00000508192 2924 ntAPPRIS P3 TSL 5 BASIC23.79■■□□□ 1.4
MSH6P52701 USP18-201ENST00000215794 2129 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
MSH6P52701 LRRC4B-202ENST00000599957 3019 ntAPPRIS P1 TSL 3 BASIC23.79■■□□□ 1.4
MSH6P52701 ZDHHC4-203ENST00000396707 1461 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
MSH6P52701 ENTPD8-202ENST00000371506 2222 ntAPPRIS P1 TSL 5 BASIC23.79■■□□□ 1.4
MSH6P52701 CDHR5-201ENST00000349570 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC23.79■■□□□ 1.4
MSH6P52701 SLC27A1-204ENST00000598424 2681 ntTSL 2 BASIC23.79■■□□□ 1.4
MSH6P52701 APBB1-224ENST00000621678 1907 ntTSL 5 BASIC23.79■■□□□ 1.4
MSH6P52701 SEMA3B-210ENST00000611067 2292 ntAPPRIS ALT2 TSL 1 (best) BASIC23.79■■□□□ 1.4
MSH6P52701 SNHG18-201ENST00000508179 1799 ntTSL 2 BASIC23.79■■□□□ 1.4
MSH6P52701 CEP55-201ENST00000371485 2638 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
MSH6P52701 LRRC36-201ENST00000329956 2395 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
MSH6P52701 HNRNPA3P1-201ENST00000401429 1139 ntBASIC23.78■■□□□ 1.4
MSH6P52701 AC093151.3-201ENST00000425554 623 ntTSL 2 BASIC23.78■■□□□ 1.4
MSH6P52701 LINC01983-203ENST00000444346 519 ntTSL 2 BASIC23.78■■□□□ 1.4
MSH6P52701 COMT-209ENST00000449653 1035 ntAPPRIS ALT2 TSL 1 (best) BASIC23.78■■□□□ 1.4
MSH6P52701 HNRNPA3P5-201ENST00000455201 833 ntBASIC23.78■■□□□ 1.4
MSH6P52701 PTPRVP-202ENST00000490575 953 ntTSL 5 BASIC23.78■■□□□ 1.4
MSH6P52701 REEP4-207ENST00000523293 913 ntTSL 3 BASIC23.78■■□□□ 1.4
MSH6P52701 AC133550.1-201ENST00000563565 295 ntTSL 3 BASIC23.78■■□□□ 1.4
MSH6P52701 AC079336.1-201ENST00000583156 420 ntTSL 3 BASIC23.78■■□□□ 1.4
MSH6P52701 FAM92A-219ENST00000620645 1014 ntAPPRIS ALT2 TSL 5 BASIC23.78■■□□□ 1.4
MSH6P52701 EIF6-209ENST00000621148 1054 ntAPPRIS P1 TSL 3 BASIC23.78■■□□□ 1.4
MSH6P52701 AC247036.6-201ENST00000632950 410 ntAPPRIS P1 BASIC23.78■■□□□ 1.4
MSH6P52701 NAB2-201ENST00000300131 2711 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
MSH6P52701 AC008969.1-203ENST00000313957 1897 ntTSL 2 BASIC23.78■■□□□ 1.4
MSH6P52701 ACADVL-205ENST00000543245 2227 ntTSL 2 BASIC23.78■■□□□ 1.4
MSH6P52701 REPS2-202ENST00000357277 7953 ntAPPRIS P3 TSL 1 (best) BASIC23.78■■□□□ 1.4
MSH6P52701 UBAC2-203ENST00000403766 1375 ntAPPRIS P1 TSL 2 BASIC23.78■■□□□ 1.4
MSH6P52701 CFAP100-201ENST00000352312 2086 ntAPPRIS P2 TSL 2 BASIC23.78■■□□□ 1.4
MSH6P52701 NPFFR2-201ENST00000308744 1922 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
MSH6P52701 IL25-201ENST00000329715 1315 ntAPPRIS P3 TSL 1 (best) BASIC23.78■■□□□ 1.4
MSH6P52701 RIN1-205ENST00000530056 2122 ntTSL 2 BASIC23.78■■□□□ 1.4
MSH6P52701 ZNF114-206ENST00000600687 1742 ntAPPRIS P1 TSL 5 BASIC23.78■■□□□ 1.4
MSH6P52701 KRT9-201ENST00000246662 2290 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
MSH6P52701 AC008443.3-201ENST00000412295 549 ntTSL 4 BASIC23.78■■□□□ 1.4
MSH6P52701 TTC28-AS1-213ENST00000434221 972 ntTSL 3 BASIC23.78■■□□□ 1.4
MSH6P52701 AC022201.2-201ENST00000445084 287 ntTSL 5 BASIC23.78■■□□□ 1.4
MSH6P52701 ASF1B-202ENST00000474890 765 ntTSL 2 BASIC23.78■■□□□ 1.4
MSH6P52701 AC084125.2-203ENST00000532766 821 ntTSL 3 BASIC23.78■■□□□ 1.4
MSH6P52701 AC140912.1-201ENST00000577171 1054 ntBASIC23.78■■□□□ 1.4
MSH6P52701 AL132655.2-201ENST00000596276 594 ntBASIC23.78■■□□□ 1.4
MSH6P52701 IGHV3-72-202ENST00000621503 303 ntBASIC23.78■■□□□ 1.4
MSH6P52701 PCDHB2-202ENST00000622947 2231 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
MSH6P52701 AL096828.2-201ENST00000567259 1965 ntBASIC23.77■■□□□ 1.4
MSH6P52701 AC135782.1-201ENST00000537498 2154 ntTSL 2 BASIC23.77■■□□□ 1.4
MSH6P52701 RSRP1-201ENST00000243189 1502 ntAPPRIS P2 TSL 1 (best) BASIC23.77■■□□□ 1.4
MSH6P52701 CCDC28A-202ENST00000611852 1505 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
MSH6P52701 LYSMD4-202ENST00000344791 2885 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
MSH6P52701 PRODH-215ENST00000610940 2405 ntAPPRIS P3 TSL 1 (best) BASIC23.77■■□□□ 1.4
MSH6P52701 MIR346-201ENST00000362234 95 ntBASIC23.77■■□□□ 1.4
Retrieved 100 of 98,524 protein–RNA pairs in 47.9 ms