Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 AC104581.1-203ENST00000640240 353 ntTSL 2 BASIC20.86■□□□□ 0.93
BRCA1P38398 ATP1B1-202ENST00000367816 2608 ntAPPRIS P1 TSL 5 BASIC20.86■□□□□ 0.93
BRCA1P38398 DIABLO-203ENST00000353548 1345 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
BRCA1P38398 AOC3-207ENST00000617500 2392 ntTSL 4 BASIC20.86■□□□□ 0.93
BRCA1P38398 ALDH5A1-201ENST00000348925 2266 ntAPPRIS P4 TSL 1 (best) BASIC20.86■□□□□ 0.93
BRCA1P38398 UBE3D-203ENST00000369747 1917 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
BRCA1P38398 AP000997.3-201ENST00000623333 2250 ntBASIC20.86■□□□□ 0.93
BRCA1P38398 IGFALS-202ENST00000415638 2136 ntTSL 2 BASIC20.86■□□□□ 0.93
BRCA1P38398 TMEM106C-203ENST00000449758 1414 ntTSL 2 BASIC20.86■□□□□ 0.93
BRCA1P38398 AQP11-201ENST00000313578 2152 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
BRCA1P38398 LCN15-201ENST00000316144 762 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
BRCA1P38398 IDH3B-202ENST00000380851 1230 ntAPPRIS ALT1 TSL 1 (best) BASIC20.86■□□□□ 0.93
BRCA1P38398 KRTAP10-1-201ENST00000400375 1215 ntAPPRIS P1 BASIC20.86■□□□□ 0.93
BRCA1P38398 TMEM14DP-201ENST00000422205 345 ntBASIC20.86■□□□□ 0.93
BRCA1P38398 ZNF890P-202ENST00000530367 1156 ntBASIC20.86■□□□□ 0.93
BRCA1P38398 RAB34-223ENST00000636154 730 ntTSL 2 BASIC20.86■□□□□ 0.93
BRCA1P38398 PRF1-203ENST00000638674 1080 ntTSL 5 BASIC20.86■□□□□ 0.93
BRCA1P38398 NETO1-207ENST00000583169 2357 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
BRCA1P38398 UBR2-203ENST00000372903 2423 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
BRCA1P38398 JMJD6-205ENST00000585429 1330 ntTSL 5 BASIC20.85■□□□□ 0.93
BRCA1P38398 USP21-203ENST00000368002 2342 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
BRCA1P38398 FOXP1-214ENST00000493089 2703 ntAPPRIS ALT1 TSL 2 BASIC20.85■□□□□ 0.93
BRCA1P38398 AL391825.1-201ENST00000457671 1364 ntBASIC20.85■□□□□ 0.93
BRCA1P38398 TBL1Y-203ENST00000383032 2407 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
BRCA1P38398 RAB7A-201ENST00000265062 2244 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
BRCA1P38398 ECE2-201ENST00000324557 1823 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
BRCA1P38398 SNHG17-203ENST00000417578 880 ntTSL 2 BASIC20.85■□□□□ 0.93
BRCA1P38398 C8orf46-205ENST00000480005 865 ntTSL 2 BASIC20.85■□□□□ 0.93
BRCA1P38398 AC026471.2-201ENST00000569782 655 ntTSL 2 BASIC20.85■□□□□ 0.93
BRCA1P38398 NAA38-206ENST00000576384 424 ntTSL 2 BASIC20.85■□□□□ 0.93
BRCA1P38398 LRRC27-214ENST00000625755 1738 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
BRCA1P38398 FBXO25-203ENST00000352684 2360 ntTSL 5 BASIC20.85■□□□□ 0.93
BRCA1P38398 FOXI1-201ENST00000306268 1990 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
BRCA1P38398 RAD51C-215ENST00000583539 1319 ntAPPRIS ALT2 TSL 2 BASIC20.85■□□□□ 0.93
BRCA1P38398 NR1H3-202ENST00000405576 1352 ntTSL 5 BASIC20.85■□□□□ 0.93
BRCA1P38398 TMEM147-AS1-203ENST00000589137 1627 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
BRCA1P38398 FOXP1-210ENST00000484350 1996 ntTSL 2 BASIC20.84■□□□□ 0.93
BRCA1P38398 PAFAH1B2-202ENST00000419197 2517 ntTSL 2 BASIC20.84■□□□□ 0.93
BRCA1P38398 NFATC4-228ENST00000556759 2025 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
BRCA1P38398 DDTL-201ENST00000215770 1545 ntAPPRIS P1 TSL 2 BASIC20.84■□□□□ 0.93
BRCA1P38398 F10-202ENST00000375559 1517 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
BRCA1P38398 ACTA1-201ENST00000366683 1122 ntTSL 5 BASIC20.84■□□□□ 0.93
BRCA1P38398 RCAN3-204ENST00000425530 997 ntTSL 5 BASIC20.84■□□□□ 0.93
BRCA1P38398 DLX2-AS1-201ENST00000448117 950 ntTSL 5 BASIC20.84■□□□□ 0.93
BRCA1P38398 AP001471.1-201ENST00000454245 672 ntTSL 3 BASIC20.84■□□□□ 0.93
BRCA1P38398 AC009902.2-201ENST00000518880 620 ntTSL 4 BASIC20.84■□□□□ 0.93
BRCA1P38398 CLNS1A-210ENST00000528364 953 ntAPPRIS P1 TSL 3 BASIC20.84■□□□□ 0.93
BRCA1P38398 DRAP1-208ENST00000532933 751 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
BRCA1P38398 AC009407.1-201ENST00000568958 598 ntBASIC20.84■□□□□ 0.93
BRCA1P38398 AC129507.3-201ENST00000571512 913 ntTSL 2 BASIC20.84■□□□□ 0.93
BRCA1P38398 AC018529.1-201ENST00000613063 361 ntBASIC20.84■□□□□ 0.93
BRCA1P38398 SPTSSB-204ENST00000617024 1292 ntBASIC20.84■□□□□ 0.93
BRCA1P38398 ZDHHC5-204ENST00000527985 2817 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
BRCA1P38398 TRIM17-204ENST00000366698 1748 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
BRCA1P38398 HABP4-201ENST00000375249 2615 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
BRCA1P38398 SLC27A3-204ENST00000368661 2410 ntAPPRIS P2 TSL 1 (best) BASIC20.84■□□□□ 0.93
BRCA1P38398 SLC27A3-214ENST00000624995 2413 ntAPPRIS P2 TSL 1 (best) BASIC20.84■□□□□ 0.93
BRCA1P38398 CAMKK2-207ENST00000404169 2116 ntAPPRIS P4 TSL 1 (best) BASIC20.84■□□□□ 0.93
BRCA1P38398 SEPT8-205ENST00000378701 1817 ntTSL 2 BASIC20.84■□□□□ 0.93
BRCA1P38398 GGT2-202ENST00000405188 1845 ntTSL 5 BASIC20.84■□□□□ 0.93
BRCA1P38398 LINC01657-201ENST00000457217 1809 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
BRCA1P38398 AL450998.2-201ENST00000418525 639 ntTSL 3 BASIC20.84■□□□□ 0.93
BRCA1P38398 AL121753.1-201ENST00000444717 529 ntAPPRIS P1 TSL 3 BASIC20.84■□□□□ 0.93
BRCA1P38398 AL359815.1-201ENST00000457706 821 ntTSL 2 BASIC20.84■□□□□ 0.93
BRCA1P38398 AC073389.1-201ENST00000595595 795 ntBASIC20.84■□□□□ 0.93
BRCA1P38398 AL162274.1-201ENST00000617191 1098 ntBASIC20.84■□□□□ 0.93
BRCA1P38398 AC007431.3-201ENST00000623221 587 ntBASIC20.84■□□□□ 0.93
BRCA1P38398 AC244517.11-204ENST00000624424 760 ntTSL 5 BASIC20.84■□□□□ 0.93
BRCA1P38398 SFT2D2-204ENST00000630869 1073 ntTSL 4 BASIC20.84■□□□□ 0.93
BRCA1P38398 IL10RB-201ENST00000290200 1963 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
BRCA1P38398 BCL2L12-203ENST00000441864 1371 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.93
BRCA1P38398 THAP3-201ENST00000054650 1366 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.93
BRCA1P38398 PLTP-202ENST00000372420 1530 ntTSL 2 BASIC20.83■□□□□ 0.93
BRCA1P38398 CROCCP3-202ENST00000420820 1947 ntBASIC20.83■□□□□ 0.93
BRCA1P38398 RGN-204ENST00000457380 2041 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
BRCA1P38398 MIR658-201ENST00000385210 100 ntBASIC20.83■□□□□ 0.92
BRCA1P38398 AL133456.1-201ENST00000415655 577 ntTSL 4 BASIC20.83■□□□□ 0.92
BRCA1P38398 ZNF589-204ENST00000440261 917 ntTSL 2 BASIC20.83■□□□□ 0.92
BRCA1P38398 IQCF3-202ENST00000440739 505 ntAPPRIS P1 TSL 2 BASIC20.83■□□□□ 0.92
BRCA1P38398 MUSTN1-201ENST00000446157 721 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
BRCA1P38398 NECAP2-203ENST00000457722 935 ntTSL 2 BASIC20.83■□□□□ 0.92
BRCA1P38398 HLA-V-204ENST00000476601 1289 ntBASIC20.83■□□□□ 0.92
BRCA1P38398 AC021054.1-202ENST00000543884 599 ntTSL 3 BASIC20.83■□□□□ 0.92
BRCA1P38398 H2BFM-203ENST00000598335 465 ntAPPRIS P1 TSL 5 BASIC20.83■□□□□ 0.92
BRCA1P38398 ISYNA1-202ENST00000457269 1703 ntTSL 2 BASIC20.83■□□□□ 0.92
BRCA1P38398 SRP68-201ENST00000307877 2649 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
BRCA1P38398 USP3-AS1-201ENST00000558831 1784 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
BRCA1P38398 PRKCSH-209ENST00000589838 1898 ntAPPRIS P3 TSL 1 (best) BASIC20.83■□□□□ 0.92
BRCA1P38398 ZNF324B-202ENST00000545523 2368 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
BRCA1P38398 COL9A3-201ENST00000343916 2485 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
BRCA1P38398 TRAM1L1-201ENST00000310754 2023 ntAPPRIS P1 BASIC20.83■□□□□ 0.92
BRCA1P38398 PSMB11-201ENST00000408907 2110 ntAPPRIS P1 BASIC20.82■□□□□ 0.92
BRCA1P38398 HYAL3-202ENST00000359051 1635 ntTSL 5 BASIC20.82■□□□□ 0.92
BRCA1P38398 GAS2L1P2-202ENST00000442849 2262 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
BRCA1P38398 AC116562.4-201ENST00000641316 2276 ntBASIC20.82■□□□□ 0.92
BRCA1P38398 KLC2-204ENST00000394067 2898 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
BRCA1P38398 ADM5-201ENST00000420022 1718 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
BRCA1P38398 SCAND1-201ENST00000305978 902 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
BRCA1P38398 UBE2G2-201ENST00000330942 721 ntTSL 3 BASIC20.82■□□□□ 0.92
BRCA1P38398 FAM86MP-201ENST00000340703 885 ntBASIC20.82■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 54.1 ms