Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 SH2B3-202ENST00000538307 2062 ntTSL 2 BASIC17.5■□□□□ 0.39
PTPN4P29074 ZNF707-223ENST00000532205 2865 ntAPPRIS P1 TSL 2 BASIC17.5■□□□□ 0.39
PTPN4P29074 DGKZ-201ENST00000318201 3213 ntTSL 2 BASIC17.5■□□□□ 0.39
PTPN4P29074 AL596257.1-201ENST00000641463 2694 ntBASIC17.5■□□□□ 0.39
PTPN4P29074 IFRD1-202ENST00000403825 2290 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
PTPN4P29074 CENPT-215ENST00000564817 1638 ntAPPRIS ALT2 TSL 5 BASIC17.5■□□□□ 0.39
PTPN4P29074 PHRF1-202ENST00000413872 5224 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
PTPN4P29074 PRMT6-201ENST00000370078 2616 ntAPPRIS P1 BASIC17.5■□□□□ 0.39
PTPN4P29074 TOX2-205ENST00000423191 1709 ntTSL 2 BASIC17.5■□□□□ 0.39
PTPN4P29074 CD19-206ENST00000567541 1707 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
PTPN4P29074 GBA2-203ENST00000378103 3611 ntAPPRIS P3 TSL 1 (best) BASIC17.49■□□□□ 0.39
PTPN4P29074 ZSCAN10-201ENST00000252463 2463 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
PTPN4P29074 EFCAB14-201ENST00000371933 5767 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
PTPN4P29074 LIMS2-208ENST00000410011 2335 ntAPPRIS ALT1 TSL 1 (best) BASIC17.49■□□□□ 0.39
PTPN4P29074 SNTB1-201ENST00000395601 5164 ntAPPRIS P1 TSL 5 BASIC17.49■□□□□ 0.39
PTPN4P29074 PRELID3A-203ENST00000587735 1694 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
PTPN4P29074 HOXB1-202ENST00000577092 1414 ntBASIC17.49■□□□□ 0.39
PTPN4P29074 SMO-201ENST00000249373 3738 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
PTPN4P29074 RABAC1-201ENST00000222008 821 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
PTPN4P29074 AURKAIP1-202ENST00000338338 1047 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
PTPN4P29074 HIST1H2AI-201ENST00000358739 503 ntAPPRIS P1 BASIC17.49■□□□□ 0.39
PTPN4P29074 RPUSD3-201ENST00000383820 1225 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
PTPN4P29074 HDAC11-204ENST00000404040 967 ntTSL 3 BASIC17.49■□□□□ 0.39
PTPN4P29074 GGT1-208ENST00000404920 657 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
PTPN4P29074 GGTLC2-203ENST00000480559 657 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
PTPN4P29074 MFGE8-203ENST00000542878 1172 ntTSL 2 BASIC17.49■□□□□ 0.39
PTPN4P29074 C14orf144-201ENST00000553757 537 ntTSL 4 BASIC17.49■□□□□ 0.39
PTPN4P29074 AC104390.1-201ENST00000555663 520 ntBASIC17.49■□□□□ 0.39
PTPN4P29074 AC124016.1-202ENST00000609575 619 ntTSL 2 BASIC17.49■□□□□ 0.39
PTPN4P29074 WDR6-223ENST00000627177 207 ntTSL 2 BASIC17.49■□□□□ 0.39
PTPN4P29074 TMEM65-201ENST00000297632 9029 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
PTPN4P29074 ZNF703-201ENST00000331569 3349 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
PTPN4P29074 AC011473.4-202ENST00000250366 1602 ntAPPRIS P5 TSL 2 BASIC17.49■□□□□ 0.39
PTPN4P29074 NKAIN1-201ENST00000373736 2589 ntAPPRIS P1 TSL 2 BASIC17.49■□□□□ 0.39
PTPN4P29074 MYEF2-215ENST00000610570 2591 ntTSL 5 BASIC17.49■□□□□ 0.39
PTPN4P29074 ANXA8-202ENST00000583448 1971 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
PTPN4P29074 FMNL1-201ENST00000328118 2330 ntTSL 2 BASIC17.49■□□□□ 0.39
PTPN4P29074 TMTC2-201ENST00000321196 5681 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
PTPN4P29074 HAGH-202ENST00000397356 2984 ntAPPRIS P3 TSL 1 (best) BASIC17.49■□□□□ 0.39
PTPN4P29074 HMCN2-204ENST00000611173 1920 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
PTPN4P29074 RAPGEFL1-212ENST00000620260 3855 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
PTPN4P29074 FKBP3-201ENST00000216330 1684 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
PTPN4P29074 CDK4-202ENST00000312990 1650 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
PTPN4P29074 SMARCD3-202ENST00000356800 1669 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
PTPN4P29074 SOCS2-AS1-202ENST00000500986 1655 ntTSL 2 BASIC17.48■□□□□ 0.39
PTPN4P29074 FAM129B-201ENST00000373312 3957 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
PTPN4P29074 AMACR-205ENST00000426255 1316 ntTSL 2 BASIC17.48■□□□□ 0.39
PTPN4P29074 SEMA3B-202ENST00000418576 1765 ntTSL 2 BASIC17.48■□□□□ 0.39
PTPN4P29074 CA12-203ENST00000422263 2556 ntTSL 2 BASIC17.48■□□□□ 0.39
PTPN4P29074 MAP4K3-202ENST00000341681 4271 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
PTPN4P29074 LAT-204ENST00000395461 1448 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
PTPN4P29074 VIPR1-217ENST00000543411 2681 ntTSL 2 BASIC17.48■□□□□ 0.39
PTPN4P29074 MGEA5-202ENST00000361464 5155 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
PTPN4P29074 MAPT-205ENST00000351559 5811 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
PTPN4P29074 MRAS-204ENST00000464896 1534 ntTSL 2 BASIC17.48■□□□□ 0.39
PTPN4P29074 ETV7-202ENST00000340181 1719 ntAPPRIS P3 TSL 1 (best) BASIC17.48■□□□□ 0.39
PTPN4P29074 AC003002.1-202ENST00000596755 1743 ntAPPRIS P1 BASIC17.48■□□□□ 0.39
PTPN4P29074 ASPH-211ENST00000518068 2744 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
PTPN4P29074 STRA8-201ENST00000275764 993 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
PTPN4P29074 TDRD7-201ENST00000355295 3834 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
PTPN4P29074 MIR564-202ENST00000385049 94 ntBASIC17.48■□□□□ 0.39
PTPN4P29074 RASGRP2-208ENST00000394428 444 ntTSL 2 BASIC17.48■□□□□ 0.39
PTPN4P29074 CXCL12-204ENST00000395793 665 ntTSL 5 BASIC17.48■□□□□ 0.39
PTPN4P29074 AC093734.1-201ENST00000416100 242 ntTSL 3 BASIC17.48■□□□□ 0.39
PTPN4P29074 LINC01128-207ENST00000449005 874 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
PTPN4P29074 PRAP1-202ENST00000463201 587 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
PTPN4P29074 CUTA-210ENST00000488034 769 ntAPPRIS ALT1 TSL 2 BASIC17.48■□□□□ 0.39
PTPN4P29074 AC079031.1-201ENST00000542627 1035 ntTSL 3 BASIC17.48■□□□□ 0.39
PTPN4P29074 LINC01582-202ENST00000561215 452 ntTSL 4 BASIC17.48■□□□□ 0.39
PTPN4P29074 THEM4-201ENST00000368814 2377 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
PTPN4P29074 ST6GALNAC6-216ENST00000622357 2396 ntAPPRIS ALT1 TSL 1 (best) BASIC17.48■□□□□ 0.39
PTPN4P29074 DHRS4L2-201ENST00000335125 1370 ntAPPRIS P2 TSL 1 (best) BASIC17.48■□□□□ 0.39
PTPN4P29074 MALT1-202ENST00000348428 9368 ntAPPRIS P4 TSL 1 (best) BASIC17.48■□□□□ 0.39
PTPN4P29074 WDR45B-201ENST00000392325 2587 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
PTPN4P29074 PCDHA6-202ENST00000527624 2231 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
PTPN4P29074 MEX3C-204ENST00000616921 3269 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
PTPN4P29074 TNKS-211ENST00000520408 1964 ntTSL 2 BASIC17.48■□□□□ 0.39
PTPN4P29074 SLC39A8-201ENST00000356736 3144 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
PTPN4P29074 PTPN5-202ENST00000396166 2299 ntTSL 2 BASIC17.47■□□□□ 0.39
PTPN4P29074 CLIC5-202ENST00000339561 2390 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
PTPN4P29074 BCL11A-209ENST00000489516 1508 ntTSL 5 BASIC17.47■□□□□ 0.39
PTPN4P29074 PPP2R2B-206ENST00000453001 2569 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
PTPN4P29074 RNF165-204ENST00000587853 2011 ntTSL 5 BASIC17.47■□□□□ 0.39
PTPN4P29074 SUSD4-202ENST00000343846 3480 ntAPPRIS P1 TSL 2 BASIC17.47■□□□□ 0.39
PTPN4P29074 OSGIN1-202ENST00000361711 2230 ntAPPRIS P1 TSL 2 BASIC17.47■□□□□ 0.39
PTPN4P29074 OR6D1P-203ENST00000641209 4860 ntBASIC17.47■□□□□ 0.39
PTPN4P29074 CROCCP1-201ENST00000426910 5675 ntBASIC17.47■□□□□ 0.39
PTPN4P29074 PGLS-201ENST00000252603 1028 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
PTPN4P29074 SLC50A1-201ENST00000303343 1137 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
PTPN4P29074 KCNK7-202ENST00000342202 1283 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
PTPN4P29074 FAM41C-202ENST00000432963 504 ntTSL 2 BASIC17.47■□□□□ 0.39
PTPN4P29074 IFT27-205ENST00000433985 1095 ntAPPRIS ALT1 TSL 1 (best) BASIC17.47■□□□□ 0.39
PTPN4P29074 ELP6-205ENST00000439305 880 ntTSL 2 BASIC17.47■□□□□ 0.39
PTPN4P29074 AP002383.4-201ENST00000442518 975 ntBASIC17.47■□□□□ 0.39
PTPN4P29074 ZNF706-206ENST00000519744 785 ntTSL 3 BASIC17.47■□□□□ 0.39
PTPN4P29074 TMEM135-209ENST00000532959 1149 ntTSL 2 BASIC17.47■□□□□ 0.39
PTPN4P29074 YPEL3-204ENST00000563788 730 ntAPPRIS P1 TSL 3 BASIC17.47■□□□□ 0.39
PTPN4P29074 MIR3180-1-201ENST00000580374 94 ntBASIC17.47■□□□□ 0.39
PTPN4P29074 MIR3180-3-201ENST00000584616 94 ntBASIC17.47■□□□□ 0.39
PTPN4P29074 TNNT1-204ENST00000585321 995 ntAPPRIS ALT2 TSL 5 BASIC17.47■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 29.1 ms