Protein–RNA interactions for Protein: P04114

APOB, Apolipoprotein B-100, humanhuman

Known RBP Predictions only

Length 4,563 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOBP04114 AL161785.2-201ENST00000427080 966 ntTSL 3 BASIC10.69□□□□□ -0.7
APOBP04114 SATB1-217ENST00000493952 626 ntTSL 3 BASIC10.69□□□□□ -0.7
APOBP04114 USB1-203ENST00000539737 1212 ntTSL 2 BASIC10.69□□□□□ -0.7
APOBP04114 AR-204ENST00000504326 3615 ntTSL 1 (best) BASIC10.69□□□□□ -0.7
APOBP04114 SDC2-202ENST00000518385 1583 ntTSL 5 BASIC10.69□□□□□ -0.7
APOBP04114 WWTR1-204ENST00000467467 1603 ntAPPRIS P1 TSL 5 BASIC10.69□□□□□ -0.7
APOBP04114 STX10-201ENST00000242770 1099 ntTSL 1 (best) BASIC10.69□□□□□ -0.7
APOBP04114 POLR1C-201ENST00000304004 1280 ntTSL 1 (best) BASIC10.69□□□□□ -0.7
APOBP04114 AC105940.2-201ENST00000421055 380 ntTSL 3 BASIC10.69□□□□□ -0.7
APOBP04114 TTC28-AS1-213ENST00000434221 972 ntTSL 3 BASIC10.69□□□□□ -0.7
APOBP04114 KRT17P7-201ENST00000451704 1104 ntBASIC10.69□□□□□ -0.7
APOBP04114 TOMM5-205ENST00000544379 635 ntTSL 2 BASIC10.69□□□□□ -0.7
APOBP04114 LINC01220-201ENST00000558575 715 ntTSL 1 (best) BASIC10.69□□□□□ -0.7
APOBP04114 TNNT1-211ENST00000588426 683 ntTSL 5 BASIC10.69□□□□□ -0.7
APOBP04114 AL161645.1-201ENST00000622716 1255 ntBASIC10.69□□□□□ -0.7
APOBP04114 DFFA-201ENST00000377036 1403 ntTSL 1 (best) BASIC10.69□□□□□ -0.7
APOBP04114 OCIAD1-202ENST00000381473 1594 ntAPPRIS P1 TSL 1 (best) BASIC10.69□□□□□ -0.7
APOBP04114 TSNARE1-205ENST00000520166 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC10.69□□□□□ -0.7
APOBP04114 TTC22-201ENST00000371274 2149 ntTSL 2 BASIC10.69□□□□□ -0.7
APOBP04114 CRHR2-207ENST00000471646 2530 ntAPPRIS P1 TSL 1 (best) BASIC10.69□□□□□ -0.7
APOBP04114 HFE-208ENST00000397022 1280 ntTSL 1 (best) BASIC10.68□□□□□ -0.7
APOBP04114 COLEC11-205ENST00000402922 1134 ntTSL 1 (best) BASIC10.68□□□□□ -0.7
APOBP04114 CC2D2B-203ENST00000423344 1241 ntTSL 2 BASIC10.68□□□□□ -0.7
APOBP04114 AC108047.1-201ENST00000457407 404 ntTSL 2 BASIC10.68□□□□□ -0.7
APOBP04114 HFE-214ENST00000488199 781 ntTSL 1 (best) BASIC10.68□□□□□ -0.7
APOBP04114 GLI4-207ENST00000521682 1082 ntTSL 3 BASIC10.68□□□□□ -0.7
APOBP04114 WASH4P-201ENST00000564273 1246 ntBASIC10.68□□□□□ -0.7
APOBP04114 GAS2L1P2-202ENST00000442849 2262 ntTSL 1 (best) BASIC10.68□□□□□ -0.7
APOBP04114 PLTP-204ENST00000420868 1420 ntTSL 2 BASIC10.68□□□□□ -0.7
APOBP04114 PLPBP-201ENST00000328195 2558 ntAPPRIS P1 TSL 1 (best) BASIC10.68□□□□□ -0.7
APOBP04114 EPB41L2-211ENST00000525271 2568 ntTSL 2 BASIC10.68□□□□□ -0.7
APOBP04114 AQP11-201ENST00000313578 2152 ntAPPRIS P1 TSL 1 (best) BASIC10.68□□□□□ -0.7
APOBP04114 NR1H3-204ENST00000407404 1330 ntTSL 5 BASIC10.68□□□□□ -0.7
APOBP04114 TRNT1-205ENST00000402675 1935 ntTSL 2 BASIC10.68□□□□□ -0.7
APOBP04114 SLC27A3-204ENST00000368661 2410 ntAPPRIS P2 TSL 1 (best) BASIC10.68□□□□□ -0.7
APOBP04114 SLC5A10-205ENST00000417251 1984 ntTSL 2 BASIC10.68□□□□□ -0.7
APOBP04114 BEX3-203ENST00000372635 805 ntAPPRIS P1 TSL 2 BASIC10.68□□□□□ -0.7
APOBP04114 MFAP2-201ENST00000375534 970 ntAPPRIS P1 TSL 2 BASIC10.68□□□□□ -0.7
APOBP04114 IL11-202ENST00000585513 1201 ntAPPRIS P1 TSL 1 (best) BASIC10.68□□□□□ -0.7
APOBP04114 AC108010.1-201ENST00000605862 1107 ntTSL 5 BASIC10.68□□□□□ -0.7
APOBP04114 CIZ1-226ENST00000629610 2855 ntAPPRIS ALT2 TSL 2 BASIC10.68□□□□□ -0.7
APOBP04114 DMWD-202ENST00000377735 3292 ntAPPRIS ALT2 TSL 5 BASIC10.68□□□□□ -0.7
APOBP04114 AC007541.1-201ENST00000570282 1469 ntBASIC10.68□□□□□ -0.7
APOBP04114 GRK2-201ENST00000308595 3466 ntAPPRIS P1 TSL 1 (best) BASIC10.68□□□□□ -0.7
APOBP04114 COMMD5-202ENST00000402718 1305 ntAPPRIS P1 TSL 1 (best) BASIC10.68□□□□□ -0.7
APOBP04114 LINC01301-205ENST00000531654 1347 ntTSL 5 BASIC10.68□□□□□ -0.7
APOBP04114 IDH3G-212ENST00000619865 1339 ntTSL 5 BASIC10.68□□□□□ -0.7
APOBP04114 GPANK1-204ENST00000375900 1814 ntAPPRIS P1 TSL 2 BASIC10.68□□□□□ -0.7
APOBP04114 RPN2-201ENST00000237530 2515 ntAPPRIS P1 TSL 1 (best) BASIC10.68□□□□□ -0.7
APOBP04114 RARA-201ENST00000254066 2414 ntAPPRIS P1 TSL 1 (best) BASIC10.68□□□□□ -0.7
APOBP04114 PRSS36-202ENST00000418068 2446 ntTSL 2 BASIC10.68□□□□□ -0.7
APOBP04114 RGN-202ENST00000352078 1611 ntAPPRIS P1 TSL 1 (best) BASIC10.68□□□□□ -0.7
APOBP04114 USE1-201ENST00000263897 843 ntAPPRIS P2 TSL 1 (best) BASIC10.68□□□□□ -0.7
APOBP04114 MRPL9-202ENST00000368830 1296 ntAPPRIS P3 TSL 1 (best) BASIC10.68□□□□□ -0.7
APOBP04114 EFHD1-202ENST00000409613 1156 ntTSL 1 (best) BASIC10.68□□□□□ -0.7
APOBP04114 SNHG17-203ENST00000417578 880 ntTSL 2 BASIC10.68□□□□□ -0.7
APOBP04114 PTPRG-AS1-205ENST00000475371 733 ntTSL 3 BASIC10.68□□□□□ -0.7
APOBP04114 GIMAP3P-201ENST00000495150 836 ntBASIC10.68□□□□□ -0.7
APOBP04114 CLNS1A-210ENST00000528364 953 ntAPPRIS P1 TSL 3 BASIC10.68□□□□□ -0.7
APOBP04114 CSF1R-209ENST00000543093 921 ntTSL 1 (best) BASIC10.68□□□□□ -0.7
APOBP04114 AC090607.3-202ENST00000558971 383 ntTSL 3 BASIC10.68□□□□□ -0.7
APOBP04114 KF456478.1-201ENST00000585980 472 ntTSL 3 BASIC10.68□□□□□ -0.7
APOBP04114 HEXIM2-206ENST00000591576 1176 ntAPPRIS P1 TSL 1 (best) BASIC10.68□□□□□ -0.7
APOBP04114 AC073389.1-201ENST00000595595 795 ntBASIC10.68□□□□□ -0.7
APOBP04114 AC073592.8-201ENST00000624126 511 ntBASIC10.68□□□□□ -0.7
APOBP04114 AC118344.1-201ENST00000378432 1462 ntTSL 2 BASIC10.68□□□□□ -0.7
APOBP04114 MCHR2-202ENST00000369212 1311 ntAPPRIS P1 TSL 1 (best) BASIC10.68□□□□□ -0.7
APOBP04114 DHRS4L2-205ENST00000543805 1334 ntTSL 5 BASIC10.68□□□□□ -0.7
APOBP04114 MKRN3-203ENST00000568252 1312 ntTSL 1 (best) BASIC10.68□□□□□ -0.7
APOBP04114 PRKAR1B-212ENST00000544935 2494 ntAPPRIS P1 TSL 5 BASIC10.68□□□□□ -0.7
APOBP04114 GDPD3-202ENST00000406256 1397 ntAPPRIS P1 TSL 1 (best) BASIC10.68□□□□□ -0.7
APOBP04114 CHCHD3-201ENST00000262570 1598 ntAPPRIS P1 TSL 1 (best) BASIC10.68□□□□□ -0.7
APOBP04114 NEIL1-221ENST00000569035 1797 ntAPPRIS P1 TSL 1 (best) BASIC10.68□□□□□ -0.7
APOBP04114 PCDHGB3-202ENST00000618934 2445 ntAPPRIS P1 BASIC10.68□□□□□ -0.7
APOBP04114 GAS6-201ENST00000327773 2490 ntAPPRIS P1 TSL 1 (best) BASIC10.68□□□□□ -0.7
APOBP04114 PSTPIP1-203ENST00000558012 1896 ntAPPRIS P2 TSL 1 (best) BASIC10.68□□□□□ -0.7
APOBP04114 SMARCD2-203ENST00000448276 2716 ntAPPRIS P1 TSL 1 (best) BASIC10.68□□□□□ -0.7
APOBP04114 SOD1-201ENST00000270142 966 ntAPPRIS P1 TSL 1 (best) BASIC10.68□□□□□ -0.7
APOBP04114 AC008443.3-201ENST00000412295 549 ntTSL 4 BASIC10.68□□□□□ -0.7
APOBP04114 AC093459.1-202ENST00000438963 768 ntTSL 3 BASIC10.68□□□□□ -0.7
APOBP04114 AC135178.3-201ENST00000583963 531 ntTSL 4 BASIC10.68□□□□□ -0.7
APOBP04114 CHCHD2P3-201ENST00000603038 451 ntBASIC10.68□□□□□ -0.7
APOBP04114 IFI27-210ENST00000616764 716 ntAPPRIS P2 TSL 2 BASIC10.68□□□□□ -0.7
APOBP04114 IFI27-213ENST00000620066 719 ntAPPRIS ALT2 TSL 1 (best) BASIC10.68□□□□□ -0.7
APOBP04114 PAN3-201ENST00000380958 2833 ntAPPRIS P2 TSL 5 BASIC10.68□□□□□ -0.7
APOBP04114 AC135776.1-201ENST00000319817 2481 ntBASIC10.68□□□□□ -0.7
APOBP04114 FUT2-201ENST00000391876 1593 ntAPPRIS P1 TSL 2 BASIC10.68□□□□□ -0.7
APOBP04114 SUSD4-208ENST00000494793 1833 ntTSL 5 BASIC10.68□□□□□ -0.7
APOBP04114 GYG1-214ENST00000627418 1831 ntTSL 5 BASIC10.68□□□□□ -0.7
APOBP04114 UBE2I-203ENST00000397514 2976 ntAPPRIS P1 TSL 1 (best) BASIC10.68□□□□□ -0.7
APOBP04114 CCDC88C-203ENST00000389856 1641 ntTSL 1 (best) BASIC10.68□□□□□ -0.7
APOBP04114 HFE2-205ENST00000497365 1419 ntTSL 1 (best) BASIC10.67□□□□□ -0.7
APOBP04114 BCAM-201ENST00000270233 2402 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
APOBP04114 ANKRD2-203ENST00000370655 1451 ntTSL 1 (best) BASIC10.67□□□□□ -0.7
APOBP04114 PWP1-202ENST00000541166 1722 ntTSL 2 BASIC10.67□□□□□ -0.7
APOBP04114 ORMDL1-203ENST00000392350 2009 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
APOBP04114 TPT1-AS1-215ENST00000522673 1519 ntTSL 5 BASIC10.67□□□□□ -0.7
APOBP04114 ASMT-201ENST00000381229 1087 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
APOBP04114 FBLN7-204ENST00000409667 1124 ntTSL 1 (best) BASIC10.67□□□□□ -0.7
APOBP04114 ZSCAN2-213ENST00000541040 965 ntTSL 1 (best) BASIC10.67□□□□□ -0.7
Retrieved 100 of 98,524 protein–RNA pairs in 22.8 ms