Protein–RNA interactions for Protein: O95096

NKX2-2, Homeobox protein Nkx-2.2, humanhuman

Predictions only

Length 273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-2O95096 AC093459.1-201ENST00000444567 481 ntTSL 3 BASIC16.03■□□□□ 0.16
NKX2-2O95096 IMMP2L-207ENST00000452895 833 ntAPPRIS P1 TSL 5 BASIC16.03■□□□□ 0.16
NKX2-2O95096 HOXB-AS4-202ENST00000480386 566 ntTSL 4 BASIC16.03■□□□□ 0.16
NKX2-2O95096 AC034243.1-201ENST00000520838 587 ntTSL 2 BASIC16.03■□□□□ 0.16
NKX2-2O95096 GPHA2-202ENST00000532246 466 ntTSL 3 BASIC16.03■□□□□ 0.16
NKX2-2O95096 MTHFSD-203ENST00000543303 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
NKX2-2O95096 FGFR1OP2-206ENST00000546072 956 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
NKX2-2O95096 MCRIP1-206ENST00000573478 1123 ntTSL 2 BASIC16.03■□□□□ 0.16
NKX2-2O95096 COPE-211ENST00000600932 1144 ntTSL 5 BASIC16.03■□□□□ 0.16
NKX2-2O95096 CHST13-202ENST00000615522 1146 ntTSL 5 BASIC16.03■□□□□ 0.16
NKX2-2O95096 MTHFSD-220ENST00000634347 1207 ntAPPRIS P3 TSL 1 (best) BASIC16.03■□□□□ 0.16
NKX2-2O95096 KIAA1549-201ENST00000422774 6283 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
NKX2-2O95096 ATAD3A-207ENST00000536055 2332 ntTSL 2 BASIC16.03■□□□□ 0.16
NKX2-2O95096 STX2-201ENST00000261653 3331 ntAPPRIS ALT1 TSL 1 (best) BASIC16.03■□□□□ 0.16
NKX2-2O95096 ADIRF-AS1-201ENST00000418273 2627 ntTSL 3 BASIC16.03■□□□□ 0.16
NKX2-2O95096 HSF2-202ENST00000452194 2643 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
NKX2-2O95096 DCLK2-204ENST00000506325 2298 ntAPPRIS ALT2 TSL 5 BASIC16.03■□□□□ 0.16
NKX2-2O95096 AP1S2-201ENST00000329235 2237 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
NKX2-2O95096 GPBAR1-201ENST00000479077 1869 ntAPPRIS P1 TSL 2 BASIC16.03■□□□□ 0.16
NKX2-2O95096 TSR2-201ENST00000375151 1534 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
NKX2-2O95096 WRAP53-203ENST00000431639 1818 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
NKX2-2O95096 WRAP53-204ENST00000457584 1828 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
NKX2-2O95096 ZDHHC9-202ENST00000371064 2473 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
NKX2-2O95096 TAL1-201ENST00000294339 5001 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
NKX2-2O95096 LINC01148-201ENST00000557527 1763 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
NKX2-2O95096 REEP1-208ENST00000538924 1702 ntTSL 5 BASIC16.02■□□□□ 0.16
NKX2-2O95096 SPSB4-201ENST00000310546 2908 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
NKX2-2O95096 GNAI2-204ENST00000440628 1663 ntTSL 5 BASIC16.02■□□□□ 0.16
NKX2-2O95096 RWDD4-202ENST00000327570 2590 ntAPPRIS ALT1 TSL 3 BASIC16.02■□□□□ 0.16
NKX2-2O95096 GGNBP2-212ENST00000613102 2847 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
NKX2-2O95096 QSOX1-201ENST00000367600 2519 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.16
NKX2-2O95096 RNPS1-202ENST00000320225 2241 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
NKX2-2O95096 MED25-202ENST00000538643 1623 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
NKX2-2O95096 AL121761.2-201ENST00000598007 1648 ntBASIC16.02■□□□□ 0.16
NKX2-2O95096 TDRP-201ENST00000324079 3395 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
NKX2-2O95096 COL9A1-201ENST00000320755 3059 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
NKX2-2O95096 TMEM214-201ENST00000238788 2990 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
NKX2-2O95096 TYMS-202ENST00000323250 693 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
NKX2-2O95096 VMO1-202ENST00000354194 651 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
NKX2-2O95096 MRPL52-202ENST00000355151 1118 ntAPPRIS ALT1 TSL 1 (best) BASIC16.02■□□□□ 0.16
NKX2-2O95096 RPUSD3-201ENST00000383820 1225 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
NKX2-2O95096 MRPL52-203ENST00000397496 1111 ntAPPRIS P3 TSL 2 BASIC16.02■□□□□ 0.16
NKX2-2O95096 AL022314.1-201ENST00000414203 464 ntTSL 5 BASIC16.02■□□□□ 0.16
NKX2-2O95096 KNCN-203ENST00000481882 1037 ntAPPRIS ALT2 TSL 5 BASIC16.02■□□□□ 0.16
NKX2-2O95096 S100A2-206ENST00000497140 697 ntTSL 2 BASIC16.02■□□□□ 0.16
NKX2-2O95096 KLK12-203ENST00000525263 1077 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.16
NKX2-2O95096 TMEM218-203ENST00000526175 972 ntAPPRIS P1 TSL 3 BASIC16.02■□□□□ 0.16
NKX2-2O95096 SDHD-206ENST00000528182 754 ntTSL 3 BASIC16.02■□□□□ 0.16
NKX2-2O95096 PLPP5-214ENST00000531823 875 ntTSL 3 BASIC16.02■□□□□ 0.16
NKX2-2O95096 AC009061.1-201ENST00000567261 475 ntTSL 3 BASIC16.02■□□□□ 0.16
NKX2-2O95096 AC135776.2-201ENST00000567803 714 ntTSL 4 BASIC16.02■□□□□ 0.16
NKX2-2O95096 CYB561-217ENST00000582997 877 ntTSL 5 BASIC16.02■□□□□ 0.16
NKX2-2O95096 MTDHP3-201ENST00000594186 672 ntBASIC16.02■□□□□ 0.16
NKX2-2O95096 FFAR2-202ENST00000599180 2133 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
NKX2-2O95096 AL590235.2-202ENST00000602543 594 ntTSL 5 BASIC16.02■□□□□ 0.16
NKX2-2O95096 AC004817.3-201ENST00000602957 2129 ntBASIC16.02■□□□□ 0.16
NKX2-2O95096 REXO1L6P-202ENST00000619970 1078 ntBASIC16.02■□□□□ 0.16
NKX2-2O95096 AL355877.3-201ENST00000622820 899 ntBASIC16.02■□□□□ 0.16
NKX2-2O95096 AC012313.10-201ENST00000623509 926 ntBASIC16.02■□□□□ 0.16
NKX2-2O95096 AL139288.1-201ENST00000623748 933 ntBASIC16.02■□□□□ 0.16
NKX2-2O95096 SLCO4A1-202ENST00000370507 2665 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
NKX2-2O95096 ZSCAN10-202ENST00000538082 2350 ntTSL 4 BASIC16.02■□□□□ 0.15
NKX2-2O95096 LCORL-201ENST00000326877 5604 ntTSL 1 (best) BASIC16.02■□□□□ 0.15
NKX2-2O95096 KDM1A-201ENST00000356634 3033 ntAPPRIS P3 TSL 1 (best) BASIC16.02■□□□□ 0.15
NKX2-2O95096 SEPT2-245ENST00000616972 3446 ntTSL 2 BASIC16.01■□□□□ 0.15
NKX2-2O95096 GID4-202ENST00000376345 1391 ntTSL 3 BASIC16.01■□□□□ 0.15
NKX2-2O95096 SEPHS1-202ENST00000378614 2387 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
NKX2-2O95096 ANKRD29-208ENST00000592179 3361 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
NKX2-2O95096 TBXAS1-210ENST00000458722 2057 ntTSL 2 BASIC16.01■□□□□ 0.15
NKX2-2O95096 ABHD3-209ENST00000580981 1836 ntTSL 5 BASIC16.01■□□□□ 0.15
NKX2-2O95096 FAM53A-207ENST00000489363 2776 ntTSL 2 BASIC16.01■□□□□ 0.15
NKX2-2O95096 DNM1-202ENST00000372923 3244 ntAPPRIS P3 TSL 1 (best) BASIC16.01■□□□□ 0.15
NKX2-2O95096 HOXB1-201ENST00000239174 2020 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
NKX2-2O95096 AL034417.2-201ENST00000445300 2044 ntTSL 2 BASIC16.01■□□□□ 0.15
NKX2-2O95096 OR2C3-203ENST00000617752 2481 ntAPPRIS P1 BASIC16.01■□□□□ 0.15
NKX2-2O95096 DNM1-216ENST00000634267 2909 ntTSL 5 BASIC16.01■□□□□ 0.15
NKX2-2O95096 TMEM14A-201ENST00000211314 992 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
NKX2-2O95096 MCRIP2-201ENST00000307650 946 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
NKX2-2O95096 SMOX-204ENST00000346595 982 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
NKX2-2O95096 PRSS38-201ENST00000366757 1267 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
NKX2-2O95096 HLA-DMA-201ENST00000374843 1123 ntAPPRIS P1 BASIC16.01■□□□□ 0.15
NKX2-2O95096 C6orf48-203ENST00000375638 847 ntAPPRIS P1 TSL 2 BASIC16.01■□□□□ 0.15
NKX2-2O95096 C6orf48-207ENST00000375642 962 ntAPPRIS P1 TSL 2 BASIC16.01■□□□□ 0.15
NKX2-2O95096 CD99-205ENST00000381192 1245 ntAPPRIS P3 TSL 1 (best) BASIC16.01■□□□□ 0.15
NKX2-2O95096 AL645941.2-201ENST00000429234 612 ntAPPRIS P1 TSL 2 BASIC16.01■□□□□ 0.15
NKX2-2O95096 AGBL5-AS1-201ENST00000444217 407 ntTSL 5 BASIC16.01■□□□□ 0.15
NKX2-2O95096 AL611929.1-201ENST00000457340 449 ntTSL 3 BASIC16.01■□□□□ 0.15
NKX2-2O95096 NDUFB9-204ENST00000518008 789 ntTSL 2 BASIC16.01■□□□□ 0.15
NKX2-2O95096 AC124947.2-201ENST00000547118 1133 ntBASIC16.01■□□□□ 0.15
NKX2-2O95096 PSME1-205ENST00000559123 1033 ntTSL 5 BASIC16.01■□□□□ 0.15
NKX2-2O95096 HDDC3-205ENST00000559898 1024 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
NKX2-2O95096 TRAF7-205ENST00000567653 666 ntTSL 2 BASIC16.01■□□□□ 0.15
NKX2-2O95096 FGF11-204ENST00000575235 928 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
NKX2-2O95096 NKAPP1-205ENST00000585790 367 ntBASIC16.01■□□□□ 0.15
NKX2-2O95096 FAM86DP-207ENST00000497543 2152 ntTSL 2 BASIC16.01■□□□□ 0.15
NKX2-2O95096 RAB40C-205ENST00000539661 2609 ntAPPRIS P1 TSL 3 BASIC16.01■□□□□ 0.15
NKX2-2O95096 AC012313.1-201ENST00000593393 3059 ntBASIC16.01■□□□□ 0.15
NKX2-2O95096 FARP1-242ENST00000627049 5103 ntTSL 5 BASIC16.01■□□□□ 0.15
NKX2-2O95096 TXNL4A-201ENST00000269601 3504 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
NKX2-2O95096 IFNL4-204ENST00000634967 1493 ntAPPRIS ALT2 TSL 1 (best) BASIC16.01■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 49.8 ms