Protein–RNA interactions for Protein: O75056

SDC3, Syndecan-3, humanhuman

Predictions only

Length 442 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3O75056 CLDND1-204ENST00000394185 2159 ntAPPRIS P1 TSL 5 BASIC16.96■□□□□ 0.31
SDC3O75056 SAMD11-214ENST00000618323 2159 ntTSL 5 BASIC16.96■□□□□ 0.31
SDC3O75056 EIF4A1-203ENST00000577269 1319 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
SDC3O75056 CITED2-201ENST00000367651 2354 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
SDC3O75056 AC074389.1-201ENST00000382528 1423 ntTSL 2 BASIC16.96■□□□□ 0.31
SDC3O75056 MZF1-206ENST00000599369 2587 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
SDC3O75056 NUDT9-201ENST00000302174 1701 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
SDC3O75056 KIAA1522-202ENST00000373480 5294 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.31
SDC3O75056 KIAA1522-203ENST00000373481 5293 ntAPPRIS ALT2 TSL 2 BASIC16.96■□□□□ 0.31
SDC3O75056 RNPS1-205ENST00000561718 1806 ntTSL 3 BASIC16.96■□□□□ 0.31
SDC3O75056 PTPN21-208ENST00000556564 6166 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
SDC3O75056 MARK4-210ENST00000620044 2105 ntTSL 5 BASIC16.96■□□□□ 0.31
SDC3O75056 BLOC1S2-202ENST00000370372 1249 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
SDC3O75056 CMTM2-202ENST00000379486 904 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.31
SDC3O75056 HUS1B-201ENST00000380907 1025 ntAPPRIS P1 BASIC16.96■□□□□ 0.31
SDC3O75056 MKNK2P1-201ENST00000437526 628 ntBASIC16.96■□□□□ 0.31
SDC3O75056 FAM118B-206ENST00000529731 1028 ntTSL 5 BASIC16.96■□□□□ 0.31
SDC3O75056 AC010615.2-202ENST00000597444 832 ntTSL 3 BASIC16.96■□□□□ 0.31
SDC3O75056 TUBB4A-209ENST00000598006 565 ntTSL 2 BASIC16.96■□□□□ 0.31
SDC3O75056 SKIDA1-202ENST00000449193 6598 ntAPPRIS P2 TSL 3 BASIC16.96■□□□□ 0.31
SDC3O75056 CLN3-203ENST00000357806 1469 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
SDC3O75056 GPSM3-206ENST00000375040 1476 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
SDC3O75056 SDC2-202ENST00000518385 1583 ntTSL 5 BASIC16.96■□□□□ 0.31
SDC3O75056 FDXR-217ENST00000582944 1766 ntTSL 2 BASIC16.96■□□□□ 0.31
SDC3O75056 C16orf59-204ENST00000563531 1864 ntAPPRIS ALT2 TSL 5 BASIC16.96■□□□□ 0.31
SDC3O75056 SNX1-208ENST00000559844 1971 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
SDC3O75056 RUNDC3B-203ENST00000394654 2064 ntAPPRIS P4 TSL 2 BASIC16.96■□□□□ 0.31
SDC3O75056 PRSS53-201ENST00000280606 2181 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
SDC3O75056 TBC1D20-201ENST00000354200 4466 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
SDC3O75056 INTS10-201ENST00000397977 2804 ntAPPRIS P1 TSL 2 BASIC16.96■□□□□ 0.3
SDC3O75056 PXK-206ENST00000463280 2825 ntTSL 2 BASIC16.96■□□□□ 0.3
SDC3O75056 A4GALT-203ENST00000401850 2321 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
SDC3O75056 CTSD-212ENST00000637815 2003 ntAPPRIS ALT2 TSL 5 BASIC16.96■□□□□ 0.3
SDC3O75056 SNTG2-202ENST00000407292 1436 ntTSL 1 (best) BASIC16.96■□□□□ 0.3
SDC3O75056 AC010619.2-201ENST00000595815 1421 ntTSL 2 BASIC16.96■□□□□ 0.3
SDC3O75056 SCRIB-201ENST00000320476 5143 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
SDC3O75056 SNAP47-201ENST00000315781 2367 ntAPPRIS P3 TSL 1 (best) BASIC16.95■□□□□ 0.3
SDC3O75056 SLC12A9-215ENST00000540482 2269 ntTSL 2 BASIC16.95■□□□□ 0.3
SDC3O75056 KAZN-203ENST00000376030 6030 ntAPPRIS P1 TSL 5 BASIC16.95■□□□□ 0.3
SDC3O75056 HARBI1-201ENST00000326737 1967 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
SDC3O75056 KIZ-211ENST00000619574 1971 ntAPPRIS ALT2 TSL 2 BASIC16.95■□□□□ 0.3
SDC3O75056 KCTD20-210ENST00000536244 5345 ntTSL 2 BASIC16.95■□□□□ 0.3
SDC3O75056 CPAMD8-203ENST00000443236 5992 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
SDC3O75056 THOP1-201ENST00000307741 4804 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
SDC3O75056 PNPLA2-201ENST00000336615 2428 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
SDC3O75056 ZNF74-202ENST00000400451 3159 ntAPPRIS P2 TSL 1 (best) BASIC16.95■□□□□ 0.3
SDC3O75056 MAN2A1-201ENST00000261483 4667 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
SDC3O75056 C22orf39-201ENST00000333059 1221 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
SDC3O75056 ID3-201ENST00000374561 1251 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
SDC3O75056 SNHG17-206ENST00000436764 973 ntTSL 5 BASIC16.95■□□□□ 0.3
SDC3O75056 AC023355.1-201ENST00000560323 752 ntTSL 3 BASIC16.95■□□□□ 0.3
SDC3O75056 AC068594.1-203ENST00000581153 695 ntTSL 2 BASIC16.95■□□□□ 0.3
SDC3O75056 AC010735.2-201ENST00000607970 584 ntTSL 4 BASIC16.95■□□□□ 0.3
SDC3O75056 AC244153.1-202ENST00000617855 482 ntTSL 3 BASIC16.95■□□□□ 0.3
SDC3O75056 AL356481.3-201ENST00000630523 575 ntTSL 5 BASIC16.95■□□□□ 0.3
SDC3O75056 AC013275.1-201ENST00000413602 2019 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
SDC3O75056 ISOC1-201ENST00000173527 1940 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
SDC3O75056 TRAF3-203ENST00000392745 2459 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
SDC3O75056 PCMTD1-206ENST00000521344 1712 ntTSL 3 BASIC16.95■□□□□ 0.3
SDC3O75056 ANKRD17-211ENST00000639793 3486 ntTSL 5 BASIC16.95■□□□□ 0.3
SDC3O75056 KCNJ10-208ENST00000639408 1546 ntTSL 5 BASIC16.95■□□□□ 0.3
SDC3O75056 TH-205ENST00000381175 1898 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
SDC3O75056 PNRC1-202ENST00000354922 1345 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
SDC3O75056 MTSS1L-204ENST00000616026 2241 ntAPPRIS ALT2 TSL 5 BASIC16.94■□□□□ 0.3
SDC3O75056 PRSS23-201ENST00000280258 4015 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
SDC3O75056 FZD1-201ENST00000287934 6963 ntAPPRIS P1 BASIC16.94■□□□□ 0.3
SDC3O75056 RAB7A-203ENST00000482525 1589 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
SDC3O75056 COPS7A-204ENST00000534947 2034 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
SDC3O75056 MADD-208ENST00000405573 1823 ntTSL 5 BASIC16.94■□□□□ 0.3
SDC3O75056 AL138781.2-201ENST00000617896 1843 ntBASIC16.94■□□□□ 0.3
SDC3O75056 GRB10-205ENST00000401949 2627 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
SDC3O75056 DAPK2-202ENST00000457488 1741 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
SDC3O75056 AC009113.1-201ENST00000570267 2443 ntBASIC16.94■□□□□ 0.3
SDC3O75056 TMEM179B-201ENST00000333449 1023 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
SDC3O75056 CKLF-204ENST00000362093 412 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
SDC3O75056 AL049612.1-201ENST00000427017 694 ntTSL 5 BASIC16.94■□□□□ 0.3
SDC3O75056 PON3-203ENST00000427422 894 ntTSL 3 BASIC16.94■□□□□ 0.3
SDC3O75056 LINC00899-202ENST00000444890 493 ntTSL 3 BASIC16.94■□□□□ 0.3
SDC3O75056 AKIRIN1-203ENST00000446189 1243 ntTSL 2 BASIC16.94■□□□□ 0.3
SDC3O75056 MLF1-210ENST00000484955 1247 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
SDC3O75056 AC093714.2-201ENST00000489626 763 ntTSL 3 BASIC16.94■□□□□ 0.3
SDC3O75056 PUS1-205ENST00000535067 838 ntTSL 3 BASIC16.94■□□□□ 0.3
SDC3O75056 PXN-AS1-202ENST00000538804 508 ntTSL 4 BASIC16.94■□□□□ 0.3
SDC3O75056 PDCD6-214ENST00000628729 1073 ntTSL 5 BASIC16.94■□□□□ 0.3
SDC3O75056 DACH1-202ENST00000613252 5233 ntAPPRIS P2 TSL 1 (best) BASIC16.94■□□□□ 0.3
SDC3O75056 PSAP-205ENST00000610929 1969 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
SDC3O75056 MTMR12-201ENST00000264934 2215 ntTSL 2 BASIC16.94■□□□□ 0.3
SDC3O75056 IGFBP4-201ENST00000269593 2200 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
SDC3O75056 CD14-201ENST00000302014 1886 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
SDC3O75056 LUC7L-204ENST00000397783 1504 ntTSL 2 BASIC16.94■□□□□ 0.3
SDC3O75056 KRT18P55-202ENST00000578578 1546 ntBASIC16.94■□□□□ 0.3
SDC3O75056 SLC22A17-204ENST00000397267 2455 ntAPPRIS P4 TSL 5 BASIC16.94■□□□□ 0.3
SDC3O75056 COQ10A-202ENST00000433805 1410 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
SDC3O75056 CTSH-201ENST00000220166 2190 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
SDC3O75056 PDLIM7-203ENST00000359895 1567 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
SDC3O75056 ECE2-201ENST00000324557 1823 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
SDC3O75056 ENTPD2-202ENST00000355097 2095 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
SDC3O75056 AC007613.1-201ENST00000572811 2597 ntBASIC16.93■□□□□ 0.3
SDC3O75056 ZBTB10-205ENST00000610895 2833 ntAPPRIS ALT2 TSL 2 BASIC16.93■□□□□ 0.3
SDC3O75056 HIST1H2BN-204ENST00000612898 1723 ntAPPRIS P1 BASIC16.93■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 46.5 ms