Protein–RNA interactions for Protein: O60840

CACNA1F, Voltage-dependent L-type calcium channel subunit alpha-1F, humanhuman

Predictions only

Length 1,977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1FO60840 OR2C3-203ENST00000617752 2481 ntAPPRIS P1 BASIC21.66■■□□□ 1.06
CACNA1FO60840 HLA-F-218ENST00000376861 1544 ntAPPRIS ALT2 BASIC21.66■■□□□ 1.06
CACNA1FO60840 CCDC189-204ENST00000541260 1531 ntTSL 5 BASIC21.66■■□□□ 1.06
CACNA1FO60840 LINC00957-202ENST00000441052 2590 ntTSL 2 BASIC21.66■■□□□ 1.06
CACNA1FO60840 CTSB-232ENST00000534510 1989 ntAPPRIS P1 TSL 5 BASIC21.66■■□□□ 1.06
CACNA1FO60840 CAPG-203ENST00000409670 1183 ntAPPRIS P1 TSL 5 BASIC21.66■■□□□ 1.06
CACNA1FO60840 CXCL1P1-201ENST00000502804 216 ntBASIC21.66■■□□□ 1.06
CACNA1FO60840 AC087386.1-201ENST00000553658 572 ntTSL 4 BASIC21.66■■□□□ 1.06
CACNA1FO60840 SLC25A3P1-206ENST00000569142 925 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
CACNA1FO60840 METTL23-215ENST00000615984 1171 ntAPPRIS P1 TSL 2 BASIC21.66■■□□□ 1.06
CACNA1FO60840 SIL1-213ENST00000509534 1714 ntTSL 5 BASIC21.66■■□□□ 1.06
CACNA1FO60840 AGAP6-201ENST00000374056 2703 ntAPPRIS ALT2 TSL 1 (best) BASIC21.66■■□□□ 1.06
CACNA1FO60840 AC079922.2-201ENST00000457336 2022 ntTSL 2 BASIC21.66■■□□□ 1.06
CACNA1FO60840 CBS-201ENST00000352178 2583 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
CACNA1FO60840 NCAPH2-203ENST00000395701 2077 ntTSL 2 BASIC21.65■■□□□ 1.06
CACNA1FO60840 CPT2-208ENST00000636891 2746 ntTSL 5 BASIC21.65■■□□□ 1.06
CACNA1FO60840 CMIP-201ENST00000398040 2825 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
CACNA1FO60840 PFN2-201ENST00000239940 2261 ntAPPRIS P3 TSL 1 (best) BASIC21.65■■□□□ 1.06
CACNA1FO60840 EIF4A3-201ENST00000269349 1734 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
CACNA1FO60840 MAT2A-202ENST00000409017 1927 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
CACNA1FO60840 SMARCC2-203ENST00000394023 4271 ntAPPRIS ALT2 TSL 1 (best) BASIC21.65■■□□□ 1.06
CACNA1FO60840 NOL4L-205ENST00000375678 2042 ntAPPRIS ALT2 TSL 2 BASIC21.65■■□□□ 1.06
CACNA1FO60840 EIF6-202ENST00000374443 1017 ntTSL 5 BASIC21.65■■□□□ 1.06
CACNA1FO60840 TMEM220-AS1-206ENST00000583343 876 ntTSL 3 BASIC21.65■■□□□ 1.06
CACNA1FO60840 SIGLEC29P-201ENST00000599873 1114 ntBASIC21.65■■□□□ 1.06
CACNA1FO60840 FENDRR-206ENST00000599749 2843 ntTSL 3 BASIC21.65■■□□□ 1.06
CACNA1FO60840 ADRA1A-202ENST00000354550 1765 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
CACNA1FO60840 SARDH-202ENST00000371867 1326 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
CACNA1FO60840 BSCL2-210ENST00000421906 1440 ntAPPRIS P3 TSL 5 BASIC21.65■■□□□ 1.06
CACNA1FO60840 ABHD3-209ENST00000580981 1836 ntTSL 5 BASIC21.65■■□□□ 1.06
CACNA1FO60840 ANKRD17-211ENST00000639793 3486 ntTSL 5 BASIC21.65■■□□□ 1.06
CACNA1FO60840 TTLL3-209ENST00000426895 2767 ntAPPRIS P2 TSL 2 BASIC21.65■■□□□ 1.06
CACNA1FO60840 DOCK7-203ENST00000404627 2678 ntTSL 2 BASIC21.65■■□□□ 1.06
CACNA1FO60840 WBP2-219ENST00000626827 1867 ntTSL 5 BASIC21.65■■□□□ 1.06
CACNA1FO60840 SLC22A20-204ENST00000530038 1673 ntBASIC21.65■■□□□ 1.06
CACNA1FO60840 FGFBP1-201ENST00000382333 1359 ntAPPRIS P1 TSL 3 BASIC21.65■■□□□ 1.06
CACNA1FO60840 TMEM44-201ENST00000330115 1278 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
CACNA1FO60840 SH3TC1-202ENST00000382521 829 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
CACNA1FO60840 AC023274.1-201ENST00000418278 595 ntBASIC21.65■■□□□ 1.06
CACNA1FO60840 EFCAB1-209ENST00000523092 648 ntTSL 2 BASIC21.65■■□□□ 1.06
CACNA1FO60840 KIRREL3-AS1-201ENST00000548204 586 ntTSL 3 BASIC21.65■■□□□ 1.06
CACNA1FO60840 L2HGDH-205ENST00000555423 841 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
CACNA1FO60840 AC005412.3-201ENST00000580309 715 ntBASIC21.65■■□□□ 1.06
CACNA1FO60840 AC004877.2-201ENST00000623941 599 ntBASIC21.65■■□□□ 1.06
CACNA1FO60840 AC092865.6-201ENST00000642101 219 ntBASIC21.65■■□□□ 1.06
CACNA1FO60840 TRIM8-201ENST00000302424 2831 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
CACNA1FO60840 ZNF140-210ENST00000544426 2340 ntTSL 2 BASIC21.64■■□□□ 1.06
CACNA1FO60840 SPC24-206ENST00000592540 2315 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
CACNA1FO60840 C3orf18-201ENST00000357203 2655 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
CACNA1FO60840 CD72-211ENST00000612238 1424 ntAPPRIS ALT2 TSL 5 BASIC21.64■■□□□ 1.06
CACNA1FO60840 GIT1-201ENST00000225394 3768 ntAPPRIS P3 TSL 1 (best) BASIC21.64■■□□□ 1.06
CACNA1FO60840 MTERF2-201ENST00000240050 1790 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
CACNA1FO60840 NPR3-203ENST00000415167 1753 ntAPPRIS P3 TSL 1 (best) BASIC21.64■■□□□ 1.06
CACNA1FO60840 APP-203ENST00000354192 3167 ntTSL 1 (best) BASIC21.64■■□□□ 1.06
CACNA1FO60840 B3GNT3-201ENST00000318683 2226 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
CACNA1FO60840 RGS19-202ENST00000395042 1593 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
CACNA1FO60840 PAQR4-202ENST00000318782 2793 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
CACNA1FO60840 AL353732.1-201ENST00000569618 1459 ntBASIC21.64■■□□□ 1.05
CACNA1FO60840 PTPN6-204ENST00000456013 2389 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
CACNA1FO60840 PDLIM7-201ENST00000355572 977 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
CACNA1FO60840 CKLF-204ENST00000362093 412 ntAPPRIS ALT2 TSL 1 (best) BASIC21.64■■□□□ 1.05
CACNA1FO60840 AC140658.5-201ENST00000438532 169 ntBASIC21.64■■□□□ 1.05
CACNA1FO60840 CYB561D1-208ENST00000528785 1271 ntAPPRIS ALT1 TSL 5 BASIC21.64■■□□□ 1.05
CACNA1FO60840 LINC01413-201ENST00000564843 772 ntTSL 3 BASIC21.64■■□□□ 1.05
CACNA1FO60840 AC097376.2-204ENST00000609359 627 ntTSL 2 BASIC21.64■■□□□ 1.05
CACNA1FO60840 GYPC-202ENST00000356887 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC21.64■■□□□ 1.05
CACNA1FO60840 MCM9-201ENST00000316068 2442 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
CACNA1FO60840 BHMT2-205ENST00000521567 1537 ntTSL 2 BASIC21.64■■□□□ 1.05
CACNA1FO60840 ADORA2A-213ENST00000610595 2736 ntAPPRIS P1 TSL 2 BASIC21.64■■□□□ 1.05
CACNA1FO60840 AFMID-201ENST00000327898 1700 ntAPPRIS ALT2 TSL 1 (best) BASIC21.63■■□□□ 1.05
CACNA1FO60840 URAHP-203ENST00000517889 1381 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
CACNA1FO60840 RASL11B-201ENST00000248706 1995 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
CACNA1FO60840 HELT-201ENST00000338875 1008 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
CACNA1FO60840 SMN1-201ENST00000351205 900 ntAPPRIS P3 TSL 1 (best) BASIC21.63■■□□□ 1.05
CACNA1FO60840 SMN2-201ENST00000380741 900 ntAPPRIS P4 TSL 1 (best) BASIC21.63■■□□□ 1.05
CACNA1FO60840 HCG4-201ENST00000418983 998 ntBASIC21.63■■□□□ 1.05
CACNA1FO60840 BATF2-204ENST00000527716 1230 ntTSL 2 BASIC21.63■■□□□ 1.05
CACNA1FO60840 ICAM2-205ENST00000578379 1064 ntTSL 5 BASIC21.63■■□□□ 1.05
CACNA1FO60840 ICAM2-206ENST00000578892 1056 ntTSL 3 BASIC21.63■■□□□ 1.05
CACNA1FO60840 AC008403.2-204ENST00000600650 1006 ntTSL 3 BASIC21.63■■□□□ 1.05
CACNA1FO60840 PGPEP1-209ENST00000604499 769 ntTSL 5 BASIC21.63■■□□□ 1.05
CACNA1FO60840 SMN2-216ENST00000638794 846 ntAPPRIS ALT2 TSL 5 BASIC21.63■■□□□ 1.05
CACNA1FO60840 AFG3L1P-203ENST00000418696 2965 ntTSL 2 BASIC21.63■■□□□ 1.05
CACNA1FO60840 JPT1-209ENST00000482348 1614 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
CACNA1FO60840 R3HDML-201ENST00000217043 1377 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
CACNA1FO60840 LILRA6-201ENST00000245621 1395 ntAPPRIS ALT2 TSL 5 BASIC21.63■■□□□ 1.05
CACNA1FO60840 AL162586.1-201ENST00000439298 2055 ntTSL 2 BASIC21.63■■□□□ 1.05
CACNA1FO60840 PMP22-202ENST00000395936 816 ntTSL 3 BASIC21.63■■□□□ 1.05
CACNA1FO60840 C21orf33-205ENST00000427803 1077 ntTSL 2 BASIC21.63■■□□□ 1.05
CACNA1FO60840 MAGI2-AS3-208ENST00000446159 670 ntTSL 3 BASIC21.63■■□□□ 1.05
CACNA1FO60840 SFTPC-204ENST00000520605 519 ntTSL 3 BASIC21.63■■□□□ 1.05
CACNA1FO60840 SFTPC-210ENST00000524255 681 ntTSL 2 BASIC21.63■■□□□ 1.05
CACNA1FO60840 MIR4492-201ENST00000581627 80 ntBASIC21.63■■□□□ 1.05
CACNA1FO60840 TMEM265-201ENST00000615541 995 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
CACNA1FO60840 AC087289.2-201ENST00000587267 1419 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
CACNA1FO60840 RNF165-205ENST00000588679 2904 ntBASIC21.63■■□□□ 1.05
CACNA1FO60840 TRAPPC12-201ENST00000324266 2508 ntAPPRIS P2 TSL 1 (best) BASIC21.63■■□□□ 1.05
CACNA1FO60840 DCLK2-204ENST00000506325 2298 ntAPPRIS ALT2 TSL 5 BASIC21.63■■□□□ 1.05
CACNA1FO60840 KLK3-201ENST00000326003 1463 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
CACNA1FO60840 GSS-201ENST00000216951 1922 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
Retrieved 100 of 98,524 protein–RNA pairs in 42.7 ms