Protein–RNA interactions for Protein: O43248

HOXC11, Homeobox protein Hox-C11, humanhuman

Predicted RBP Predictions only

Length 304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11O43248 ATG2A-203ENST00000421419 1481 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
HOXC11O43248 ZBTB16-201ENST00000335953 2523 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
HOXC11O43248 ELL2P1-201ENST00000413990 1906 ntBASIC17.63■□□□□ 0.41
HOXC11O43248 COMP-202ENST00000425807 2292 ntTSL 2 BASIC17.63■□□□□ 0.41
HOXC11O43248 CGB7-202ENST00000596965 1949 ntAPPRIS P1 TSL 2 BASIC17.63■□□□□ 0.41
HOXC11O43248 FAM90A1-201ENST00000307435 2342 ntAPPRIS P1 TSL 2 BASIC17.63■□□□□ 0.41
HOXC11O43248 HSD17B8-203ENST00000374662 990 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
HOXC11O43248 NPY-203ENST00000407573 705 ntAPPRIS P1 TSL 3 BASIC17.63■□□□□ 0.41
HOXC11O43248 AL162231.1-204ENST00000423809 477 ntAPPRIS ALT2 TSL 3 BASIC17.63■□□□□ 0.41
HOXC11O43248 FAM185BP-201ENST00000443595 716 ntBASIC17.63■□□□□ 0.41
HOXC11O43248 AP000892.1-201ENST00000504906 488 ntTSL 3 BASIC17.63■□□□□ 0.41
HOXC11O43248 CYB561-216ENST00000582297 897 ntTSL 3 BASIC17.63■□□□□ 0.41
HOXC11O43248 TUBB2B-201ENST00000259818 2020 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
HOXC11O43248 GINM1-201ENST00000367419 2024 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
HOXC11O43248 SLX1B-SULT1A4-201ENST00000344620 2424 ntTSL 2 BASIC17.63■□□□□ 0.41
HOXC11O43248 ZNF395-211ENST00000523202 2068 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
HOXC11O43248 CBS-203ENST00000398158 2453 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
HOXC11O43248 CBSL-206ENST00000624406 2453 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
HOXC11O43248 FAM222A-202ENST00000538780 3294 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
HOXC11O43248 XXYLT1-205ENST00000437101 2149 ntTSL 2 BASIC17.63■□□□□ 0.41
HOXC11O43248 SOX11-201ENST00000322002 8719 ntAPPRIS P1 BASIC17.63■□□□□ 0.41
HOXC11O43248 TNFRSF13B-201ENST00000261652 1357 ntAPPRIS P2 TSL 1 (best) BASIC17.63■□□□□ 0.41
HOXC11O43248 GOLGA7-202ENST00000405786 1903 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
HOXC11O43248 RBFOX1-207ENST00000547338 1513 ntTSL 2 BASIC17.62■□□□□ 0.41
HOXC11O43248 DPAGT1-203ENST00000409993 3274 ntAPPRIS P1 TSL 2 BASIC17.62■□□□□ 0.41
HOXC11O43248 LZTS2-202ENST00000370223 2883 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
HOXC11O43248 AAED1-201ENST00000375234 2863 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
HOXC11O43248 KMT5A-202ENST00000402868 3140 ntAPPRIS P2 TSL 1 (best) BASIC17.62■□□□□ 0.41
HOXC11O43248 ENTPD6-209ENST00000433259 2654 ntTSL 5 BASIC17.62■□□□□ 0.41
HOXC11O43248 MYO9A-214ENST00000566885 5111 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
HOXC11O43248 CABP7-201ENST00000216144 3259 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
HOXC11O43248 SLCO4A1-201ENST00000217159 2776 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
HOXC11O43248 CACTIN-201ENST00000221899 2797 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
HOXC11O43248 SPATS2L-218ENST00000451764 2250 ntAPPRIS P1 TSL 5 BASIC17.62■□□□□ 0.41
HOXC11O43248 PRLH-201ENST00000165524 264 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
HOXC11O43248 HLA-DMA-201ENST00000374843 1123 ntAPPRIS P1 BASIC17.62■□□□□ 0.41
HOXC11O43248 YWHAZ-204ENST00000395953 994 ntAPPRIS P1 TSL 5 BASIC17.62■□□□□ 0.41
HOXC11O43248 AC254562.1-201ENST00000417586 456 ntBASIC17.62■□□□□ 0.41
HOXC11O43248 PMS2P2-201ENST00000425039 1128 ntBASIC17.62■□□□□ 0.41
HOXC11O43248 AC006042.2-201ENST00000428660 568 ntTSL 4 BASIC17.62■□□□□ 0.41
HOXC11O43248 AL645941.2-201ENST00000429234 612 ntAPPRIS P1 TSL 2 BASIC17.62■□□□□ 0.41
HOXC11O43248 LINC01503-203ENST00000436710 901 ntTSL 3 BASIC17.62■□□□□ 0.41
HOXC11O43248 AC087163.2-201ENST00000457299 853 ntBASIC17.62■□□□□ 0.41
HOXC11O43248 AC074386.1-202ENST00000463561 864 ntBASIC17.62■□□□□ 0.41
HOXC11O43248 FBXL21-206ENST00000495672 589 ntTSL 4 BASIC17.62■□□□□ 0.41
HOXC11O43248 CFL1-202ENST00000524553 860 ntTSL 2 BASIC17.62■□□□□ 0.41
HOXC11O43248 ZEB1-AS1-206ENST00000606250 573 ntTSL 5 BASIC17.62■□□□□ 0.41
HOXC11O43248 SHKBP1-201ENST00000291842 2363 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
HOXC11O43248 FAM131A-207ENST00000450976 1335 ntTSL 3 BASIC17.62■□□□□ 0.41
HOXC11O43248 GPT-202ENST00000394955 1885 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
HOXC11O43248 CHST2-201ENST00000309575 4582 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
HOXC11O43248 RPRD1A-209ENST00000590898 1945 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
HOXC11O43248 CD2AP-201ENST00000359314 5412 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
HOXC11O43248 BMP2K-208ENST00000628286 3848 ntAPPRIS ALT2 TSL 5 BASIC17.62■□□□□ 0.41
HOXC11O43248 ALKBH3-201ENST00000302708 1474 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
HOXC11O43248 MCOLN1-201ENST00000264079 2082 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
HOXC11O43248 LYSMD4-203ENST00000378904 2122 ntBASIC17.62■□□□□ 0.41
HOXC11O43248 FAM53A-207ENST00000489363 2776 ntTSL 2 BASIC17.62■□□□□ 0.41
HOXC11O43248 AC068446.2-201ENST00000500487 2165 ntTSL 2 BASIC17.62■□□□□ 0.41
HOXC11O43248 SAR1B-208ENST00000507419 2287 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
HOXC11O43248 CORO6-210ENST00000580212 2345 ntTSL 5 BASIC17.61■□□□□ 0.41
HOXC11O43248 SOCS2-AS1-202ENST00000500986 1655 ntTSL 2 BASIC17.61■□□□□ 0.41
HOXC11O43248 CACNA1A-218ENST00000635895 8657 ntAPPRIS ALT2 TSL 5 BASIC17.61■□□□□ 0.41
HOXC11O43248 CACNA1A-257ENST00000638009 8665 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
HOXC11O43248 CORO1C-204ENST00000541050 2487 ntAPPRIS P1 TSL 2 BASIC17.61■□□□□ 0.41
HOXC11O43248 MOCS2-202ENST00000396954 1785 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
HOXC11O43248 NGFR-202ENST00000504201 1840 ntTSL 2 BASIC17.61■□□□□ 0.41
HOXC11O43248 IL17RC-201ENST00000295981 2621 ntAPPRIS P4 TSL 2 BASIC17.61■□□□□ 0.41
HOXC11O43248 APOA5-203ENST00000542499 1929 ntAPPRIS P1 TSL 5 BASIC17.61■□□□□ 0.41
HOXC11O43248 SHOX-204ENST00000554971 1902 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
HOXC11O43248 ZSCAN18-201ENST00000240727 2779 ntAPPRIS P3 TSL 1 (best) BASIC17.61■□□□□ 0.41
HOXC11O43248 ARSA-201ENST00000216124 2050 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
HOXC11O43248 NME9-203ENST00000383180 2133 ntTSL 2 BASIC17.61■□□□□ 0.41
HOXC11O43248 ABHD11-203ENST00000395147 812 ntTSL 3 BASIC17.61■□□□□ 0.41
HOXC11O43248 C1orf226-202ENST00000426197 1049 ntAPPRIS P3 TSL 2 BASIC17.61■□□□□ 0.41
HOXC11O43248 AP000695.1-201ENST00000429588 893 ntTSL 3 BASIC17.61■□□□□ 0.41
HOXC11O43248 SLC25A6P2-201ENST00000497974 877 ntBASIC17.61■□□□□ 0.41
HOXC11O43248 AC005606.1-201ENST00000567515 504 ntTSL 5 BASIC17.61■□□□□ 0.41
HOXC11O43248 AC130456.4-201ENST00000568635 665 ntTSL 2 BASIC17.61■□□□□ 0.41
HOXC11O43248 ACTL9-202ENST00000612068 1252 ntBASIC17.61■□□□□ 0.41
HOXC11O43248 SLC25A46-201ENST00000355943 2385 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
HOXC11O43248 SRSF1-201ENST00000258962 1513 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
HOXC11O43248 CHPF-203ENST00000535926 2634 ntTSL 2 BASIC17.61■□□□□ 0.41
HOXC11O43248 MICU3-201ENST00000318063 3992 ntAPPRIS P2 TSL 1 (best) BASIC17.61■□□□□ 0.41
HOXC11O43248 PAX1-205ENST00000613128 5352 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
HOXC11O43248 BBS5-202ENST00000392663 3107 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
HOXC11O43248 EWSR1-202ENST00000332035 1989 ntAPPRIS ALT2 TSL 2 BASIC17.6■□□□□ 0.41
HOXC11O43248 TCP11-201ENST00000244645 2018 ntAPPRIS P3 TSL 1 (best) BASIC17.6■□□□□ 0.41
HOXC11O43248 CHRND-201ENST00000258385 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
HOXC11O43248 ASB7-203ENST00000558747 2133 ntTSL 5 BASIC17.6■□□□□ 0.41
HOXC11O43248 TBXAS1-204ENST00000416849 2505 ntTSL 5 BASIC17.6■□□□□ 0.41
HOXC11O43248 SCYL1-203ENST00000420247 2583 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
HOXC11O43248 GRHPR-201ENST00000318158 1280 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
HOXC11O43248 CD82-202ENST00000342935 967 ntTSL 5 BASIC17.6■□□□□ 0.41
HOXC11O43248 KCNIP2-208ENST00000370046 923 ntTSL 5 BASIC17.6■□□□□ 0.41
HOXC11O43248 AMACR-204ENST00000382085 1195 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
HOXC11O43248 ANKRD54-202ENST00000406423 954 ntTSL 3 BASIC17.6■□□□□ 0.41
HOXC11O43248 ICAM2-202ENST00000418105 1252 ntAPPRIS P1 TSL 3 BASIC17.6■□□□□ 0.41
HOXC11O43248 AKIRIN1-203ENST00000446189 1243 ntTSL 2 BASIC17.6■□□□□ 0.41
HOXC11O43248 SLC26A4-AS1-202ENST00000449741 586 ntTSL 4 BASIC17.6■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 38.4 ms