Protein–RNA interactions for Protein: O15379

HDAC3, Histone deacetylase 3, humanhuman

Predictions only

Length 428 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3O15379 SCAP-201ENST00000265565 4394 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
HDAC3O15379 PACS1-201ENST00000320580 4392 ntAPPRIS P2 TSL 1 (best) BASIC16.95■□□□□ 0.3
HDAC3O15379 SLC25A22-201ENST00000320230 2796 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
HDAC3O15379 TCF3-212ENST00000588136 2658 ntAPPRIS ALT2 TSL 2 BASIC16.95■□□□□ 0.3
HDAC3O15379 CLDN4-201ENST00000340958 1831 ntAPPRIS P1 BASIC16.95■□□□□ 0.3
HDAC3O15379 PMS1-213ENST00000441310 3225 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
HDAC3O15379 KPNA2-202ENST00000537025 2456 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
HDAC3O15379 HOXC6-201ENST00000243108 1733 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
HDAC3O15379 RUSC1-214ENST00000490373 1700 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
HDAC3O15379 GGT6-203ENST00000573591 1730 ntTSL 4 BASIC16.95■□□□□ 0.3
HDAC3O15379 C12orf29-201ENST00000356891 2919 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
HDAC3O15379 PCDHGA12-202ENST00000613314 2634 ntAPPRIS ALT2 BASIC16.95■□□□□ 0.3
HDAC3O15379 POMC-204ENST00000405623 1426 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
HDAC3O15379 CLEC10A-204ENST00000571664 1442 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
HDAC3O15379 GABRB2-202ENST00000353437 1963 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
HDAC3O15379 LFNG-207ENST00000614382 1969 ntTSL 5 BASIC16.95■□□□□ 0.3
HDAC3O15379 CCDC120-202ENST00000496529 2415 ntAPPRIS P3 TSL 2 BASIC16.95■□□□□ 0.3
HDAC3O15379 CHAD-203ENST00000508540 1789 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
HDAC3O15379 CCNA2-201ENST00000274026 2797 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
HDAC3O15379 MAP3K20-203ENST00000409176 2572 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
HDAC3O15379 AEBP1-206ENST00000450684 2571 ntTSL 2 BASIC16.94■□□□□ 0.3
HDAC3O15379 PICALM-219ENST00000532317 3474 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
HDAC3O15379 STIM2-203ENST00000467011 3925 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
HDAC3O15379 KLK5-201ENST00000336334 1563 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
HDAC3O15379 C9orf43-202ENST00000374165 2049 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
HDAC3O15379 NCAPH2-205ENST00000420993 2037 ntAPPRIS P3 TSL 1 (best) BASIC16.94■□□□□ 0.3
HDAC3O15379 AC092068.3-201ENST00000587894 2016 ntBASIC16.94■□□□□ 0.3
HDAC3O15379 IL18BP-214ENST00000620017 1566 ntTSL 5 BASIC16.94■□□□□ 0.3
HDAC3O15379 PIGQ-201ENST00000026218 2846 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
HDAC3O15379 YAP1-208ENST00000531439 1490 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
HDAC3O15379 MYH14-203ENST00000425460 6811 ntAPPRIS P3 TSL 5 BASIC16.94■□□□□ 0.3
HDAC3O15379 NDRG4-202ENST00000356752 1375 ntTSL 2 BASIC16.94■□□□□ 0.3
HDAC3O15379 KCNK7-204ENST00000394217 1372 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
HDAC3O15379 RAPGEFL1-209ENST00000544503 2079 ntTSL 2 BASIC16.94■□□□□ 0.3
HDAC3O15379 GLDC-201ENST00000321612 3900 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
HDAC3O15379 TMEM65-201ENST00000297632 9029 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
HDAC3O15379 FAM19A3-201ENST00000361886 1056 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
HDAC3O15379 PLPP7-201ENST00000372261 972 ntTSL 2 BASIC16.94■□□□□ 0.3
HDAC3O15379 SFTPD-201ENST00000372292 1281 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
HDAC3O15379 TBC1D7-205ENST00000379307 1084 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
HDAC3O15379 ZMYM5-203ENST00000382907 1092 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
HDAC3O15379 IGHGP-201ENST00000390555 1178 ntBASIC16.94■□□□□ 0.3
HDAC3O15379 NDUFB2-203ENST00000461457 559 ntTSL 3 BASIC16.94■□□□□ 0.3
HDAC3O15379 AC044860.1-201ENST00000560756 1160 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
HDAC3O15379 C16orf74-203ENST00000602675 744 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
HDAC3O15379 AL138966.2-201ENST00000621997 464 ntBASIC16.94■□□□□ 0.3
HDAC3O15379 VAV3-210ENST00000527011 4510 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
HDAC3O15379 TNKS-211ENST00000520408 1964 ntTSL 2 BASIC16.94■□□□□ 0.3
HDAC3O15379 CXXC1-201ENST00000285106 2936 ntAPPRIS P3 TSL 1 (best) BASIC16.94■□□□□ 0.3
HDAC3O15379 NUP50-202ENST00000396096 1895 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
HDAC3O15379 FAM9A-202ENST00000543214 1544 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
HDAC3O15379 TBC1D3P5-201ENST00000579401 1545 ntBASIC16.94■□□□□ 0.3
HDAC3O15379 ORAI2-205ENST00000478730 5531 ntAPPRIS P1 TSL 2 BASIC16.94■□□□□ 0.3
HDAC3O15379 TXNDC11-202ENST00000356957 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
HDAC3O15379 TRIM73-205ENST00000450434 1425 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
HDAC3O15379 TTC8-216ENST00000614125 2377 ntTSL 5 BASIC16.94■□□□□ 0.3
HDAC3O15379 NODAL-201ENST00000287139 1665 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
HDAC3O15379 ZBED3-AS1-208ENST00000512001 1668 ntTSL 3 BASIC16.94■□□□□ 0.3
HDAC3O15379 SUSD4-202ENST00000343846 3480 ntAPPRIS P1 TSL 2 BASIC16.94■□□□□ 0.3
HDAC3O15379 VSTM2A-204ENST00000407838 3112 ntAPPRIS P1 TSL 3 BASIC16.94■□□□□ 0.3
HDAC3O15379 TRIM36-202ENST00000379617 1322 ntTSL 2 BASIC16.94■□□□□ 0.3
HDAC3O15379 IGF2-207ENST00000434045 1583 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
HDAC3O15379 GPR158-AS1-201ENST00000449643 2433 ntTSL 2 BASIC16.94■□□□□ 0.3
HDAC3O15379 SBNO2-204ENST00000587024 4861 ntAPPRIS ALT2 TSL 2 BASIC16.93■□□□□ 0.3
HDAC3O15379 MAPK8IP1-202ENST00000395629 3180 ntTSL 5 BASIC16.93■□□□□ 0.3
HDAC3O15379 PHYH-202ENST00000396913 1732 ntTSL 5 BASIC16.93■□□□□ 0.3
HDAC3O15379 PWP1-202ENST00000541166 1722 ntTSL 2 BASIC16.93■□□□□ 0.3
HDAC3O15379 LETM2-205ENST00000519476 2240 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
HDAC3O15379 GLOD4-203ENST00000536578 2497 ntTSL 5 BASIC16.93■□□□□ 0.3
HDAC3O15379 HDAC8-206ENST00000373571 2133 ntTSL 5 BASIC16.93■□□□□ 0.3
HDAC3O15379 AL353692.3-201ENST00000407031 1396 ntBASIC16.93■□□□□ 0.3
HDAC3O15379 PHRF1-201ENST00000264555 5523 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
HDAC3O15379 SLC44A3-207ENST00000529450 2045 ntTSL 2 BASIC16.93■□□□□ 0.3
HDAC3O15379 ACSF3-202ENST00000378345 1541 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
HDAC3O15379 AC092171.3-201ENST00000610122 2651 ntBASIC16.93■□□□□ 0.3
HDAC3O15379 VKORC1-202ENST00000319788 1077 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
HDAC3O15379 GSTO2-201ENST00000338595 1179 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
HDAC3O15379 DHRS4L2-202ENST00000397071 1117 ntTSL 2 BASIC16.93■□□□□ 0.3
HDAC3O15379 DARS-AS1-202ENST00000419808 772 ntTSL 5 BASIC16.93■□□□□ 0.3
HDAC3O15379 AC093585.1-201ENST00000425183 428 ntTSL 2 BASIC16.93■□□□□ 0.3
HDAC3O15379 MNX1-AS1-201ENST00000480284 1041 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
HDAC3O15379 AC098829.1-201ENST00000502344 630 ntTSL 3 BASIC16.93■□□□□ 0.3
HDAC3O15379 AC012645.3-201ENST00000568506 470 ntTSL 3 BASIC16.93■□□□□ 0.3
HDAC3O15379 MALAT1-215ENST00000619449 794 ntTSL 3 BASIC16.93■□□□□ 0.3
HDAC3O15379 LRRC23-215ENST00000622489 1061 ntTSL 5 BASIC16.93■□□□□ 0.3
HDAC3O15379 SLC3A2-203ENST00000377890 2161 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
HDAC3O15379 PRX-202ENST00000324001 4855 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
HDAC3O15379 HSPA1A-202ENST00000608703 1909 ntTSL 2 BASIC16.93■□□□□ 0.3
HDAC3O15379 KRAS-203ENST00000556131 1696 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
HDAC3O15379 PPP1R3E-201ENST00000452015 4773 ntAPPRIS P1 TSL 2 BASIC16.93■□□□□ 0.3
HDAC3O15379 RPN1-201ENST00000296255 2314 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
HDAC3O15379 VGLL4-210ENST00000426568 1428 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
HDAC3O15379 AC010460.3-201ENST00000511359 1579 ntBASIC16.93■□□□□ 0.3
HDAC3O15379 SAP130-202ENST00000259235 4065 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
HDAC3O15379 SULT1A2-204ENST00000533150 1991 ntTSL 2 BASIC16.93■□□□□ 0.3
HDAC3O15379 MAGEA6-201ENST00000329342 1740 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
HDAC3O15379 MAGEA3-201ENST00000370278 1724 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
HDAC3O15379 FBXO21-201ENST00000330622 2906 ntAPPRIS P3 TSL 1 (best) BASIC16.93■□□□□ 0.3
HDAC3O15379 PTK7-202ENST00000230419 4272 ntAPPRIS P3 TSL 1 (best) BASIC16.93■□□□□ 0.3
HDAC3O15379 AQP10-203ENST00000484864 2262 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 39.1 ms