Protein–RNA interactions for Protein: E9PGA6

C1QTNF3-AMACR, C1QTNF3-AMACR readthrough (NMD candidate), humanhuman

Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
C1QTNF3-AMACRE9PGA6 ZGLP1-201ENST00000403352 1028 ntAPPRIS ALT2 TSL 5 BASIC17.39■□□□□ 0.37
C1QTNF3-AMACRE9PGA6 LINC01972-201ENST00000422271 553 ntTSL 3 BASIC17.39■□□□□ 0.37
C1QTNF3-AMACRE9PGA6 AC097532.1-201ENST00000440802 322 ntTSL 2 BASIC17.39■□□□□ 0.37
C1QTNF3-AMACRE9PGA6 DHRS12-203ENST00000444610 1162 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
C1QTNF3-AMACRE9PGA6 RIN3-211ENST00000557762 517 ntTSL 3 BASIC17.39■□□□□ 0.37
C1QTNF3-AMACRE9PGA6 DCTPP1-203ENST00000567983 801 ntTSL 5 BASIC17.39■□□□□ 0.37
C1QTNF3-AMACRE9PGA6 SNHG15-206ENST00000580528 1073 ntTSL 2 BASIC17.39■□□□□ 0.37
C1QTNF3-AMACRE9PGA6 AC007193.2-201ENST00000596807 472 ntTSL 3 BASIC17.39■□□□□ 0.37
C1QTNF3-AMACRE9PGA6 TEX264-216ENST00000614067 1174 ntAPPRIS ALT2 TSL 3 BASIC17.39■□□□□ 0.37
C1QTNF3-AMACRE9PGA6 C1QL3-202ENST00000619991 783 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
C1QTNF3-AMACRE9PGA6 INTS10-201ENST00000397977 2804 ntAPPRIS P1 TSL 2 BASIC17.39■□□□□ 0.37
C1QTNF3-AMACRE9PGA6 PXK-206ENST00000463280 2825 ntTSL 2 BASIC17.39■□□□□ 0.37
C1QTNF3-AMACRE9PGA6 APP-203ENST00000354192 3167 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
C1QTNF3-AMACRE9PGA6 AL590787.1-201ENST00000568856 1315 ntBASIC17.39■□□□□ 0.37
C1QTNF3-AMACRE9PGA6 EIF4A1-203ENST00000577269 1319 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
C1QTNF3-AMACRE9PGA6 POLR3D-201ENST00000306433 1931 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
C1QTNF3-AMACRE9PGA6 LMNA-207ENST00000368301 2461 ntTSL 2 BASIC17.39■□□□□ 0.37
C1QTNF3-AMACRE9PGA6 AC093627.6-201ENST00000478759 1365 ntTSL 5 BASIC17.39■□□□□ 0.37
C1QTNF3-AMACRE9PGA6 THAP3-201ENST00000054650 1366 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
C1QTNF3-AMACRE9PGA6 HCK-210ENST00000629881 1969 ntAPPRIS ALT2 TSL 2 BASIC17.39■□□□□ 0.37
C1QTNF3-AMACRE9PGA6 RAI1-201ENST00000353383 7662 ntAPPRIS P2 TSL 1 (best) BASIC17.38■□□□□ 0.37
C1QTNF3-AMACRE9PGA6 DMKN-209ENST00000429837 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
C1QTNF3-AMACRE9PGA6 HOXC6-201ENST00000243108 1733 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
C1QTNF3-AMACRE9PGA6 CYP2D6-204ENST00000389970 1714 ntTSL 5 BASIC17.38■□□□□ 0.37
C1QTNF3-AMACRE9PGA6 TFAP2D-201ENST00000008391 1711 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
C1QTNF3-AMACRE9PGA6 GCAT-201ENST00000248924 1497 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
C1QTNF3-AMACRE9PGA6 GPX3-209ENST00000614343 1478 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
C1QTNF3-AMACRE9PGA6 CFAP100-201ENST00000352312 2086 ntAPPRIS P2 TSL 2 BASIC17.38■□□□□ 0.37
C1QTNF3-AMACRE9PGA6 RNF146-213ENST00000610153 2070 ntAPPRIS ALT1 TSL 2 BASIC17.38■□□□□ 0.37
C1QTNF3-AMACRE9PGA6 FKBP10-201ENST00000321562 2662 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
C1QTNF3-AMACRE9PGA6 PDE1C-206ENST00000396193 5109 ntAPPRIS P4 TSL 2 BASIC17.38■□□□□ 0.37
C1QTNF3-AMACRE9PGA6 CTSA-204ENST00000372484 2149 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
C1QTNF3-AMACRE9PGA6 PDE3B-201ENST00000282096 6076 ntAPPRIS P2 TSL 1 (best) BASIC17.38■□□□□ 0.37
C1QTNF3-AMACRE9PGA6 PUF60-201ENST00000313352 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC17.38■□□□□ 0.37
C1QTNF3-AMACRE9PGA6 KCNJ10-208ENST00000639408 1546 ntTSL 5 BASIC17.38■□□□□ 0.37
C1QTNF3-AMACRE9PGA6 TH-205ENST00000381175 1898 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
C1QTNF3-AMACRE9PGA6 MPP2-206ENST00000518766 1896 ntTSL 2 BASIC17.38■□□□□ 0.37
C1QTNF3-AMACRE9PGA6 LYSMD4-201ENST00000332728 2847 ntTSL 4 BASIC17.38■□□□□ 0.37
C1QTNF3-AMACRE9PGA6 ZBTB10-205ENST00000610895 2833 ntAPPRIS ALT2 TSL 2 BASIC17.38■□□□□ 0.37
C1QTNF3-AMACRE9PGA6 TSTD1-203ENST00000368024 457 ntTSL 2 BASIC17.38■□□□□ 0.37
C1QTNF3-AMACRE9PGA6 PAXX-201ENST00000371620 812 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
C1QTNF3-AMACRE9PGA6 HUS1B-201ENST00000380907 1025 ntAPPRIS P1 BASIC17.38■□□□□ 0.37
C1QTNF3-AMACRE9PGA6 ATP5G3-202ENST00000392541 842 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
C1QTNF3-AMACRE9PGA6 SCRN1-203ENST00000409570 535 ntTSL 4 BASIC17.38■□□□□ 0.37
C1QTNF3-AMACRE9PGA6 HNRNPA1P28-201ENST00000424481 961 ntBASIC17.38■□□□□ 0.37
C1QTNF3-AMACRE9PGA6 PRR29-203ENST00000425164 1266 ntTSL 2 BASIC17.38■□□□□ 0.37
C1QTNF3-AMACRE9PGA6 MOK-203ENST00000517966 1230 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
C1QTNF3-AMACRE9PGA6 OAZ1-202ENST00000582888 969 ntAPPRIS ALT1 TSL 5 BASIC17.38■□□□□ 0.37
C1QTNF3-AMACRE9PGA6 AC139530.3-201ENST00000620344 690 ntBASIC17.38■□□□□ 0.37
C1QTNF3-AMACRE9PGA6 LZTS2-202ENST00000370223 2883 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
C1QTNF3-AMACRE9PGA6 STMN4-202ENST00000350889 2288 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
C1QTNF3-AMACRE9PGA6 NKIRAS1-202ENST00000412028 1605 ntAPPRIS ALT1 TSL 5 BASIC17.38■□□□□ 0.37
C1QTNF3-AMACRE9PGA6 MED25-202ENST00000538643 1623 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
C1QTNF3-AMACRE9PGA6 C19orf48-202ENST00000391812 1666 ntAPPRIS P1 TSL 2 BASIC17.38■□□□□ 0.37
C1QTNF3-AMACRE9PGA6 AC133963.1-201ENST00000504166 1679 ntBASIC17.38■□□□□ 0.37
C1QTNF3-AMACRE9PGA6 LONRF1-208ENST00000533751 3043 ntTSL 5 BASIC17.38■□□□□ 0.37
C1QTNF3-AMACRE9PGA6 NLGN2-204ENST00000575301 4374 ntAPPRIS P1 TSL 5 BASIC17.38■□□□□ 0.37
C1QTNF3-AMACRE9PGA6 CD276-201ENST00000318424 2738 ntTSL 5 BASIC17.38■□□□□ 0.37
C1QTNF3-AMACRE9PGA6 RGS12-203ENST00000344733 5469 ntAPPRIS P4 TSL 1 (best) BASIC17.38■□□□□ 0.37
C1QTNF3-AMACRE9PGA6 NDRG4-202ENST00000356752 1375 ntTSL 2 BASIC17.38■□□□□ 0.37
C1QTNF3-AMACRE9PGA6 MEN1-203ENST00000337652 3162 ntAPPRIS P3 TSL 5 BASIC17.38■□□□□ 0.37
C1QTNF3-AMACRE9PGA6 DIAPH1-201ENST00000253811 5789 ntAPPRIS ALT2 TSL 5 BASIC17.38■□□□□ 0.37
C1QTNF3-AMACRE9PGA6 DIAPH1-202ENST00000389054 5795 ntAPPRIS P4 TSL 5 BASIC17.38■□□□□ 0.37
C1QTNF3-AMACRE9PGA6 DIAPH1-204ENST00000398557 5789 ntAPPRIS ALT2 TSL 5 BASIC17.38■□□□□ 0.37
C1QTNF3-AMACRE9PGA6 LENG8-202ENST00000376514 5146 ntAPPRIS ALT2 TSL 5 BASIC17.37■□□□□ 0.37
C1QTNF3-AMACRE9PGA6 APEH-202ENST00000438011 2249 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
C1QTNF3-AMACRE9PGA6 ELOA3-201ENST00000330682 1877 ntAPPRIS P1 BASIC17.37■□□□□ 0.37
C1QTNF3-AMACRE9PGA6 HLA-A-204ENST00000396634 1868 ntAPPRIS P1 BASIC17.37■□□□□ 0.37
C1QTNF3-AMACRE9PGA6 C16orf59-204ENST00000563531 1864 ntAPPRIS ALT2 TSL 5 BASIC17.37■□□□□ 0.37
C1QTNF3-AMACRE9PGA6 CACNA1B-205ENST00000371363 9758 ntAPPRIS ALT2 TSL 5 BASIC17.37■□□□□ 0.37
C1QTNF3-AMACRE9PGA6 SYTL3-201ENST00000297239 2292 ntAPPRIS ALT1 TSL 1 (best) BASIC17.37■□□□□ 0.37
C1QTNF3-AMACRE9PGA6 HMBS-203ENST00000442944 1548 ntTSL 5 BASIC17.37■□□□□ 0.37
C1QTNF3-AMACRE9PGA6 C12orf65-202ENST00000366329 1901 ntAPPRIS P2 TSL 2 BASIC17.37■□□□□ 0.37
C1QTNF3-AMACRE9PGA6 APOA5-203ENST00000542499 1929 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
C1QTNF3-AMACRE9PGA6 GOLPH3-201ENST00000265070 2721 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
C1QTNF3-AMACRE9PGA6 ARHGEF28-212ENST00000513042 6273 ntAPPRIS ALT2 TSL 5 BASIC17.37■□□□□ 0.37
C1QTNF3-AMACRE9PGA6 PHYHD1-201ENST00000308941 1599 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
C1QTNF3-AMACRE9PGA6 ZNF280D-205ENST00000559000 4726 ntAPPRIS ALT2 TSL 2 BASIC17.37■□□□□ 0.37
C1QTNF3-AMACRE9PGA6 FOXP1-210ENST00000484350 1996 ntTSL 2 BASIC17.37■□□□□ 0.37
C1QTNF3-AMACRE9PGA6 C9orf64-203ENST00000376344 2443 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
C1QTNF3-AMACRE9PGA6 CD40-201ENST00000372276 1623 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
C1QTNF3-AMACRE9PGA6 NTRK1-201ENST00000358660 2492 ntAPPRIS ALT2 TSL 2 BASIC17.37■□□□□ 0.37
C1QTNF3-AMACRE9PGA6 ADRA1A-205ENST00000380582 2089 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
C1QTNF3-AMACRE9PGA6 TNFAIP1-202ENST00000544907 1656 ntTSL 2 BASIC17.37■□□□□ 0.37
C1QTNF3-AMACRE9PGA6 RELL2-201ENST00000297164 2520 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
C1QTNF3-AMACRE9PGA6 ELOF1-201ENST00000252445 1019 ntAPPRIS P1 TSL 2 BASIC17.37■□□□□ 0.37
C1QTNF3-AMACRE9PGA6 TRA2B-202ENST00000342294 288 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
C1QTNF3-AMACRE9PGA6 DNAJC4-203ENST00000355040 759 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
C1QTNF3-AMACRE9PGA6 LYSMD4-203ENST00000378904 2122 ntBASIC17.37■□□□□ 0.37
C1QTNF3-AMACRE9PGA6 PMP22-202ENST00000395936 816 ntTSL 3 BASIC17.37■□□□□ 0.37
C1QTNF3-AMACRE9PGA6 AP1S3-203ENST00000396654 830 ntAPPRIS P2 TSL 2 BASIC17.37■□□□□ 0.37
C1QTNF3-AMACRE9PGA6 AC004832.2-201ENST00000426397 482 ntBASIC17.37■□□□□ 0.37
C1QTNF3-AMACRE9PGA6 HCG4B-203ENST00000450128 991 ntBASIC17.37■□□□□ 0.37
C1QTNF3-AMACRE9PGA6 CR559946.1-201ENST00000453835 531 ntTSL 4 BASIC17.37■□□□□ 0.37
C1QTNF3-AMACRE9PGA6 AC107464.1-203ENST00000468356 2120 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
C1QTNF3-AMACRE9PGA6 TMUB1-204ENST00000476627 882 ntAPPRIS P1 TSL 3 BASIC17.37■□□□□ 0.37
C1QTNF3-AMACRE9PGA6 BX890604.1-208ENST00000490920 726 ntTSL 2 BASIC17.37■□□□□ 0.37
C1QTNF3-AMACRE9PGA6 AP000763.4-201ENST00000544674 752 ntTSL 5 BASIC17.37■□□□□ 0.37
C1QTNF3-AMACRE9PGA6 PAX9-204ENST00000554201 1289 ntTSL 2 BASIC17.37■□□□□ 0.37
C1QTNF3-AMACRE9PGA6 TUBB3-205ENST00000554336 903 ntTSL 3 BASIC17.37■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 51.9 ms