Protein–RNA interactions for Protein: A0A1B0GU29

SMIM28, Small integral membrane protein 28, humanhuman

Predictions only

Length 152 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMIM28A0A1B0GU29 NRG2-205ENST00000361474 3020 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
SMIM28A0A1B0GU29 REEP1-208ENST00000538924 1702 ntTSL 5 BASIC18.57■□□□□ 0.56
SMIM28A0A1B0GU29 SLC35F5-201ENST00000245680 4412 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
SMIM28A0A1B0GU29 GCDH-201ENST00000222214 1956 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
SMIM28A0A1B0GU29 AC068880.1-201ENST00000507289 2297 ntBASIC18.57■□□□□ 0.56
SMIM28A0A1B0GU29 GOLGA2P7-201ENST00000316967 2525 ntTSL 2 BASIC18.57■□□□□ 0.56
SMIM28A0A1B0GU29 THEG-201ENST00000342640 1877 ntAPPRIS P4 TSL 1 (best) BASIC18.57■□□□□ 0.56
SMIM28A0A1B0GU29 TRA2B-202ENST00000342294 288 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
SMIM28A0A1B0GU29 YBX2P1-201ENST00000394192 760 ntBASIC18.57■□□□□ 0.56
SMIM28A0A1B0GU29 SCRN1-203ENST00000409570 535 ntTSL 4 BASIC18.57■□□□□ 0.56
SMIM28A0A1B0GU29 AL365226.1-201ENST00000448363 349 ntTSL 2 BASIC18.57■□□□□ 0.56
SMIM28A0A1B0GU29 PAWRP1-201ENST00000451083 565 ntBASIC18.57■□□□□ 0.56
SMIM28A0A1B0GU29 MOK-203ENST00000517966 1230 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
SMIM28A0A1B0GU29 TRAF3IP2-AS1-208ENST00000525151 609 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
SMIM28A0A1B0GU29 POLD4-207ENST00000531239 584 ntTSL 2 BASIC18.57■□□□□ 0.56
SMIM28A0A1B0GU29 HAGH-208ENST00000566709 1291 ntTSL 5 BASIC18.57■□□□□ 0.56
SMIM28A0A1B0GU29 TEAD2-204ENST00000593945 2141 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
SMIM28A0A1B0GU29 AC007193.2-201ENST00000596807 472 ntTSL 3 BASIC18.57■□□□□ 0.56
SMIM28A0A1B0GU29 AC139530.3-201ENST00000620344 690 ntBASIC18.57■□□□□ 0.56
SMIM28A0A1B0GU29 CLDN4-201ENST00000340958 1831 ntAPPRIS P1 BASIC18.57■□□□□ 0.56
SMIM28A0A1B0GU29 LRCH2-202ENST00000538422 4868 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
SMIM28A0A1B0GU29 AUTS2-201ENST00000342771 6173 ntAPPRIS P3 TSL 1 (best) BASIC18.57■□□□□ 0.56
SMIM28A0A1B0GU29 RIC8A-208ENST00000527696 2565 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
SMIM28A0A1B0GU29 TSPAN7-202ENST00000378482 1909 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
SMIM28A0A1B0GU29 SPAST-203ENST00000615843 5212 ntAPPRIS P4 TSL 1 (best) BASIC18.57■□□□□ 0.56
SMIM28A0A1B0GU29 CBX2-202ENST00000310942 4644 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
SMIM28A0A1B0GU29 C1QTNF1-201ENST00000311661 2624 ntTSL 2 BASIC18.56■□□□□ 0.56
SMIM28A0A1B0GU29 PCDHA2-203ENST00000526136 5254 ntAPPRIS P2 TSL 1 (best) BASIC18.56■□□□□ 0.56
SMIM28A0A1B0GU29 ZNF211-203ENST00000299871 2577 ntAPPRIS ALT2 TSL 3 BASIC18.56■□□□□ 0.56
SMIM28A0A1B0GU29 RTKN2-203ENST00000395260 2076 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
SMIM28A0A1B0GU29 HHATL-201ENST00000310417 1750 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
SMIM28A0A1B0GU29 SEPT4-201ENST00000317256 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
SMIM28A0A1B0GU29 SUPT20H-202ENST00000356185 2681 ntAPPRIS P3 TSL 1 (best) BASIC18.56■□□□□ 0.56
SMIM28A0A1B0GU29 HELT-201ENST00000338875 1008 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
SMIM28A0A1B0GU29 HLA-DMA-201ENST00000374843 1123 ntAPPRIS P1 BASIC18.56■□□□□ 0.56
SMIM28A0A1B0GU29 HIST1H2BL-201ENST00000377401 488 ntAPPRIS P1 BASIC18.56■□□□□ 0.56
SMIM28A0A1B0GU29 ATP6V0CP3-201ENST00000417255 467 ntBASIC18.56■□□□□ 0.56
SMIM28A0A1B0GU29 HNRNPA1P28-201ENST00000424481 961 ntBASIC18.56■□□□□ 0.56
SMIM28A0A1B0GU29 AC004832.2-201ENST00000426397 482 ntBASIC18.56■□□□□ 0.56
SMIM28A0A1B0GU29 AL645941.2-201ENST00000429234 612 ntAPPRIS P1 TSL 2 BASIC18.56■□□□□ 0.56
SMIM28A0A1B0GU29 TMUB1-204ENST00000476627 882 ntAPPRIS P1 TSL 3 BASIC18.56■□□□□ 0.56
SMIM28A0A1B0GU29 KRT73-AS1-202ENST00000551089 563 ntTSL 4 BASIC18.56■□□□□ 0.56
SMIM28A0A1B0GU29 LINC00596-201ENST00000559615 937 ntTSL 5 BASIC18.56■□□□□ 0.56
SMIM28A0A1B0GU29 AP005233.2-201ENST00000561588 372 ntTSL 3 BASIC18.56■□□□□ 0.56
SMIM28A0A1B0GU29 AC018845.2-201ENST00000568326 409 ntBASIC18.56■□□□□ 0.56
SMIM28A0A1B0GU29 AC008403.2-204ENST00000600650 1006 ntTSL 3 BASIC18.56■□□□□ 0.56
SMIM28A0A1B0GU29 MAGIX-204ENST00000614074 778 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
SMIM28A0A1B0GU29 LINC01635-202ENST00000635097 1023 ntTSL 5 BASIC18.56■□□□□ 0.56
SMIM28A0A1B0GU29 BEST2-202ENST00000549706 2183 ntAPPRIS P1 TSL 5 BASIC18.56■□□□□ 0.56
SMIM28A0A1B0GU29 AL133373.2-201ENST00000623187 2828 ntBASIC18.56■□□□□ 0.56
SMIM28A0A1B0GU29 GRIN3B-201ENST00000234389 3281 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
SMIM28A0A1B0GU29 NOMO1-201ENST00000287667 4355 ntAPPRIS P2 TSL 1 (best) BASIC18.56■□□□□ 0.56
SMIM28A0A1B0GU29 AC067852.2-201ENST00000590513 2313 ntBASIC18.56■□□□□ 0.56
SMIM28A0A1B0GU29 LARGE2-208ENST00000531526 2528 ntAPPRIS P3 TSL 2 BASIC18.56■□□□□ 0.56
SMIM28A0A1B0GU29 RAB3IP-202ENST00000362025 2055 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
SMIM28A0A1B0GU29 CPEB2-AS1-201ENST00000500394 1630 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
SMIM28A0A1B0GU29 PRPF39-201ENST00000355765 2868 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
SMIM28A0A1B0GU29 COBLL1-201ENST00000342193 4898 ntAPPRIS P3 TSL 1 (best) BASIC18.55■□□□□ 0.56
SMIM28A0A1B0GU29 PPM1M-202ENST00000323588 2193 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
SMIM28A0A1B0GU29 UBE2Q2-208ENST00000569423 2969 ntTSL 2 BASIC18.55■□□□□ 0.56
SMIM28A0A1B0GU29 ZNF205-206ENST00000620094 2309 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
SMIM28A0A1B0GU29 PIGZ-202ENST00000412723 2701 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
SMIM28A0A1B0GU29 NOP14-204ENST00000502735 2723 ntAPPRIS ALT2 TSL 5 BASIC18.55■□□□□ 0.56
SMIM28A0A1B0GU29 NR4A2-204ENST00000409572 2878 ntAPPRIS P1 TSL 5 BASIC18.55■□□□□ 0.56
SMIM28A0A1B0GU29 ZNF274-202ENST00000345813 2678 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
SMIM28A0A1B0GU29 TPR-209ENST00000613151 2478 ntTSL 5 BASIC18.55■□□□□ 0.56
SMIM28A0A1B0GU29 POLR1D-221ENST00000637180 2262 ntTSL 5 BASIC18.55■□□□□ 0.56
SMIM28A0A1B0GU29 TINF2-201ENST00000267415 1852 ntAPPRIS P4 TSL 1 (best) BASIC18.55■□□□□ 0.56
SMIM28A0A1B0GU29 HUS1B-201ENST00000380907 1025 ntAPPRIS P1 BASIC18.55■□□□□ 0.56
SMIM28A0A1B0GU29 AC131097.3-202ENST00000439270 331 ntTSL 5 BASIC18.55■□□□□ 0.56
SMIM28A0A1B0GU29 AC002347.1-201ENST00000569543 541 ntBASIC18.55■□□□□ 0.56
SMIM28A0A1B0GU29 AC092865.6-201ENST00000642101 219 ntBASIC18.55■□□□□ 0.56
SMIM28A0A1B0GU29 NFKB2-201ENST00000189444 3011 ntAPPRIS ALT1 TSL 1 (best) BASIC18.55■□□□□ 0.56
SMIM28A0A1B0GU29 CBX3P2-201ENST00000579647 1429 ntTSL 2 BASIC18.55■□□□□ 0.56
SMIM28A0A1B0GU29 SF1-203ENST00000377387 2947 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
SMIM28A0A1B0GU29 FST-202ENST00000396947 2538 ntTSL 5 BASIC18.55■□□□□ 0.56
SMIM28A0A1B0GU29 FMO5-208ENST00000578284 1784 ntTSL 5 BASIC18.55■□□□□ 0.56
SMIM28A0A1B0GU29 SDHA-213ENST00000510361 2148 ntTSL 2 BASIC18.55■□□□□ 0.56
SMIM28A0A1B0GU29 ZNF133-212ENST00000622607 2660 ntAPPRIS ALT2 TSL 4 BASIC18.55■□□□□ 0.56
SMIM28A0A1B0GU29 EFR3A-201ENST00000254624 5438 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
SMIM28A0A1B0GU29 SYCE1-203ENST00000368517 1377 ntAPPRIS P3 TSL 5 BASIC18.55■□□□□ 0.56
SMIM28A0A1B0GU29 SEC14L2-215ENST00000617837 2632 ntTSL 2 BASIC18.54■□□□□ 0.56
SMIM28A0A1B0GU29 ISLR2-210ENST00000565540 2780 ntAPPRIS P1 TSL 4 BASIC18.54■□□□□ 0.56
SMIM28A0A1B0GU29 AEBP2-201ENST00000266508 3620 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
SMIM28A0A1B0GU29 RAB43-201ENST00000315150 4467 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
SMIM28A0A1B0GU29 ALKBH3-201ENST00000302708 1474 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
SMIM28A0A1B0GU29 PKD1L2-209ENST00000531391 1488 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
SMIM28A0A1B0GU29 PTPDC1-202ENST00000375360 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
SMIM28A0A1B0GU29 FGFBP2-201ENST00000259989 1168 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
SMIM28A0A1B0GU29 CGREF1-201ENST00000260595 1177 ntAPPRIS ALT2 TSL 5 BASIC18.54■□□□□ 0.56
SMIM28A0A1B0GU29 THAP7-202ENST00000399133 1144 ntAPPRIS P1 TSL 2 BASIC18.54■□□□□ 0.56
SMIM28A0A1B0GU29 SNHG11-205ENST00000421599 1046 ntTSL 3 BASIC18.54■□□□□ 0.56
SMIM28A0A1B0GU29 EEF1D-223ENST00000528610 923 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
SMIM28A0A1B0GU29 AP000763.4-201ENST00000544674 752 ntTSL 5 BASIC18.54■□□□□ 0.56
SMIM28A0A1B0GU29 COX5A-206ENST00000568783 571 ntTSL 3 BASIC18.54■□□□□ 0.56
SMIM28A0A1B0GU29 TMEM59L-205ENST00000600490 1717 ntAPPRIS P1 TSL 5 BASIC18.54■□□□□ 0.56
SMIM28A0A1B0GU29 LEMD2-214ENST00000614475 2883 ntAPPRIS P1 TSL 5 BASIC18.54■□□□□ 0.56
SMIM28A0A1B0GU29 CYP2W1-202ENST00000340150 2361 ntTSL 2 BASIC18.54■□□□□ 0.56
SMIM28A0A1B0GU29 FN1-208ENST00000426059 2388 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
SMIM28A0A1B0GU29 MSL1-202ENST00000398532 4707 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 26.4 ms