Protein–RNA interactions for Protein: A0A096LP49

CCDC187, Coiled-coil domain-containing protein 187, humanhuman

Predictions only

Length 1,063 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC187A0A096LP49 HTR1A-201ENST00000323865 1778 ntAPPRIS P1 BASIC16.4■□□□□ 0.22
CCDC187A0A096LP49 BTNL9-202ENST00000376841 1626 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
CCDC187A0A096LP49 PLEKHB2-204ENST00000409158 2277 ntTSL 2 BASIC16.4■□□□□ 0.22
CCDC187A0A096LP49 AC092919.2-201ENST00000623631 1645 ntBASIC16.4■□□□□ 0.22
CCDC187A0A096LP49 AC129492.6-201ENST00000611383 1305 ntBASIC16.4■□□□□ 0.22
CCDC187A0A096LP49 ZFAND6-201ENST00000261749 1814 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CCDC187A0A096LP49 TMEM250-201ENST00000418388 2823 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CCDC187A0A096LP49 DPYSL3-202ENST00000398514 5309 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CCDC187A0A096LP49 STK10-201ENST00000176763 6060 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CCDC187A0A096LP49 ESR2-201ENST00000267525 1518 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
CCDC187A0A096LP49 KLHL33-202ENST00000636854 2394 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
CCDC187A0A096LP49 SPTBN4-204ENST00000392025 8671 ntAPPRIS ALT1 TSL 5 BASIC16.4■□□□□ 0.22
CCDC187A0A096LP49 PODN-203ENST00000395871 2744 ntTSL 5 BASIC16.39■□□□□ 0.22
CCDC187A0A096LP49 FBXO41-205ENST00000521871 7336 ntAPPRIS P1 TSL 5 BASIC16.39■□□□□ 0.22
CCDC187A0A096LP49 BIRC7-201ENST00000217169 1368 ntAPPRIS P4 TSL 1 (best) BASIC16.39■□□□□ 0.21
CCDC187A0A096LP49 TFAP2D-201ENST00000008391 1711 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CCDC187A0A096LP49 BAIAP2-204ENST00000428708 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
CCDC187A0A096LP49 KLHDC3-201ENST00000244670 1903 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
CCDC187A0A096LP49 KRT6C-201ENST00000252250 2289 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CCDC187A0A096LP49 KRT6B-201ENST00000252252 2282 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CCDC187A0A096LP49 COBL-202ENST00000395540 2332 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
CCDC187A0A096LP49 RGN-202ENST00000352078 1611 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CCDC187A0A096LP49 COL18A1-204ENST00000400337 5436 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
CCDC187A0A096LP49 STRADB-202ENST00000392249 2190 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
CCDC187A0A096LP49 DCLK2-207ENST00000635524 2153 ntAPPRIS ALT2 TSL 5 BASIC16.39■□□□□ 0.21
CCDC187A0A096LP49 EMX2-201ENST00000442245 2710 ntTSL 2 BASIC16.39■□□□□ 0.21
CCDC187A0A096LP49 RPS27A-201ENST00000272317 1071 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CCDC187A0A096LP49 SIVA1-202ENST00000347067 550 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
CCDC187A0A096LP49 TIMM8BP1-201ENST00000452384 211 ntBASIC16.39■□□□□ 0.21
CCDC187A0A096LP49 AC018730.1-201ENST00000454183 327 ntTSL 3 BASIC16.39■□□□□ 0.21
CCDC187A0A096LP49 PTGES3-205ENST00000456859 957 ntTSL 2 BASIC16.39■□□□□ 0.21
CCDC187A0A096LP49 AC109322.1-201ENST00000524499 1264 ntBASIC16.39■□□□□ 0.21
CCDC187A0A096LP49 AL110118.2-203ENST00000557574 554 ntAPPRIS P1 TSL 4 BASIC16.39■□□□□ 0.21
CCDC187A0A096LP49 AC103808.2-201ENST00000582755 594 ntTSL 4 BASIC16.39■□□□□ 0.21
CCDC187A0A096LP49 RAB9A-203ENST00000618931 737 ntAPPRIS P1 TSL 2 BASIC16.39■□□□□ 0.21
CCDC187A0A096LP49 CBY1-211ENST00000619293 1118 ntTSL 5 BASIC16.39■□□□□ 0.21
CCDC187A0A096LP49 AC110491.3-201ENST00000631985 460 ntTSL 2 BASIC16.39■□□□□ 0.21
CCDC187A0A096LP49 C1orf159-205ENST00000421241 1841 ntAPPRIS P3 TSL 2 BASIC16.39■□□□□ 0.21
CCDC187A0A096LP49 SLC16A5-203ENST00000538213 1842 ntAPPRIS ALT2 TSL 2 BASIC16.39■□□□□ 0.21
CCDC187A0A096LP49 AC046185.3-201ENST00000623228 1824 ntBASIC16.39■□□□□ 0.21
CCDC187A0A096LP49 EDN3-204ENST00000371028 2397 ntAPPRIS P4 TSL 5 BASIC16.39■□□□□ 0.21
CCDC187A0A096LP49 CGRRF1-201ENST00000216420 2057 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CCDC187A0A096LP49 AC007040.2-201ENST00000606025 4170 ntAPPRIS P1 TSL 5 BASIC16.39■□□□□ 0.21
CCDC187A0A096LP49 RAD23A-201ENST00000316856 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CCDC187A0A096LP49 AC099684.1-202ENST00000425277 1747 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
CCDC187A0A096LP49 WDR74-204ENST00000525239 1736 ntAPPRIS P1 TSL 2 BASIC16.39■□□□□ 0.21
CCDC187A0A096LP49 PWP1-202ENST00000541166 1722 ntTSL 2 BASIC16.39■□□□□ 0.21
CCDC187A0A096LP49 ADAM15-207ENST00000368413 1901 ntTSL 5 BASIC16.39■□□□□ 0.21
CCDC187A0A096LP49 ATP6AP2-214ENST00000636287 1904 ntAPPRIS ALT2 TSL 5 BASIC16.39■□□□□ 0.21
CCDC187A0A096LP49 ISLR2-201ENST00000361742 4817 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CCDC187A0A096LP49 LARGE2-201ENST00000325468 2522 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
CCDC187A0A096LP49 NAA60-201ENST00000360862 2522 ntTSL 2 BASIC16.39■□□□□ 0.21
CCDC187A0A096LP49 COL18A1-202ENST00000355480 5924 ntAPPRIS P3 TSL 1 (best) BASIC16.38■□□□□ 0.21
CCDC187A0A096LP49 RNF146-203ENST00000368314 2369 ntAPPRIS ALT1 TSL 2 BASIC16.38■□□□□ 0.21
CCDC187A0A096LP49 ASPHD2-201ENST00000215906 3357 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
CCDC187A0A096LP49 HCN4-201ENST00000261917 7228 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
CCDC187A0A096LP49 MED25-202ENST00000538643 1623 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
CCDC187A0A096LP49 TMEM106C-203ENST00000449758 1414 ntTSL 2 BASIC16.38■□□□□ 0.21
CCDC187A0A096LP49 CCDC43-201ENST00000315286 2082 ntAPPRIS P2 TSL 1 (best) BASIC16.38■□□□□ 0.21
CCDC187A0A096LP49 RUNDC3B-203ENST00000394654 2064 ntAPPRIS P4 TSL 2 BASIC16.38■□□□□ 0.21
CCDC187A0A096LP49 RNF146-213ENST00000610153 2070 ntAPPRIS ALT1 TSL 2 BASIC16.38■□□□□ 0.21
CCDC187A0A096LP49 KRT16P6-201ENST00000417510 1873 ntTSL 5 BASIC16.38■□□□□ 0.21
CCDC187A0A096LP49 SCYL1-202ENST00000279270 1659 ntTSL 5 BASIC16.38■□□□□ 0.21
CCDC187A0A096LP49 GATA2-202ENST00000430265 2525 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
CCDC187A0A096LP49 NKAIN2-201ENST00000368416 1106 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
CCDC187A0A096LP49 ADH5P3-201ENST00000433842 1137 ntBASIC16.38■□□□□ 0.21
CCDC187A0A096LP49 LHX6-205ENST00000464484 666 ntTSL 2 BASIC16.38■□□□□ 0.21
CCDC187A0A096LP49 LAMTOR4-206ENST00000473459 720 ntTSL 2 BASIC16.38■□□□□ 0.21
CCDC187A0A096LP49 FAM86C2P-203ENST00000528684 1004 ntBASIC16.38■□□□□ 0.21
CCDC187A0A096LP49 CARNS1-205ENST00000531040 2968 ntTSL 5 BASIC16.38■□□□□ 0.21
CCDC187A0A096LP49 CIRBP-204ENST00000585630 870 ntAPPRIS P3 TSL 3 BASIC16.38■□□□□ 0.21
CCDC187A0A096LP49 REXO1L9P-201ENST00000604264 2108 ntBASIC16.38■□□□□ 0.21
CCDC187A0A096LP49 AC026120.1-201ENST00000611536 926 ntBASIC16.38■□□□□ 0.21
CCDC187A0A096LP49 GRIFIN-202ENST00000614228 461 ntAPPRIS P1 TSL 5 BASIC16.38■□□□□ 0.21
CCDC187A0A096LP49 EPB41L2-211ENST00000525271 2568 ntTSL 2 BASIC16.38■□□□□ 0.21
CCDC187A0A096LP49 HIST1H2BN-204ENST00000612898 1723 ntAPPRIS P1 BASIC16.38■□□□□ 0.21
CCDC187A0A096LP49 KRT18P55-202ENST00000578578 1546 ntBASIC16.38■□□□□ 0.21
CCDC187A0A096LP49 NEFHP1-201ENST00000412845 2629 ntBASIC16.38■□□□□ 0.21
CCDC187A0A096LP49 ADAMTS9-202ENST00000459780 2871 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
CCDC187A0A096LP49 ACVR1B-203ENST00000426655 1782 ntTSL 2 BASIC16.38■□□□□ 0.21
CCDC187A0A096LP49 COQ10B-201ENST00000263960 2239 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
CCDC187A0A096LP49 SPPL2C-201ENST00000329196 2238 ntAPPRIS P1 BASIC16.38■□□□□ 0.21
CCDC187A0A096LP49 SOD2-206ENST00000452684 2045 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
CCDC187A0A096LP49 COPS7A-204ENST00000534947 2034 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
CCDC187A0A096LP49 ARID1B-202ENST00000346085 10194 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
CCDC187A0A096LP49 CYR61-201ENST00000451137 2290 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
CCDC187A0A096LP49 RNF32-201ENST00000311822 1842 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
CCDC187A0A096LP49 GYG1-214ENST00000627418 1831 ntTSL 5 BASIC16.38■□□□□ 0.21
CCDC187A0A096LP49 KCNH1-210ENST00000640044 1818 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
CCDC187A0A096LP49 TXNRD3-203ENST00000524230 2950 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
CCDC187A0A096LP49 SEPT8-201ENST00000296873 4394 ntAPPRIS P2 TSL 1 (best) BASIC16.38■□□□□ 0.21
CCDC187A0A096LP49 CLMP-201ENST00000448775 5072 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
CCDC187A0A096LP49 DSCR9-201ENST00000454482 1644 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
CCDC187A0A096LP49 MMP9-201ENST00000372330 2336 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
CCDC187A0A096LP49 SOD2-215ENST00000546087 2558 ntTSL 2 BASIC16.37■□□□□ 0.21
CCDC187A0A096LP49 AL135999.2-201ENST00000622438 1686 ntBASIC16.37■□□□□ 0.21
CCDC187A0A096LP49 RPRD1A-209ENST00000590898 1945 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
CCDC187A0A096LP49 PNLDC1-207ENST00000610273 1940 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
CCDC187A0A096LP49 CARMIL2-201ENST00000334583 4687 ntAPPRIS P3 TSL 1 (best) BASIC16.37■□□□□ 0.21
CCDC187A0A096LP49 SNX4-201ENST00000251775 2513 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 33 ms