Protein–RNA interactions for Protein: Q9UPM8

AP4E1, AP-4 complex subunit epsilon-1, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AP4E1Q9UPM8 PKD1P1-201ENST00000458669 6805 ntBASIC18.06■□□□□ 0.48
AP4E1Q9UPM8 PROSER2-201ENST00000277570 3333 ntAPPRIS P2 TSL 1 (best) BASIC18.06■□□□□ 0.48
AP4E1Q9UPM8 CREB3L1-206ENST00000621158 2687 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
AP4E1Q9UPM8 PDE9A-203ENST00000335440 1728 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
AP4E1Q9UPM8 GOLGA2P9-203ENST00000600260 2033 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
AP4E1Q9UPM8 AP5B1-201ENST00000532090 4811 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
AP4E1Q9UPM8 MAPRE1-201ENST00000375571 2623 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
AP4E1Q9UPM8 CSF3-202ENST00000331769 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
AP4E1Q9UPM8 EPHX2-204ENST00000518379 1959 ntAPPRIS ALT2 TSL 5 BASIC18.06■□□□□ 0.48
AP4E1Q9UPM8 PML-220ENST00000569477 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
AP4E1Q9UPM8 CCNYL1-201ENST00000295414 3767 ntTSL 5 BASIC18.06■□□□□ 0.48
AP4E1Q9UPM8 TSPYL5-201ENST00000322128 4491 ntAPPRIS P1 BASIC18.06■□□□□ 0.48
AP4E1Q9UPM8 KDM1A-201ENST00000356634 3033 ntAPPRIS P3 TSL 1 (best) BASIC18.06■□□□□ 0.48
AP4E1Q9UPM8 KIAA0895-208ENST00000440378 2441 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
AP4E1Q9UPM8 ZHX1-C8orf76-201ENST00000357082 1257 ntAPPRIS P2 TSL 2 BASIC18.06■□□□□ 0.48
AP4E1Q9UPM8 CLDN15-202ENST00000401528 2131 ntAPPRIS P1 TSL 2 BASIC18.06■□□□□ 0.48
AP4E1Q9UPM8 CRELD2-202ENST00000403427 1242 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
AP4E1Q9UPM8 UBXN10-AS1-201ENST00000442226 510 ntTSL 2 BASIC18.06■□□□□ 0.48
AP4E1Q9UPM8 AC132008.2-207ENST00000454517 770 ntBASIC18.06■□□□□ 0.48
AP4E1Q9UPM8 HOXB-AS2-201ENST00000464382 845 ntTSL 4 BASIC18.06■□□□□ 0.48
AP4E1Q9UPM8 ANKRD13D-218ENST00000515828 1111 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
AP4E1Q9UPM8 AC079385.1-201ENST00000551505 570 ntTSL 4 BASIC18.06■□□□□ 0.48
AP4E1Q9UPM8 EFCAB11-211ENST00000556609 568 ntTSL 3 BASIC18.06■□□□□ 0.48
AP4E1Q9UPM8 AP001269.4-201ENST00000609611 512 ntBASIC18.06■□□□□ 0.48
AP4E1Q9UPM8 HECTD2-204ENST00000446394 4939 ntTSL 2 BASIC18.06■□□□□ 0.48
AP4E1Q9UPM8 LYPLAL1-201ENST00000366927 1819 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
AP4E1Q9UPM8 SMPD4-202ENST00000409031 4896 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
AP4E1Q9UPM8 PIR-202ENST00000380421 1539 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
AP4E1Q9UPM8 CFAP100-201ENST00000352312 2086 ntAPPRIS P2 TSL 2 BASIC18.06■□□□□ 0.48
AP4E1Q9UPM8 PARP6-220ENST00000569795 2855 ntAPPRIS P1 TSL 5 BASIC18.06■□□□□ 0.48
AP4E1Q9UPM8 CORO6-210ENST00000580212 2345 ntTSL 5 BASIC18.06■□□□□ 0.48
AP4E1Q9UPM8 SCRN2-202ENST00000407215 1779 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
AP4E1Q9UPM8 RAI2-203ENST00000415486 2037 ntTSL 2 BASIC18.06■□□□□ 0.48
AP4E1Q9UPM8 TRIM17-201ENST00000295033 1730 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
AP4E1Q9UPM8 KXD1-201ENST00000222307 1426 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
AP4E1Q9UPM8 PCDHA8-202ENST00000531613 5260 ntAPPRIS P2 TSL 1 (best) BASIC18.06■□□□□ 0.48
AP4E1Q9UPM8 DIAPH2-205ENST00000373061 4983 ntAPPRIS ALT2 TSL 5 BASIC18.06■□□□□ 0.48
AP4E1Q9UPM8 UBE2O-201ENST00000319380 5436 ntAPPRIS P2 TSL 1 (best) BASIC18.05■□□□□ 0.48
AP4E1Q9UPM8 CSRNP1-201ENST00000273153 3148 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
AP4E1Q9UPM8 AC148477.5-201ENST00000625164 1645 ntBASIC18.05■□□□□ 0.48
AP4E1Q9UPM8 DGKI-203ENST00000446122 4070 ntAPPRIS ALT2 TSL 5 BASIC18.05■□□□□ 0.48
AP4E1Q9UPM8 GGNBP2-212ENST00000613102 2847 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
AP4E1Q9UPM8 BBS7-204ENST00000506636 2570 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
AP4E1Q9UPM8 VSIG10L2-202ENST00000638636 2304 ntAPPRIS P1 TSL 5 BASIC18.05■□□□□ 0.48
AP4E1Q9UPM8 CLDN4-201ENST00000340958 1831 ntAPPRIS P1 BASIC18.05■□□□□ 0.48
AP4E1Q9UPM8 VKORC1L1-201ENST00000360768 5899 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
AP4E1Q9UPM8 LOXL3-205ENST00000409986 2005 ntTSL 2 BASIC18.05■□□□□ 0.48
AP4E1Q9UPM8 ICAM3-205ENST00000589261 2024 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
AP4E1Q9UPM8 SIT1-201ENST00000259608 1231 ntAPPRIS P2 TSL 1 (best) BASIC18.05■□□□□ 0.48
AP4E1Q9UPM8 S100A11-201ENST00000271638 594 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
AP4E1Q9UPM8 CKLF-202ENST00000345436 571 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
AP4E1Q9UPM8 EMD-201ENST00000369835 966 ntTSL 3 BASIC18.05■□□□□ 0.48
AP4E1Q9UPM8 SLC25A1P3-201ENST00000395415 828 ntBASIC18.05■□□□□ 0.48
AP4E1Q9UPM8 SPDYE21P-201ENST00000413323 827 ntBASIC18.05■□□□□ 0.48
AP4E1Q9UPM8 TSPY19P-201ENST00000418461 509 ntBASIC18.05■□□□□ 0.48
AP4E1Q9UPM8 TSPY18P-201ENST00000441642 509 ntBASIC18.05■□□□□ 0.48
AP4E1Q9UPM8 PGAP2-206ENST00000459679 795 ntTSL 2 BASIC18.05■□□□□ 0.48
AP4E1Q9UPM8 AC021739.5-201ENST00000558637 494 ntTSL 3 BASIC18.05■□□□□ 0.48
AP4E1Q9UPM8 AC020934.1-201ENST00000588469 739 ntTSL 3 BASIC18.05■□□□□ 0.48
AP4E1Q9UPM8 CLEC4GP1-201ENST00000596555 870 ntBASIC18.05■□□□□ 0.48
AP4E1Q9UPM8 AC012313.10-201ENST00000623509 926 ntBASIC18.05■□□□□ 0.48
AP4E1Q9UPM8 PTPN11-207ENST00000639857 801 ntTSL 5 BASIC18.05■□□□□ 0.48
AP4E1Q9UPM8 NUDT9-201ENST00000302174 1701 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
AP4E1Q9UPM8 EMILIN3-201ENST00000332312 3796 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
AP4E1Q9UPM8 CLDN7-203ENST00000538261 1923 ntTSL 5 BASIC18.05■□□□□ 0.48
AP4E1Q9UPM8 SWSAP1-201ENST00000312423 1684 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
AP4E1Q9UPM8 AL135999.2-201ENST00000622438 1686 ntBASIC18.05■□□□□ 0.48
AP4E1Q9UPM8 ARNTL-201ENST00000389707 2776 ntAPPRIS P3 TSL 1 (best) BASIC18.05■□□□□ 0.48
AP4E1Q9UPM8 IL2RG-202ENST00000374188 1432 ntTSL 5 BASIC18.05■□□□□ 0.48
AP4E1Q9UPM8 ERVK13-1-203ENST00000564340 1449 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
AP4E1Q9UPM8 PTPN21-208ENST00000556564 6166 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
AP4E1Q9UPM8 MAP4K4-202ENST00000324219 7526 ntTSL 5 BASIC18.04■□□□□ 0.48
AP4E1Q9UPM8 NAGPA-201ENST00000312251 2202 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
AP4E1Q9UPM8 TEX13A-201ENST00000600991 1377 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
AP4E1Q9UPM8 AC005329.3-201ENST00000626781 1366 ntTSL 5 BASIC18.04■□□□□ 0.48
AP4E1Q9UPM8 EGR3-204ENST00000522910 1553 ntAPPRIS ALT1 TSL 2 BASIC18.04■□□□□ 0.48
AP4E1Q9UPM8 TMEM145-201ENST00000301204 1768 ntAPPRIS P2 TSL 2 BASIC18.04■□□□□ 0.48
AP4E1Q9UPM8 FAM153A-203ENST00000440605 1966 ntAPPRIS P2 TSL 1 (best) BASIC18.04■□□□□ 0.48
AP4E1Q9UPM8 L1CAM-203ENST00000370055 4655 ntTSL 5 BASIC18.04■□□□□ 0.48
AP4E1Q9UPM8 PRKRIP1-208ENST00000496391 3430 ntAPPRIS P1 TSL 2 BASIC18.04■□□□□ 0.48
AP4E1Q9UPM8 RNF222-201ENST00000344001 2786 ntAPPRIS P1 BASIC18.04■□□□□ 0.48
AP4E1Q9UPM8 CBWD1-202ENST00000356521 1706 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
AP4E1Q9UPM8 C18orf63-201ENST00000579455 5127 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
AP4E1Q9UPM8 STXBP3-201ENST00000370008 2478 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
AP4E1Q9UPM8 GCAT-202ENST00000323205 1656 ntTSL 2 BASIC18.04■□□□□ 0.48
AP4E1Q9UPM8 MRPL43-208ENST00000370242 884 ntTSL 2 BASIC18.04■□□□□ 0.48
AP4E1Q9UPM8 PSMA7-201ENST00000370858 925 ntTSL 2 BASIC18.04■□□□□ 0.48
AP4E1Q9UPM8 PSMA7-203ENST00000370873 996 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
AP4E1Q9UPM8 AL020989.1-201ENST00000422979 469 ntBASIC18.04■□□□□ 0.48
AP4E1Q9UPM8 UBE2E1-AS1-201ENST00000426702 778 ntTSL 3 BASIC18.04■□□□□ 0.48
AP4E1Q9UPM8 GNB2-207ENST00000427895 1146 ntTSL 5 BASIC18.04■□□□□ 0.48
AP4E1Q9UPM8 AL391650.1-205ENST00000433939 579 ntAPPRIS P1 TSL 3 BASIC18.04■□□□□ 0.48
AP4E1Q9UPM8 AP003555.3-201ENST00000534086 432 ntTSL 4 BASIC18.04■□□□□ 0.48
AP4E1Q9UPM8 COX5A-202ENST00000562233 441 ntTSL 3 BASIC18.04■□□□□ 0.48
AP4E1Q9UPM8 RNPS1-224ENST00000569598 918 ntTSL 5 BASIC18.04■□□□□ 0.48
AP4E1Q9UPM8 AC002985.2-201ENST00000601106 957 ntTSL 4 BASIC18.04■□□□□ 0.48
AP4E1Q9UPM8 MED16-213ENST00000616387 1078 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
AP4E1Q9UPM8 GRAMD1B-214ENST00000635736 2814 ntAPPRIS P1 TSL 5 BASIC18.04■□□□□ 0.48
AP4E1Q9UPM8 NOL4L-205ENST00000375678 2042 ntAPPRIS ALT2 TSL 2 BASIC18.04■□□□□ 0.48
AP4E1Q9UPM8 GPBAR1-204ENST00000522678 2003 ntAPPRIS P1 TSL 2 BASIC18.04■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 38.9 ms