Protein–RNA interactions for Protein: Q9BRZ2

TRIM56, E3 ubiquitin-protein ligase TRIM56, humanhuman

Known RBP Predictions only

Length 755 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM56Q9BRZ2 KIF16B-203ENST00000408042 4640 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
TRIM56Q9BRZ2 NRG1-202ENST00000356819 5931 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
TRIM56Q9BRZ2 TOM1L2-207ENST00000535933 1748 ntTSL 2 BASIC17.79■□□□□ 0.44
TRIM56Q9BRZ2 KLC2-203ENST00000394066 2591 ntTSL 2 BASIC17.79■□□□□ 0.44
TRIM56Q9BRZ2 MBNL1-201ENST00000282486 6422 ntAPPRIS P4 TSL 5 BASIC17.79■□□□□ 0.44
TRIM56Q9BRZ2 DMKN-201ENST00000339686 1927 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
TRIM56Q9BRZ2 DOK4-201ENST00000340099 2772 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
TRIM56Q9BRZ2 MRPL24-202ENST00000368211 883 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
TRIM56Q9BRZ2 C6orf48-206ENST00000375641 602 ntAPPRIS P1 TSL 2 BASIC17.79■□□□□ 0.44
TRIM56Q9BRZ2 KLHDC7B-201ENST00000395676 2991 ntAPPRIS P1 BASIC17.79■□□□□ 0.44
TRIM56Q9BRZ2 PLCB1-204ENST00000404098 1260 ntTSL 3 BASIC17.79■□□□□ 0.44
TRIM56Q9BRZ2 MALL-203ENST00000427178 1070 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
TRIM56Q9BRZ2 AC007731.5-201ENST00000429594 644 ntAPPRIS P1 TSL 5 BASIC17.79■□□□□ 0.44
TRIM56Q9BRZ2 AC099669.1-201ENST00000457331 456 ntTSL 3 BASIC17.79■□□□□ 0.44
TRIM56Q9BRZ2 CCNG1-211ENST00000512163 919 ntTSL 2 BASIC17.79■□□□□ 0.44
TRIM56Q9BRZ2 AC022616.7-201ENST00000525383 220 ntBASIC17.79■□□□□ 0.44
TRIM56Q9BRZ2 AC002310.4-201ENST00000568114 377 ntAPPRIS P1 TSL 5 BASIC17.79■□□□□ 0.44
TRIM56Q9BRZ2 MCRIP1-206ENST00000573478 1123 ntTSL 2 BASIC17.79■□□□□ 0.44
TRIM56Q9BRZ2 TMED1-207ENST00000591695 809 ntTSL 5 BASIC17.79■□□□□ 0.44
TRIM56Q9BRZ2 BAGE2-202ENST00000474011 1482 ntTSL 2 BASIC17.79■□□□□ 0.44
TRIM56Q9BRZ2 PDLIM7-202ENST00000355841 1689 ntAPPRIS P4 TSL 1 (best) BASIC17.79■□□□□ 0.44
TRIM56Q9BRZ2 AC112229.1-202ENST00000490013 2918 ntTSL 2 BASIC17.79■□□□□ 0.44
TRIM56Q9BRZ2 TRAF2-201ENST00000247668 2264 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
TRIM56Q9BRZ2 PDE8B-201ENST00000264917 5956 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
TRIM56Q9BRZ2 WASF1-202ENST00000359451 3075 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
TRIM56Q9BRZ2 SVOPL-204ENST00000436657 1420 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
TRIM56Q9BRZ2 RABGAP1L-204ENST00000357444 2605 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
TRIM56Q9BRZ2 ALOX12-201ENST00000251535 2358 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
TRIM56Q9BRZ2 SLX1A-SULT1A3-202ENST00000565342 2195 ntTSL 2 BASIC17.79■□□□□ 0.44
TRIM56Q9BRZ2 CLEC4G-201ENST00000328853 1360 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
TRIM56Q9BRZ2 ADGRB2-206ENST00000398556 4879 ntAPPRIS ALT2 TSL 5 BASIC17.78■□□□□ 0.44
TRIM56Q9BRZ2 ACAP1-201ENST00000158762 2512 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
TRIM56Q9BRZ2 PBK-201ENST00000301905 2118 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
TRIM56Q9BRZ2 PCNX2-201ENST00000258229 7518 ntAPPRIS P2 TSL 5 BASIC17.78■□□□□ 0.44
TRIM56Q9BRZ2 ACSF3-202ENST00000378345 1541 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
TRIM56Q9BRZ2 AL445238.1-203ENST00000606050 1525 ntTSL 2 BASIC17.78■□□□□ 0.44
TRIM56Q9BRZ2 BX276092.7-203ENST00000637198 1536 ntBASIC17.78■□□□□ 0.44
TRIM56Q9BRZ2 PRX-202ENST00000324001 4855 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
TRIM56Q9BRZ2 TRMT44-205ENST00000513449 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
TRIM56Q9BRZ2 HFE2-201ENST00000336751 2234 ntAPPRIS P1 TSL 2 BASIC17.78■□□□□ 0.44
TRIM56Q9BRZ2 RNF7-201ENST00000273480 2763 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
TRIM56Q9BRZ2 TMEM189-UBE2V1-201ENST00000341698 2757 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
TRIM56Q9BRZ2 MAP2K5-202ENST00000340972 1491 ntTSL 2 BASIC17.78■□□□□ 0.44
TRIM56Q9BRZ2 KMT5C-212ENST00000630497 2037 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
TRIM56Q9BRZ2 LYPLA2-205ENST00000374514 1810 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
TRIM56Q9BRZ2 NAT6-205ENST00000443842 1820 ntAPPRIS ALT2 TSL 2 BASIC17.78■□□□□ 0.44
TRIM56Q9BRZ2 EDARADD-201ENST00000334232 858 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
TRIM56Q9BRZ2 DDT-202ENST00000398344 713 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
TRIM56Q9BRZ2 DDT-203ENST00000403754 569 ntTSL 3 BASIC17.78■□□□□ 0.44
TRIM56Q9BRZ2 DDT-206ENST00000430101 573 ntTSL 2 BASIC17.78■□□□□ 0.44
TRIM56Q9BRZ2 DMKN-215ENST00000451297 1111 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
TRIM56Q9BRZ2 ACY1-210ENST00000494103 1298 ntTSL 3 BASIC17.78■□□□□ 0.44
TRIM56Q9BRZ2 ZNF706-204ENST00000518336 501 ntAPPRIS P1 TSL 4 BASIC17.78■□□□□ 0.44
TRIM56Q9BRZ2 LY6E-213ENST00000522528 606 ntTSL 3 BASIC17.78■□□□□ 0.44
TRIM56Q9BRZ2 GOLGA2P7-203ENST00000557881 896 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
TRIM56Q9BRZ2 DUX4-205ENST00000570263 768 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
TRIM56Q9BRZ2 NAA38-203ENST00000575071 553 ntTSL 2 BASIC17.78■□□□□ 0.44
TRIM56Q9BRZ2 BVES-AS1-203ENST00000580511 853 ntTSL 5 BASIC17.78■□□□□ 0.44
TRIM56Q9BRZ2 DHRS2-210ENST00000611765 1287 ntAPPRIS ALT2 TSL 2 BASIC17.78■□□□□ 0.44
TRIM56Q9BRZ2 CLN3-259ENST00000637551 1083 ntTSL 5 BASIC17.78■□□□□ 0.44
TRIM56Q9BRZ2 DMKN-213ENST00000447113 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
TRIM56Q9BRZ2 CDCP2-202ENST00000530059 1623 ntAPPRIS ALT2 TSL 5 BASIC17.78■□□□□ 0.44
TRIM56Q9BRZ2 ARHGAP9-204ENST00000430041 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
TRIM56Q9BRZ2 RUVBL1-201ENST00000322623 1761 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
TRIM56Q9BRZ2 ASTN2-202ENST00000313400 4747 ntAPPRIS ALT2 TSL 5 BASIC17.78■□□□□ 0.44
TRIM56Q9BRZ2 MFSD11-219ENST00000593181 1922 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
TRIM56Q9BRZ2 ZC3H7B-201ENST00000352645 5909 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
TRIM56Q9BRZ2 B3GNT3-201ENST00000318683 2226 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
TRIM56Q9BRZ2 CLN5-208ENST00000636183 6664 ntAPPRIS P2 TSL 1 (best) BASIC17.78■□□□□ 0.44
TRIM56Q9BRZ2 NAT9-201ENST00000357814 1875 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
TRIM56Q9BRZ2 DFNA5-203ENST00000409970 2005 ntTSL 5 BASIC17.77■□□□□ 0.44
TRIM56Q9BRZ2 RTCA-203ENST00000370128 2535 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
TRIM56Q9BRZ2 PRDM5-203ENST00000428209 2338 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
TRIM56Q9BRZ2 ZACN-201ENST00000334586 1335 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
TRIM56Q9BRZ2 FBXO18-203ENST00000397269 3640 ntTSL 5 BASIC17.77■□□□□ 0.44
TRIM56Q9BRZ2 ZBTB32-201ENST00000262630 1960 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
TRIM56Q9BRZ2 PRAG1-201ENST00000615670 4903 ntAPPRIS P1 TSL 5 BASIC17.77■□□□□ 0.44
TRIM56Q9BRZ2 MEST-202ENST00000341441 2443 ntAPPRIS ALT1 TSL 1 (best) BASIC17.77■□□□□ 0.44
TRIM56Q9BRZ2 SOD2-215ENST00000546087 2558 ntTSL 2 BASIC17.77■□□□□ 0.44
TRIM56Q9BRZ2 MAFB-201ENST00000373313 3393 ntAPPRIS P1 BASIC17.77■□□□□ 0.44
TRIM56Q9BRZ2 VAV2-202ENST00000371851 5101 ntAPPRIS ALT2 TSL 5 BASIC17.77■□□□□ 0.44
TRIM56Q9BRZ2 LINC01569-202ENST00000573042 2093 ntTSL 2 BASIC17.77■□□□□ 0.44
TRIM56Q9BRZ2 RHEBL1-201ENST00000301068 1210 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
TRIM56Q9BRZ2 GUK1-204ENST00000366721 689 ntTSL 3 BASIC17.77■□□□□ 0.44
TRIM56Q9BRZ2 ISG15-201ENST00000379389 711 ntAPPRIS P2 TSL 1 (best) BASIC17.77■□□□□ 0.44
TRIM56Q9BRZ2 AC005104.2-201ENST00000427818 678 ntBASIC17.77■□□□□ 0.44
TRIM56Q9BRZ2 AF250324.1-201ENST00000506276 703 ntTSL 3 BASIC17.77■□□□□ 0.44
TRIM56Q9BRZ2 RARA-206ENST00000425707 3041 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
TRIM56Q9BRZ2 NEIL2-203ENST00000436750 2226 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
TRIM56Q9BRZ2 ADAMTS13-206ENST00000371929 4934 ntAPPRIS P4 TSL 1 (best) BASIC17.77■□□□□ 0.44
TRIM56Q9BRZ2 THNSL2-203ENST00000377254 1560 ntTSL 2 BASIC17.77■□□□□ 0.44
TRIM56Q9BRZ2 PPP3CA-201ENST00000323055 4519 ntTSL 1 (best) BASIC17.77■□□□□ 0.43
TRIM56Q9BRZ2 GOLGA2P9-203ENST00000600260 2033 ntTSL 1 (best) BASIC17.77■□□□□ 0.43
TRIM56Q9BRZ2 PPP1R3E-201ENST00000452015 4773 ntAPPRIS P1 TSL 2 BASIC17.77■□□□□ 0.43
TRIM56Q9BRZ2 USP2-202ENST00000455332 2903 ntTSL 1 (best) BASIC17.77■□□□□ 0.43
TRIM56Q9BRZ2 PIGX-202ENST00000392391 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.43
TRIM56Q9BRZ2 PHF20L1-220ENST00000622263 3375 ntAPPRIS P1 TSL 5 BASIC17.77■□□□□ 0.43
TRIM56Q9BRZ2 CACNA1G-202ENST00000354983 8138 ntAPPRIS ALT2 TSL 5 BASIC17.77■□□□□ 0.43
TRIM56Q9BRZ2 CCDC74B-202ENST00000392984 1353 ntAPPRIS ALT2 TSL 5 BASIC17.77■□□□□ 0.43
TRIM56Q9BRZ2 UPP1-203ENST00000395564 1375 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 34.1 ms