Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 GOLGA7-203ENST00000518270 808 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
VPS35Q96QK1 CARHSP1-205ENST00000562843 843 ntTSL 2 BASIC17.3■□□□□ 0.36
VPS35Q96QK1 AC020909.1-201ENST00000599632 1265 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
VPS35Q96QK1 AC011247.3-202ENST00000605062 570 ntTSL 4 BASIC17.3■□□□□ 0.36
VPS35Q96QK1 TP73-AS1-207ENST00000624167 988 ntBASIC17.3■□□□□ 0.36
VPS35Q96QK1 AL022326.1-202ENST00000641533 845 ntBASIC17.3■□□□□ 0.36
VPS35Q96QK1 AC064853.6-201ENST00000642029 303 ntAPPRIS P1 BASIC17.3■□□□□ 0.36
VPS35Q96QK1 SLC39A1-210ENST00000617697 2214 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
VPS35Q96QK1 PP7080-201ENST00000342584 1876 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
VPS35Q96QK1 IL18BP-207ENST00000404792 2172 ntAPPRIS P2 TSL 1 (best) BASIC17.3■□□□□ 0.36
VPS35Q96QK1 BEST2-202ENST00000549706 2183 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
VPS35Q96QK1 PANX1-201ENST00000227638 2769 ntAPPRIS P2 TSL 1 (best) BASIC17.3■□□□□ 0.36
VPS35Q96QK1 PIGZ-202ENST00000412723 2701 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
VPS35Q96QK1 PRMT2-203ENST00000355680 2688 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
VPS35Q96QK1 FAM208A-209ENST00000493960 5600 ntAPPRIS P2 TSL 5 BASIC17.3■□□□□ 0.36
VPS35Q96QK1 PTPRU-202ENST00000373779 5579 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
VPS35Q96QK1 DDIT4L-201ENST00000273990 2604 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
VPS35Q96QK1 GTF2H4-201ENST00000259895 1735 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
VPS35Q96QK1 LRRN4CL-201ENST00000317449 2585 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
VPS35Q96QK1 PRKRIP1-208ENST00000496391 3430 ntAPPRIS P1 TSL 2 BASIC17.3■□□□□ 0.36
VPS35Q96QK1 CRB3-203ENST00000598494 1443 ntAPPRIS ALT2 TSL 2 BASIC17.3■□□□□ 0.36
VPS35Q96QK1 RGL3-202ENST00000393423 2278 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
VPS35Q96QK1 RAB43-201ENST00000315150 4467 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
VPS35Q96QK1 RPS6KA5-201ENST00000418736 2249 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
VPS35Q96QK1 CABP1-201ENST00000288616 1369 ntAPPRIS P4 TSL 1 (best) BASIC17.29■□□□□ 0.36
VPS35Q96QK1 NFATC1-210ENST00000587635 2195 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
VPS35Q96QK1 AC148477.5-201ENST00000625164 1645 ntBASIC17.29■□□□□ 0.36
VPS35Q96QK1 RABEP1-202ENST00000537505 5365 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
VPS35Q96QK1 GGA1-203ENST00000343632 3159 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
VPS35Q96QK1 AC046185.3-201ENST00000623228 1824 ntBASIC17.29■□□□□ 0.36
VPS35Q96QK1 WIZ-201ENST00000263381 5695 ntAPPRIS P2 TSL 2 BASIC17.29■□□□□ 0.36
VPS35Q96QK1 EIF3B-201ENST00000360876 3055 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
VPS35Q96QK1 CREM-211ENST00000374726 1207 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
VPS35Q96QK1 SMIM11A-202ENST00000399295 1074 ntAPPRIS P1 TSL 2 BASIC17.29■□□□□ 0.36
VPS35Q96QK1 POM121L12-201ENST00000408890 1283 ntAPPRIS P1 BASIC17.29■□□□□ 0.36
VPS35Q96QK1 RPL13P5-203ENST00000421824 845 ntTSL 3 BASIC17.29■□□□□ 0.36
VPS35Q96QK1 HOXB-AS4-202ENST00000480386 566 ntTSL 4 BASIC17.29■□□□□ 0.36
VPS35Q96QK1 AP002469.2-201ENST00000531724 424 ntBASIC17.29■□□□□ 0.36
VPS35Q96QK1 CALM3-211ENST00000598871 561 ntTSL 4 BASIC17.29■□□□□ 0.36
VPS35Q96QK1 LINC00454-206ENST00000609861 841 ntTSL 5 BASIC17.29■□□□□ 0.36
VPS35Q96QK1 SMIM11B-207ENST00000624758 1074 ntAPPRIS P1 TSL 2 BASIC17.29■□□□□ 0.36
VPS35Q96QK1 FBF1-205ENST00000586717 4825 ntAPPRIS ALT2 TSL 5 BASIC17.29■□□□□ 0.36
VPS35Q96QK1 ZBTB16-201ENST00000335953 2523 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
VPS35Q96QK1 TBXAS1-204ENST00000416849 2505 ntTSL 5 BASIC17.29■□□□□ 0.36
VPS35Q96QK1 REPS2-201ENST00000303843 7771 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
VPS35Q96QK1 CARNS1-202ENST00000445895 3971 ntAPPRIS P1 TSL 5 BASIC17.29■□□□□ 0.36
VPS35Q96QK1 RDH8-203ENST00000591589 1715 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
VPS35Q96QK1 DHX33-201ENST00000225296 5618 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
VPS35Q96QK1 C9orf64-203ENST00000376344 2443 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
VPS35Q96QK1 NODAL-201ENST00000287139 1665 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
VPS35Q96QK1 MBD4-202ENST00000393278 1684 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
VPS35Q96QK1 TMEM175-201ENST00000264771 1860 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
VPS35Q96QK1 VAV2-203ENST00000406606 4691 ntAPPRIS P2 TSL 1 (best) BASIC17.29■□□□□ 0.36
VPS35Q96QK1 ZNF296-202ENST00000622376 1631 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
VPS35Q96QK1 LINC01554-202ENST00000436592 2052 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
VPS35Q96QK1 CLDN9-201ENST00000445369 2050 ntAPPRIS P1 BASIC17.28■□□□□ 0.36
VPS35Q96QK1 C19orf54-203ENST00000470681 2521 ntTSL 2 BASIC17.28■□□□□ 0.36
VPS35Q96QK1 AC104809.2-201ENST00000418218 2274 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
VPS35Q96QK1 LRCH1-201ENST00000311191 4710 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
VPS35Q96QK1 MTG1-201ENST00000317502 1560 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
VPS35Q96QK1 SSBP3-203ENST00000371319 1578 ntAPPRIS ALT1 TSL 2 BASIC17.28■□□□□ 0.36
VPS35Q96QK1 EGR3-204ENST00000522910 1553 ntAPPRIS ALT1 TSL 2 BASIC17.28■□□□□ 0.36
VPS35Q96QK1 TXNRD2-218ENST00000542719 2024 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
VPS35Q96QK1 SLC7A9-202ENST00000587772 1568 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
VPS35Q96QK1 CXXC1-212ENST00000589940 2242 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
VPS35Q96QK1 SENP5-201ENST00000323460 6308 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
VPS35Q96QK1 SRRM2-201ENST00000301740 9353 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
VPS35Q96QK1 PLTP-202ENST00000372420 1530 ntTSL 2 BASIC17.28■□□□□ 0.36
VPS35Q96QK1 PEX13-204ENST00000444100 1533 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
VPS35Q96QK1 HTD2-201ENST00000461393 1508 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
VPS35Q96QK1 AJUBA-202ENST00000361265 2569 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
VPS35Q96QK1 TRNT1-205ENST00000402675 1935 ntTSL 2 BASIC17.28■□□□□ 0.36
VPS35Q96QK1 WDR13-201ENST00000218056 2124 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
VPS35Q96QK1 RWDD3-202ENST00000370202 1235 ntAPPRIS P1 TSL 3 BASIC17.28■□□□□ 0.36
VPS35Q96QK1 OLFM1-207ENST00000371801 568 ntTSL 2 BASIC17.28■□□□□ 0.36
VPS35Q96QK1 SLC9A3R1-202ENST00000413388 1285 ntTSL 2 BASIC17.28■□□□□ 0.36
VPS35Q96QK1 TTLL12-204ENST00000494035 888 ntTSL 2 BASIC17.28■□□□□ 0.36
VPS35Q96QK1 AC034243.1-201ENST00000520838 587 ntTSL 2 BASIC17.28■□□□□ 0.36
VPS35Q96QK1 MTUS2-205ENST00000542829 1165 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
VPS35Q96QK1 AC068594.1-202ENST00000581657 749 ntTSL 3 BASIC17.28■□□□□ 0.36
VPS35Q96QK1 AL121894.2-201ENST00000602977 491 ntBASIC17.28■□□□□ 0.36
VPS35Q96QK1 MYO1B-204ENST00000392318 5082 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
VPS35Q96QK1 ALKBH3-201ENST00000302708 1474 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
VPS35Q96QK1 INPP5J-207ENST00000405300 2515 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
VPS35Q96QK1 CLDN5-202ENST00000406028 2548 ntTSL 2 BASIC17.28■□□□□ 0.36
VPS35Q96QK1 LSP1-201ENST00000311604 1699 ntAPPRIS P4 TSL 1 (best) BASIC17.28■□□□□ 0.36
VPS35Q96QK1 CYP2D6-203ENST00000360608 1684 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
VPS35Q96QK1 NEXN-AS1-201ENST00000421331 2292 ntTSL 2 BASIC17.28■□□□□ 0.36
VPS35Q96QK1 CXorf40B-205ENST00000462691 1440 ntAPPRIS ALT1 TSL 3 BASIC17.28■□□□□ 0.36
VPS35Q96QK1 LRPPRC-203ENST00000409946 1848 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
VPS35Q96QK1 SUSD4-208ENST00000494793 1833 ntTSL 5 BASIC17.28■□□□□ 0.36
VPS35Q96QK1 TMEM198B-203ENST00000482378 2230 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
VPS35Q96QK1 FLOT2-202ENST00000394908 2618 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
VPS35Q96QK1 ZNF416-201ENST00000196489 2561 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
VPS35Q96QK1 TFAP2A-AS1-201ENST00000420777 1575 ntTSL 5 BASIC17.28■□□□□ 0.36
VPS35Q96QK1 ABCB8-211ENST00000477092 1596 ntTSL 5 BASIC17.28■□□□□ 0.36
VPS35Q96QK1 PTP4A3-202ENST00000349124 2710 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
VPS35Q96QK1 AHRR-209ENST00000512529 1912 ntTSL 5 BASIC17.27■□□□□ 0.36
VPS35Q96QK1 FLT3LG-204ENST00000595510 1301 ntTSL 5 BASIC17.27■□□□□ 0.36
VPS35Q96QK1 CXXC1P1-201ENST00000483225 1897 ntTSL 2 BASIC17.27■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 28.3 ms