Protein–RNA interactions for Protein: Q96JB5

CDK5RAP3, CDK5 regulatory subunit-associated protein 3, humanhuman

Predictions only

Length 506 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDK5RAP3Q96JB5 ADAD1-203ENST00000388725 1918 ntTSL 2 BASIC19.66■□□□□ 0.74
CDK5RAP3Q96JB5 TRNT1-205ENST00000402675 1935 ntTSL 2 BASIC19.66■□□□□ 0.74
CDK5RAP3Q96JB5 RIF1-204ENST00000430328 7992 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
CDK5RAP3Q96JB5 FAM237A-203ENST00000543490 1376 ntAPPRIS P1 TSL 5 BASIC19.66■□□□□ 0.74
CDK5RAP3Q96JB5 TPR-209ENST00000613151 2478 ntTSL 5 BASIC19.66■□□□□ 0.74
CDK5RAP3Q96JB5 CEP83-AS1-201ENST00000623122 2482 ntBASIC19.66■□□□□ 0.74
CDK5RAP3Q96JB5 TRIM9-201ENST00000298355 5284 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
CDK5RAP3Q96JB5 AC009779.2-201ENST00000552576 1443 ntTSL 4 BASIC19.66■□□□□ 0.74
CDK5RAP3Q96JB5 DNAJC28-203ENST00000402202 1480 ntAPPRIS P1 TSL 5 BASIC19.66■□□□□ 0.74
CDK5RAP3Q96JB5 LGMN-201ENST00000334869 2055 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
CDK5RAP3Q96JB5 CDC42BPG-201ENST00000342711 5742 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
CDK5RAP3Q96JB5 RIC8A-201ENST00000325207 2702 ntAPPRIS P3 TSL 1 (best) BASIC19.66■□□□□ 0.74
CDK5RAP3Q96JB5 BCL2L11-201ENST00000308659 1522 ntAPPRIS ALT2 TSL 2 BASIC19.66■□□□□ 0.74
CDK5RAP3Q96JB5 PLTP-202ENST00000372420 1530 ntTSL 2 BASIC19.66■□□□□ 0.74
CDK5RAP3Q96JB5 FUT8-AS1-201ENST00000621019 1521 ntBASIC19.66■□□□□ 0.74
CDK5RAP3Q96JB5 CCDC120-204ENST00000597275 2752 ntAPPRIS P3 TSL 2 BASIC19.66■□□□□ 0.74
CDK5RAP3Q96JB5 BPIFB4-201ENST00000375483 2159 ntAPPRIS P1 TSL 5 BASIC19.66■□□□□ 0.74
CDK5RAP3Q96JB5 WIF1-201ENST00000286574 2238 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
CDK5RAP3Q96JB5 HIC2-201ENST00000407464 6798 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CDK5RAP3Q96JB5 KCNC4-204ENST00000438661 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
CDK5RAP3Q96JB5 GGT5-201ENST00000263112 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
CDK5RAP3Q96JB5 MDGA2-202ENST00000399232 5075 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
CDK5RAP3Q96JB5 ZNF200-202ENST00000396870 2373 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
CDK5RAP3Q96JB5 GNAL-202ENST00000334049 6535 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
CDK5RAP3Q96JB5 GOLGA7-204ENST00000520817 1984 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CDK5RAP3Q96JB5 PRMT2-201ENST00000291705 1011 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
CDK5RAP3Q96JB5 PSCA-201ENST00000301258 1020 ntAPPRIS P2 TSL 1 (best) BASIC19.65■□□□□ 0.74
CDK5RAP3Q96JB5 S100A14-201ENST00000344616 1058 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CDK5RAP3Q96JB5 AL645608.6-201ENST00000418300 402 ntTSL 3 BASIC19.65■□□□□ 0.74
CDK5RAP3Q96JB5 AL096828.1-201ENST00000423020 542 ntTSL 4 BASIC19.65■□□□□ 0.74
CDK5RAP3Q96JB5 SBDSP1-202ENST00000423945 618 ntTSL 3 BASIC19.65■□□□□ 0.74
CDK5RAP3Q96JB5 FICD-205ENST00000552758 603 ntTSL 2 BASIC19.65■□□□□ 0.74
CDK5RAP3Q96JB5 AC087289.1-201ENST00000586808 890 ntTSL 5 BASIC19.65■□□□□ 0.74
CDK5RAP3Q96JB5 AL162497.1-201ENST00000615635 518 ntTSL 4 BASIC19.65■□□□□ 0.74
CDK5RAP3Q96JB5 AL117335.1-203ENST00000619200 948 ntTSL 5 BASIC19.65■□□□□ 0.74
CDK5RAP3Q96JB5 LCE1E-203ENST00000619588 267 ntAPPRIS ALT2 TSL 5 BASIC19.65■□□□□ 0.74
CDK5RAP3Q96JB5 TFAP2E-201ENST00000373235 2189 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CDK5RAP3Q96JB5 DIXDC1-208ENST00000615255 4825 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
CDK5RAP3Q96JB5 ZNF281-201ENST00000294740 4891 ntAPPRIS P3 TSL 1 (best) BASIC19.65■□□□□ 0.74
CDK5RAP3Q96JB5 MUM1-216ENST00000627377 2235 ntAPPRIS ALT2 TSL 5 BASIC19.65■□□□□ 0.74
CDK5RAP3Q96JB5 IRF3-202ENST00000377135 1442 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
CDK5RAP3Q96JB5 SLCO4A1-AS1-202ENST00000433126 1420 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
CDK5RAP3Q96JB5 TRAM1-205ENST00000521425 3394 ntTSL 2 BASIC19.65■□□□□ 0.74
CDK5RAP3Q96JB5 AL353593.2-201ENST00000602529 1483 ntBASIC19.65■□□□□ 0.74
CDK5RAP3Q96JB5 KCTD15-202ENST00000430256 2555 ntAPPRIS P1 TSL 2 BASIC19.65■□□□□ 0.74
CDK5RAP3Q96JB5 CHRNA5-201ENST00000299565 3623 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CDK5RAP3Q96JB5 KLHL22-201ENST00000328879 2616 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CDK5RAP3Q96JB5 SLC7A9-202ENST00000587772 1568 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CDK5RAP3Q96JB5 AP3D1-201ENST00000345016 4870 ntAPPRIS P3 TSL 1 (best) BASIC19.65■□□□□ 0.74
CDK5RAP3Q96JB5 TSPAN17-201ENST00000298564 2810 ntTSL 2 BASIC19.65■□□□□ 0.74
CDK5RAP3Q96JB5 SSB-201ENST00000260956 1709 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CDK5RAP3Q96JB5 TMEM59L-205ENST00000600490 1717 ntAPPRIS P1 TSL 5 BASIC19.65■□□□□ 0.74
CDK5RAP3Q96JB5 SYNGR2-206ENST00000589711 2041 ntTSL 5 BASIC19.64■□□□□ 0.74
CDK5RAP3Q96JB5 RNF34-201ENST00000361234 2066 ntAPPRIS ALT1 TSL 1 (best) BASIC19.64■□□□□ 0.74
CDK5RAP3Q96JB5 FAM129C-202ENST00000335393 2508 ntAPPRIS P3 TSL 1 (best) BASIC19.64■□□□□ 0.74
CDK5RAP3Q96JB5 ORAI2-202ENST00000403646 2528 ntAPPRIS P1 TSL 2 BASIC19.64■□□□□ 0.74
CDK5RAP3Q96JB5 RASA2-202ENST00000452898 2562 ntAPPRIS ALT2 TSL 5 BASIC19.64■□□□□ 0.73
CDK5RAP3Q96JB5 AC011474.1-201ENST00000582581 2582 ntTSL 2 BASIC19.64■□□□□ 0.73
CDK5RAP3Q96JB5 ADGRB2-206ENST00000398556 4879 ntAPPRIS ALT2 TSL 5 BASIC19.64■□□□□ 0.73
CDK5RAP3Q96JB5 CENPX-201ENST00000306704 751 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
CDK5RAP3Q96JB5 NEURL2-201ENST00000372518 1278 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
CDK5RAP3Q96JB5 PFDN6-201ENST00000374606 740 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
CDK5RAP3Q96JB5 KLF4P1-201ENST00000412782 1185 ntBASIC19.64■□□□□ 0.73
CDK5RAP3Q96JB5 TMEM213-202ENST00000413208 480 ntAPPRIS ALT2 TSL 3 BASIC19.64■□□□□ 0.73
CDK5RAP3Q96JB5 SRP19-202ENST00000445150 833 ntTSL 2 BASIC19.64■□□□□ 0.73
CDK5RAP3Q96JB5 KRT16P4-201ENST00000453883 522 ntBASIC19.64■□□□□ 0.73
CDK5RAP3Q96JB5 AP000344.1-201ENST00000454268 641 ntTSL 5 BASIC19.64■□□□□ 0.73
CDK5RAP3Q96JB5 AP000344.1-202ENST00000457193 586 ntTSL 4 BASIC19.64■□□□□ 0.73
CDK5RAP3Q96JB5 RAP1B-229ENST00000543393 874 ntTSL 3 BASIC19.64■□□□□ 0.73
CDK5RAP3Q96JB5 PRELID1P1-202ENST00000567272 903 ntBASIC19.64■□□□□ 0.73
CDK5RAP3Q96JB5 CTDNEP1-207ENST00000572043 857 ntTSL 3 BASIC19.64■□□□□ 0.73
CDK5RAP3Q96JB5 MIR5100-201ENST00000579544 119 ntBASIC19.64■□□□□ 0.73
CDK5RAP3Q96JB5 LINC00910-203ENST00000587874 544 ntTSL 4 BASIC19.64■□□□□ 0.73
CDK5RAP3Q96JB5 AL591684.3-201ENST00000605187 298 ntBASIC19.64■□□□□ 0.73
CDK5RAP3Q96JB5 IDH3G-201ENST00000217901 1485 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
CDK5RAP3Q96JB5 LCAT-201ENST00000264005 1507 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
CDK5RAP3Q96JB5 HMBS-203ENST00000442944 1548 ntTSL 5 BASIC19.64■□□□□ 0.73
CDK5RAP3Q96JB5 SEMA5B-202ENST00000357599 4792 ntAPPRIS P3 TSL 1 (best) BASIC19.64■□□□□ 0.73
CDK5RAP3Q96JB5 PRX-202ENST00000324001 4855 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
CDK5RAP3Q96JB5 NODAL-201ENST00000287139 1665 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
CDK5RAP3Q96JB5 TMCO1-207ENST00000580248 1735 ntTSL 2 BASIC19.64■□□□□ 0.73
CDK5RAP3Q96JB5 PCBP4-203ENST00000428823 1835 ntTSL 5 BASIC19.64■□□□□ 0.73
CDK5RAP3Q96JB5 C9orf43-202ENST00000374165 2049 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
CDK5RAP3Q96JB5 WDR13-201ENST00000218056 2124 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
CDK5RAP3Q96JB5 COQ6-201ENST00000334571 2118 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
CDK5RAP3Q96JB5 ERBB2-205ENST00000578199 2526 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
CDK5RAP3Q96JB5 PRKCB-202ENST00000321728 2689 ntAPPRIS ALT1 TSL 1 (best) BASIC19.64■□□□□ 0.73
CDK5RAP3Q96JB5 PELI2-201ENST00000267460 5909 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
CDK5RAP3Q96JB5 AK4-207ENST00000545314 6887 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
CDK5RAP3Q96JB5 KDM6B-202ENST00000448097 5422 ntAPPRIS ALT2 TSL 5 BASIC19.63■□□□□ 0.73
CDK5RAP3Q96JB5 PCDHA1-203ENST00000504120 5263 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
CDK5RAP3Q96JB5 PDCD7-201ENST00000204549 2851 ntAPPRIS P2 TSL 1 (best) BASIC19.63■□□□□ 0.73
CDK5RAP3Q96JB5 AC133548.2-201ENST00000568567 2605 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
CDK5RAP3Q96JB5 AC026954.2-202ENST00000575474 2571 ntAPPRIS P5 TSL 5 BASIC19.63■□□□□ 0.73
CDK5RAP3Q96JB5 PNPO-201ENST00000225573 2256 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
CDK5RAP3Q96JB5 AC005498.3-201ENST00000596587 2045 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
CDK5RAP3Q96JB5 AC046185.3-201ENST00000623228 1824 ntBASIC19.63■□□□□ 0.73
CDK5RAP3Q96JB5 COQ9-201ENST00000262507 1677 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
CDK5RAP3Q96JB5 LSP1-201ENST00000311604 1699 ntAPPRIS P4 TSL 1 (best) BASIC19.63■□□□□ 0.73
CDK5RAP3Q96JB5 CELF6-204ENST00000543764 1676 ntTSL 2 BASIC19.63■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 44.1 ms