Protein–RNA interactions for Protein: Q96CF2

CHMP4C, Charged multivesicular body protein 4c, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4CQ96CF2 AC132872.3-201ENST00000620937 629 ntTSL 5 BASIC20.77■□□□□ 0.92
CHMP4CQ96CF2 TTLL8-201ENST00000266182 2505 ntAPPRIS ALT2 TSL 5 BASIC20.77■□□□□ 0.92
CHMP4CQ96CF2 MFSD11-220ENST00000621483 2850 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
CHMP4CQ96CF2 KIZ-211ENST00000619574 1971 ntAPPRIS ALT2 TSL 2 BASIC20.77■□□□□ 0.92
CHMP4CQ96CF2 AC023830.1-201ENST00000569678 1543 ntTSL 2 BASIC20.77■□□□□ 0.92
CHMP4CQ96CF2 AC016396.2-201ENST00000562575 1417 ntBASIC20.77■□□□□ 0.91
CHMP4CQ96CF2 SLC43A1-201ENST00000278426 2598 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
CHMP4CQ96CF2 GRK6-202ENST00000355958 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC20.77■□□□□ 0.91
CHMP4CQ96CF2 AL139099.2-201ENST00000555043 2469 ntTSL 2 BASIC20.77■□□□□ 0.91
CHMP4CQ96CF2 CEP83-AS1-201ENST00000623122 2482 ntBASIC20.77■□□□□ 0.91
CHMP4CQ96CF2 ZNF397-204ENST00000585800 2046 ntTSL 5 BASIC20.77■□□□□ 0.91
CHMP4CQ96CF2 AC242426.3-201ENST00000440377 1571 ntTSL 2 BASIC20.76■□□□□ 0.91
CHMP4CQ96CF2 CACNA1G-206ENST00000416767 4899 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
CHMP4CQ96CF2 COL8A2-202ENST00000397799 4670 ntAPPRIS P1 TSL 5 BASIC20.76■□□□□ 0.91
CHMP4CQ96CF2 SOCS7-201ENST00000612932 7857 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
CHMP4CQ96CF2 ZNF517-201ENST00000359971 2335 ntAPPRIS P1 TSL 4 BASIC20.76■□□□□ 0.91
CHMP4CQ96CF2 KCNQ5-212ENST00000628967 3527 ntTSL 2 BASIC20.76■□□□□ 0.91
CHMP4CQ96CF2 GOLGA7-204ENST00000520817 1984 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
CHMP4CQ96CF2 SLBP-202ENST00000429429 1623 ntTSL 2 BASIC20.76■□□□□ 0.91
CHMP4CQ96CF2 ARNTL-205ENST00000403510 2745 ntTSL 2 BASIC20.76■□□□□ 0.91
CHMP4CQ96CF2 C6orf48-204ENST00000375639 712 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
CHMP4CQ96CF2 COLEC11-207ENST00000404205 1062 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
CHMP4CQ96CF2 METTL21A-205ENST00000426075 1051 ntAPPRIS P1 TSL 2 BASIC20.76■□□□□ 0.91
CHMP4CQ96CF2 TXNRD2-212ENST00000485358 850 ntTSL 2 BASIC20.76■□□□□ 0.91
CHMP4CQ96CF2 COX5A-204ENST00000567270 579 ntTSL 3 BASIC20.76■□□□□ 0.91
CHMP4CQ96CF2 SPAG7-207ENST00000575142 1094 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
CHMP4CQ96CF2 AC005632.4-201ENST00000613759 431 ntTSL 3 BASIC20.76■□□□□ 0.91
CHMP4CQ96CF2 PCDHA8-201ENST00000378123 2616 ntAPPRIS ALT2 BASIC20.76■□□□□ 0.91
CHMP4CQ96CF2 C21orf58-203ENST00000397680 2624 ntAPPRIS ALT2 TSL 2 BASIC20.76■□□□□ 0.91
CHMP4CQ96CF2 ULK3-201ENST00000440863 2623 ntAPPRIS P3 TSL 2 BASIC20.76■□□□□ 0.91
CHMP4CQ96CF2 TXNL4A-201ENST00000269601 3504 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
CHMP4CQ96CF2 C16orf89-202ENST00000472572 1444 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
CHMP4CQ96CF2 ZYG11A-202ENST00000371532 3942 ntTSL 5 BASIC20.76■□□□□ 0.91
CHMP4CQ96CF2 KDM1A-202ENST00000400181 3059 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
CHMP4CQ96CF2 GNE-201ENST00000377902 2565 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
CHMP4CQ96CF2 ETFBKMT-202ENST00000395763 2055 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
CHMP4CQ96CF2 LYPLA2-205ENST00000374514 1810 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
CHMP4CQ96CF2 ANXA8-202ENST00000583448 1971 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
CHMP4CQ96CF2 SRPX-202ENST00000432886 1725 ntTSL 2 BASIC20.75■□□□□ 0.91
CHMP4CQ96CF2 NFKBID-210ENST00000606253 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
CHMP4CQ96CF2 LINC01097-201ENST00000627163 2122 ntTSL 2 BASIC20.75■□□□□ 0.91
CHMP4CQ96CF2 CDCP2-202ENST00000530059 1623 ntAPPRIS ALT2 TSL 5 BASIC20.75■□□□□ 0.91
CHMP4CQ96CF2 PGRMC2-208ENST00000613358 3783 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
CHMP4CQ96CF2 ALDH1A3-201ENST00000329841 3924 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CHMP4CQ96CF2 SIT1-201ENST00000259608 1231 ntAPPRIS P2 TSL 1 (best) BASIC20.75■□□□□ 0.91
CHMP4CQ96CF2 PTRHD1-201ENST00000328379 1105 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CHMP4CQ96CF2 Metazoa_SRP.28-201ENST00000366402 260 ntBASIC20.75■□□□□ 0.91
CHMP4CQ96CF2 MRPS18A-201ENST00000372116 785 ntTSL 2 BASIC20.75■□□□□ 0.91
CHMP4CQ96CF2 ROMO1-203ENST00000374077 422 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CHMP4CQ96CF2 SERF1B-202ENST00000380751 703 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CHMP4CQ96CF2 GGT1-207ENST00000404532 853 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
CHMP4CQ96CF2 ZBED5-AS1-202ENST00000529014 771 ntTSL 5 BASIC20.75■□□□□ 0.91
CHMP4CQ96CF2 AC012645.3-201ENST00000568506 470 ntTSL 3 BASIC20.75■□□□□ 0.91
CHMP4CQ96CF2 PAM16-208ENST00000573553 722 ntTSL 2 BASIC20.75■□□□□ 0.91
CHMP4CQ96CF2 FAM220A-205ENST00000578372 207 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CHMP4CQ96CF2 ABHD17A-204ENST00000590661 1079 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
CHMP4CQ96CF2 AC005944.1-201ENST00000592758 564 ntTSL 3 BASIC20.75■□□□□ 0.91
CHMP4CQ96CF2 AC114488.2-214ENST00000609033 813 ntTSL 5 BASIC20.75■□□□□ 0.91
CHMP4CQ96CF2 PTPN11-207ENST00000639857 801 ntTSL 5 BASIC20.75■□□□□ 0.91
CHMP4CQ96CF2 P2RX6-201ENST00000401443 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
CHMP4CQ96CF2 IFFO1-201ENST00000336604 2686 ntAPPRIS P3 TSL 1 (best) BASIC20.75■□□□□ 0.91
CHMP4CQ96CF2 GPD2-201ENST00000310454 6041 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CHMP4CQ96CF2 CXXC1P1-201ENST00000483225 1897 ntTSL 2 BASIC20.75■□□□□ 0.91
CHMP4CQ96CF2 SDR39U1-206ENST00000553930 1325 ntTSL 5 BASIC20.75■□□□□ 0.91
CHMP4CQ96CF2 TNFSF14-202ENST00000599359 1476 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CHMP4CQ96CF2 ZNF618-203ENST00000374126 3018 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
CHMP4CQ96CF2 NRN1-201ENST00000244766 1624 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CHMP4CQ96CF2 CCDC78-201ENST00000293889 1611 ntAPPRIS P2 TSL 1 (best) BASIC20.75■□□□□ 0.91
CHMP4CQ96CF2 TOM1L2-203ENST00000395739 1766 ntTSL 2 BASIC20.74■□□□□ 0.91
CHMP4CQ96CF2 REXO1L11P-201ENST00000620964 1927 ntBASIC20.74■□□□□ 0.91
CHMP4CQ96CF2 FAM237A-203ENST00000543490 1376 ntAPPRIS P1 TSL 5 BASIC20.74■□□□□ 0.91
CHMP4CQ96CF2 C11orf68-203ENST00000530188 1528 ntAPPRIS ALT2 BASIC20.74■□□□□ 0.91
CHMP4CQ96CF2 CAMK2G-205ENST00000372765 1822 ntTSL 5 BASIC20.74■□□□□ 0.91
CHMP4CQ96CF2 TMEM237-213ENST00000621467 1824 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
CHMP4CQ96CF2 ZSWIM8-213ENST00000603114 5919 ntTSL 5 BASIC20.74■□□□□ 0.91
CHMP4CQ96CF2 AC011270.2-201ENST00000624293 2550 ntBASIC20.74■□□□□ 0.91
CHMP4CQ96CF2 ADPGK-AS1-201ENST00000563592 2730 ntTSL 2 BASIC20.74■□□□□ 0.91
CHMP4CQ96CF2 ACTN4-201ENST00000252699 4963 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
CHMP4CQ96CF2 ADAM23-201ENST00000264377 6330 ntAPPRIS P2 TSL 1 (best) BASIC20.74■□□□□ 0.91
CHMP4CQ96CF2 PSMA7-203ENST00000370873 996 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
CHMP4CQ96CF2 HCCS-202ENST00000380762 1072 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
CHMP4CQ96CF2 AC092725.1-201ENST00000565783 499 ntTSL 4 BASIC20.74■□□□□ 0.91
CHMP4CQ96CF2 GZMM-202ENST00000592501 941 ntTSL 3 BASIC20.74■□□□□ 0.91
CHMP4CQ96CF2 AC008878.4-201ENST00000602083 293 ntTSL 5 BASIC20.74■□□□□ 0.91
CHMP4CQ96CF2 AL049840.3-201ENST00000602669 611 ntBASIC20.74■□□□□ 0.91
CHMP4CQ96CF2 ANKMY2-206ENST00000628652 1270 ntTSL 5 BASIC20.74■□□□□ 0.91
CHMP4CQ96CF2 ABBA01031661.1-201ENST00000634362 1253 ntBASIC20.74■□□□□ 0.91
CHMP4CQ96CF2 COL4A2-201ENST00000360467 6281 ntAPPRIS P1 TSL 5 BASIC20.74■□□□□ 0.91
CHMP4CQ96CF2 GAL3ST1-201ENST00000338911 1782 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
CHMP4CQ96CF2 AC105001.2-201ENST00000554914 1753 ntAPPRIS P1 TSL 2 BASIC20.74■□□□□ 0.91
CHMP4CQ96CF2 TUBGCP3-202ENST00000375669 2723 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
CHMP4CQ96CF2 CDH6-205ENST00000514738 2569 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
CHMP4CQ96CF2 SAR1B-208ENST00000507419 2287 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
CHMP4CQ96CF2 TJP1-212ENST00000614355 6977 ntAPPRIS ALT2 TSL 5 BASIC20.73■□□□□ 0.91
CHMP4CQ96CF2 SNAP23-201ENST00000249647 2687 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CHMP4CQ96CF2 CXADR-201ENST00000284878 6254 ntAPPRIS P3 TSL 1 (best) BASIC20.73■□□□□ 0.91
CHMP4CQ96CF2 NOTCH2NL-201ENST00000362074 1874 ntAPPRIS P2 TSL 1 (best) BASIC20.73■□□□□ 0.91
CHMP4CQ96CF2 ELN-202ENST00000320399 2274 ntAPPRIS ALT2 TSL 5 BASIC20.73■□□□□ 0.91
CHMP4CQ96CF2 ADO-201ENST00000373783 3627 ntAPPRIS P1 BASIC20.73■□□□□ 0.91
CHMP4CQ96CF2 SZT2-202ENST00000372450 1191 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 52.8 ms