Protein–RNA interactions for Protein: Q8TF72

SHROOM3, Protein Shroom3, humanhuman

Predictions only

Length 1,996 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3Q8TF72 GTPBP8-203ENST00000383678 1360 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
SHROOM3Q8TF72 ZSCAN10-202ENST00000538082 2350 ntTSL 4 BASIC17.71■□□□□ 0.43
SHROOM3Q8TF72 HSPA8-224ENST00000534624 2463 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
SHROOM3Q8TF72 PHYH-202ENST00000396913 1732 ntTSL 5 BASIC17.71■□□□□ 0.43
SHROOM3Q8TF72 OSBPL1A-204ENST00000399443 3317 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
SHROOM3Q8TF72 MMP9-201ENST00000372330 2336 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
SHROOM3Q8TF72 ARHGEF4-206ENST00000428230 2172 ntTSL 5 BASIC17.71■□□□□ 0.43
SHROOM3Q8TF72 ADAD1-203ENST00000388725 1918 ntTSL 2 BASIC17.71■□□□□ 0.43
SHROOM3Q8TF72 SYNE3-202ENST00000553340 2615 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
SHROOM3Q8TF72 FICD-204ENST00000552695 3347 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
SHROOM3Q8TF72 FGFR1-214ENST00000447712 5900 ntAPPRIS P3 TSL 1 (best) BASIC17.71■□□□□ 0.43
SHROOM3Q8TF72 WWTR1-201ENST00000360632 2103 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
SHROOM3Q8TF72 DNM1-216ENST00000634267 2909 ntTSL 5 BASIC17.71■□□□□ 0.43
SHROOM3Q8TF72 AC003669.1-201ENST00000334569 611 ntBASIC17.71■□□□□ 0.43
SHROOM3Q8TF72 COX10-202ENST00000429152 875 ntTSL 2 BASIC17.71■□□□□ 0.43
SHROOM3Q8TF72 B4GALT1-AS1-202ENST00000442432 843 ntTSL 2 BASIC17.71■□□□□ 0.43
SHROOM3Q8TF72 LAT-205ENST00000454369 1262 ntAPPRIS ALT2 TSL 5 BASIC17.71■□□□□ 0.43
SHROOM3Q8TF72 AC092183.1-201ENST00000469884 875 ntBASIC17.71■□□□□ 0.43
SHROOM3Q8TF72 MTHFSD-203ENST00000543303 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
SHROOM3Q8TF72 AC008567.3-202ENST00000619671 859 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
SHROOM3Q8TF72 MTHFSD-220ENST00000634347 1207 ntAPPRIS P3 TSL 1 (best) BASIC17.71■□□□□ 0.43
SHROOM3Q8TF72 PCMTD1-206ENST00000521344 1712 ntTSL 3 BASIC17.71■□□□□ 0.43
SHROOM3Q8TF72 CPZ-203ENST00000382480 2538 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
SHROOM3Q8TF72 NMD3-202ENST00000460469 3061 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
SHROOM3Q8TF72 RIMBP3-201ENST00000619918 6105 ntAPPRIS P1 BASIC17.71■□□□□ 0.43
SHROOM3Q8TF72 GOLGA7-202ENST00000405786 1903 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
SHROOM3Q8TF72 F12-201ENST00000253496 2049 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.42
SHROOM3Q8TF72 RAI2-203ENST00000415486 2037 ntTSL 2 BASIC17.71■□□□□ 0.42
SHROOM3Q8TF72 MARCH8-201ENST00000319836 5272 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.42
SHROOM3Q8TF72 ZBTB44-201ENST00000357899 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
SHROOM3Q8TF72 PRDM5-203ENST00000428209 2338 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
SHROOM3Q8TF72 HLA-A-204ENST00000396634 1868 ntAPPRIS P1 BASIC17.7■□□□□ 0.42
SHROOM3Q8TF72 ELF2-207ENST00000510408 1965 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
SHROOM3Q8TF72 IL1R1-205ENST00000410023 5143 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
SHROOM3Q8TF72 GHRHR-205ENST00000409904 1613 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
SHROOM3Q8TF72 LPAR5-202ENST00000431922 2695 ntAPPRIS P1 TSL 2 BASIC17.7■□□□□ 0.42
SHROOM3Q8TF72 CCDC134-201ENST00000255784 1270 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
SHROOM3Q8TF72 ZNHIT1-201ENST00000305105 1225 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
SHROOM3Q8TF72 CREM-211ENST00000374726 1207 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
SHROOM3Q8TF72 MSRB1-202ENST00000399753 847 ntTSL 3 BASIC17.7■□□□□ 0.42
SHROOM3Q8TF72 XXYLT1-205ENST00000437101 2149 ntTSL 2 BASIC17.7■□□□□ 0.42
SHROOM3Q8TF72 KRT73-AS1-202ENST00000551089 563 ntTSL 4 BASIC17.7■□□□□ 0.42
SHROOM3Q8TF72 ACYP2-209ENST00000607452 831 ntTSL 2 BASIC17.7■□□□□ 0.42
SHROOM3Q8TF72 AL773604.1-201ENST00000617417 272 ntBASIC17.7■□□□□ 0.42
SHROOM3Q8TF72 NOTCH3-201ENST00000263388 8666 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
SHROOM3Q8TF72 LRFN3-201ENST00000246529 2513 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
SHROOM3Q8TF72 PAPD5-203ENST00000561678 2916 ntTSL 5 BASIC17.7■□□□□ 0.42
SHROOM3Q8TF72 PIP5K1C-205ENST00000589578 2933 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
SHROOM3Q8TF72 PARD3-201ENST00000340077 3518 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
SHROOM3Q8TF72 MARK1-202ENST00000366918 5169 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
SHROOM3Q8TF72 AL590787.1-201ENST00000568856 1315 ntBASIC17.7■□□□□ 0.42
SHROOM3Q8TF72 MAP4K2-202ENST00000377350 2931 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
SHROOM3Q8TF72 CLEC18A-202ENST00000393701 1955 ntAPPRIS P2 TSL 1 (best) BASIC17.7■□□□□ 0.42
SHROOM3Q8TF72 CLEC18C-203ENST00000541793 1955 ntAPPRIS P2 TSL 1 (best) BASIC17.7■□□□□ 0.42
SHROOM3Q8TF72 KCNS2-201ENST00000287042 5219 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
SHROOM3Q8TF72 NPLOC4-201ENST00000331134 4415 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
SHROOM3Q8TF72 LTBP3-202ENST00000322147 4046 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
SHROOM3Q8TF72 AL355310.2-201ENST00000369843 688 ntTSL 3 BASIC17.7■□□□□ 0.42
SHROOM3Q8TF72 UPK3A-202ENST00000396082 627 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
SHROOM3Q8TF72 RNA5SP419-201ENST00000515908 135 ntBASIC17.7■□□□□ 0.42
SHROOM3Q8TF72 DYNLL1-204ENST00000548214 616 ntTSL 2 BASIC17.7■□□□□ 0.42
SHROOM3Q8TF72 CTDNEP1-207ENST00000572043 857 ntTSL 3 BASIC17.7■□□□□ 0.42
SHROOM3Q8TF72 ARNTL-205ENST00000403510 2745 ntTSL 2 BASIC17.69■□□□□ 0.42
SHROOM3Q8TF72 DAGLB-202ENST00000425398 2044 ntTSL 2 BASIC17.69■□□□□ 0.42
SHROOM3Q8TF72 AC093525.9-201ENST00000624961 1746 ntBASIC17.69■□□□□ 0.42
SHROOM3Q8TF72 CSF1-204ENST00000369802 2484 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
SHROOM3Q8TF72 AIRN-201ENST00000601203 4374 ntBASIC17.69■□□□□ 0.42
SHROOM3Q8TF72 TBXAS1-206ENST00000425687 2080 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
SHROOM3Q8TF72 FGFR4-203ENST00000393648 2733 ntAPPRIS ALT2 TSL 2 BASIC17.69■□□□□ 0.42
SHROOM3Q8TF72 GALNT11-205ENST00000430044 2727 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
SHROOM3Q8TF72 PARVG-205ENST00000422871 3462 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
SHROOM3Q8TF72 PRMT5-204ENST00000397441 2418 ntTSL 2 BASIC17.69■□□□□ 0.42
SHROOM3Q8TF72 PLEKHG6-203ENST00000396988 2963 ntAPPRIS P1 TSL 2 BASIC17.69■□□□□ 0.42
SHROOM3Q8TF72 KCNQ2-215ENST00000629241 2853 ntTSL 5 BASIC17.69■□□□□ 0.42
SHROOM3Q8TF72 AC254629.1-202ENST00000618276 2112 ntTSL 2 BASIC17.69■□□□□ 0.42
SHROOM3Q8TF72 SMAD4-201ENST00000342988 8769 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
SHROOM3Q8TF72 DYDC2-202ENST00000372197 2022 ntAPPRIS P3 TSL 1 (best) BASIC17.69■□□□□ 0.42
SHROOM3Q8TF72 HNRNPD-201ENST00000313899 3033 ntAPPRIS P4 TSL 1 (best) BASIC17.69■□□□□ 0.42
SHROOM3Q8TF72 GOSR2-201ENST00000225567 1245 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
SHROOM3Q8TF72 TYMS-202ENST00000323250 693 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
SHROOM3Q8TF72 RBM17P3-201ENST00000417687 1192 ntBASIC17.69■□□□□ 0.42
SHROOM3Q8TF72 POLD2P1-201ENST00000511220 997 ntBASIC17.69■□□□□ 0.42
SHROOM3Q8TF72 AC034243.1-201ENST00000520838 587 ntTSL 2 BASIC17.69■□□□□ 0.42
SHROOM3Q8TF72 NKAPP1-205ENST00000585790 367 ntBASIC17.69■□□□□ 0.42
SHROOM3Q8TF72 FMR1-205ENST00000370475 4308 ntAPPRIS P3 TSL 1 (best) BASIC17.69■□□□□ 0.42
SHROOM3Q8TF72 AC023830.1-201ENST00000569678 1543 ntTSL 2 BASIC17.69■□□□□ 0.42
SHROOM3Q8TF72 CLDN15-208ENST00000611078 1509 ntTSL 5 BASIC17.69■□□□□ 0.42
SHROOM3Q8TF72 KXD1-201ENST00000222307 1426 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
SHROOM3Q8TF72 MSLNL-201ENST00000442466 2109 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
SHROOM3Q8TF72 SLC3A2-201ENST00000338663 1904 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
SHROOM3Q8TF72 UBE3D-203ENST00000369747 1917 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
SHROOM3Q8TF72 SELENBP1-204ENST00000426705 1928 ntTSL 2 BASIC17.68■□□□□ 0.42
SHROOM3Q8TF72 DCLK2-204ENST00000506325 2298 ntAPPRIS ALT2 TSL 5 BASIC17.68■□□□□ 0.42
SHROOM3Q8TF72 SHISA7-201ENST00000376325 6033 ntAPPRIS P2 TSL 2 BASIC17.68■□□□□ 0.42
SHROOM3Q8TF72 CAMK2G-205ENST00000372765 1822 ntTSL 5 BASIC17.68■□□□□ 0.42
SHROOM3Q8TF72 CLEC18B-206ENST00000620745 1847 ntTSL 5 BASIC17.68■□□□□ 0.42
SHROOM3Q8TF72 RBCK1-202ENST00000356286 2774 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
SHROOM3Q8TF72 PTTG1-202ENST00000393964 1070 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
SHROOM3Q8TF72 POM121L12-201ENST00000408890 1283 ntAPPRIS P1 BASIC17.68■□□□□ 0.42
SHROOM3Q8TF72 DMKN-206ENST00000418261 1257 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 27.9 ms