Protein–RNA interactions for Protein: Q8N1M1

BEST3, Bestrophin-3, humanhuman

Predictions only

Length 668 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BEST3Q8N1M1 EGFL6-202ENST00000380602 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
BEST3Q8N1M1 TM2D1-201ENST00000294613 1250 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
BEST3Q8N1M1 COLEC11-202ENST00000349077 1259 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
BEST3Q8N1M1 OPN1LW-201ENST00000369951 1261 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
BEST3Q8N1M1 PSMA7-201ENST00000370858 925 ntTSL 2 BASIC16.18■□□□□ 0.18
BEST3Q8N1M1 TM2D1-204ENST00000371180 1248 ntTSL 5 BASIC16.18■□□□□ 0.18
BEST3Q8N1M1 MIEF2-202ENST00000395703 718 ntTSL 3 BASIC16.18■□□□□ 0.18
BEST3Q8N1M1 KLF4P1-201ENST00000412782 1185 ntBASIC16.18■□□□□ 0.18
BEST3Q8N1M1 NAA60-217ENST00000572942 1089 ntTSL 2 BASIC16.18■□□□□ 0.18
BEST3Q8N1M1 AC109462.3-201ENST00000573934 613 ntBASIC16.18■□□□□ 0.18
BEST3Q8N1M1 PIN1-206ENST00000587625 878 ntTSL 2 BASIC16.18■□□□□ 0.18
BEST3Q8N1M1 FAM71E1-202ENST00000595790 1225 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
BEST3Q8N1M1 TM2D1-212ENST00000606498 969 ntAPPRIS P1 TSL 5 BASIC16.18■□□□□ 0.18
BEST3Q8N1M1 AL022328.2-201ENST00000608016 640 ntTSL 3 BASIC16.18■□□□□ 0.18
BEST3Q8N1M1 AC019129.2-201ENST00000609837 1235 ntBASIC16.18■□□□□ 0.18
BEST3Q8N1M1 NXNL2-205ENST00000618633 739 ntTSL 5 BASIC16.18■□□□□ 0.18
BEST3Q8N1M1 FPGS-201ENST00000373225 2278 ntTSL 2 BASIC16.18■□□□□ 0.18
BEST3Q8N1M1 LZTS1-203ENST00000522290 1614 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
BEST3Q8N1M1 PEX13-204ENST00000444100 1533 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
BEST3Q8N1M1 FUT8-AS1-201ENST00000621019 1521 ntBASIC16.18■□□□□ 0.18
BEST3Q8N1M1 TES-201ENST00000358204 2782 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
BEST3Q8N1M1 RAVER2-202ENST00000371072 4362 ntAPPRIS P2 TSL 1 (best) BASIC16.18■□□□□ 0.18
BEST3Q8N1M1 DLGAP1-222ENST00000639615 1898 ntTSL 5 BASIC16.18■□□□□ 0.18
BEST3Q8N1M1 VHL-202ENST00000345392 2696 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
BEST3Q8N1M1 ACTN4-202ENST00000390009 2102 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
BEST3Q8N1M1 LHX8-201ENST00000294638 2373 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
BEST3Q8N1M1 AC138969.1-205ENST00000381497 1552 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
BEST3Q8N1M1 ABALON-201ENST00000629058 1903 ntBASIC16.17■□□□□ 0.18
BEST3Q8N1M1 APOLD1-202ENST00000356591 4646 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
BEST3Q8N1M1 PEX16-201ENST00000241041 1479 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
BEST3Q8N1M1 GPN3-202ENST00000537466 1491 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
BEST3Q8N1M1 MAP3K6-202ENST00000374040 4309 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
BEST3Q8N1M1 HYAL1-204ENST00000395144 2081 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
BEST3Q8N1M1 FDXR-203ENST00000420580 1705 ntTSL 2 BASIC16.17■□□□□ 0.18
BEST3Q8N1M1 QPRT-202ENST00000395384 2343 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
BEST3Q8N1M1 PTEN-201ENST00000371953 9027 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
BEST3Q8N1M1 RGS11-203ENST00000359740 1371 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
BEST3Q8N1M1 IGF2-205ENST00000416167 5585 ntAPPRIS P2 TSL 1 (best) BASIC16.17■□□□□ 0.18
BEST3Q8N1M1 MARVELD3-202ENST00000299952 2214 ntAPPRIS ALT2 TSL 2 BASIC16.17■□□□□ 0.18
BEST3Q8N1M1 MRPL10-203ENST00000414011 1622 ntTSL 3 BASIC16.17■□□□□ 0.18
BEST3Q8N1M1 MEST-201ENST00000223215 2465 ntAPPRIS P4 TSL 1 (best) BASIC16.17■□□□□ 0.18
BEST3Q8N1M1 NTRK2-207ENST00000376214 5608 ntAPPRIS P3 TSL 5 BASIC16.17■□□□□ 0.18
BEST3Q8N1M1 MSRB1-202ENST00000399753 847 ntTSL 3 BASIC16.17■□□□□ 0.18
BEST3Q8N1M1 CENPM-203ENST00000402338 1002 ntTSL 2 BASIC16.17■□□□□ 0.18
BEST3Q8N1M1 VAV2-203ENST00000406606 4691 ntAPPRIS P2 TSL 1 (best) BASIC16.17■□□□□ 0.18
BEST3Q8N1M1 AC064807.1-202ENST00000423716 936 ntTSL 2 BASIC16.17■□□□□ 0.18
BEST3Q8N1M1 NDUFB2-208ENST00000471136 499 ntTSL 3 BASIC16.17■□□□□ 0.18
BEST3Q8N1M1 KNCN-203ENST00000481882 1037 ntAPPRIS ALT2 TSL 5 BASIC16.17■□□□□ 0.18
BEST3Q8N1M1 AC009567.1-201ENST00000515071 525 ntTSL 4 BASIC16.17■□□□□ 0.18
BEST3Q8N1M1 CD63-204ENST00000546939 779 ntTSL 3 BASIC16.17■□□□□ 0.18
BEST3Q8N1M1 RPS29-206ENST00000557111 488 ntTSL 2 BASIC16.17■□□□□ 0.18
BEST3Q8N1M1 AC145285.3-201ENST00000564603 959 ntBASIC16.17■□□□□ 0.18
BEST3Q8N1M1 CYGB-205ENST00000590175 830 ntTSL 3 BASIC16.17■□□□□ 0.18
BEST3Q8N1M1 COPE-211ENST00000600932 1144 ntTSL 5 BASIC16.17■□□□□ 0.18
BEST3Q8N1M1 Z94160.2-201ENST00000609322 910 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
BEST3Q8N1M1 GPC2-201ENST00000292377 2532 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
BEST3Q8N1M1 SLC8A3-202ENST00000356921 5250 ntAPPRIS P3 TSL 1 (best) BASIC16.17■□□□□ 0.18
BEST3Q8N1M1 SLC2A8-202ENST00000373360 1937 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
BEST3Q8N1M1 REPS2-201ENST00000303843 7771 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
BEST3Q8N1M1 CDKN1B-201ENST00000228872 2657 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
BEST3Q8N1M1 ZBTB7C-201ENST00000535628 4818 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
BEST3Q8N1M1 KIF13B-206ENST00000524189 8745 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
BEST3Q8N1M1 PSRC1-205ENST00000409138 1826 ntTSL 2 BASIC16.17■□□□□ 0.18
BEST3Q8N1M1 RNPS1-205ENST00000561718 1806 ntTSL 3 BASIC16.17■□□□□ 0.18
BEST3Q8N1M1 ATG3-201ENST00000283290 1570 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
BEST3Q8N1M1 FIP1L1-207ENST00000507922 1335 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
BEST3Q8N1M1 EMC8-201ENST00000253457 1962 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
BEST3Q8N1M1 CACNA1A-253ENST00000637927 6847 ntAPPRIS ALT2 TSL 5 BASIC16.16■□□□□ 0.18
BEST3Q8N1M1 ULK3-220ENST00000569437 2611 ntAPPRIS ALT1 TSL 1 (best) BASIC16.16■□□□□ 0.18
BEST3Q8N1M1 NCOA6-207ENST00000616167 3271 ntAPPRIS ALT2 TSL 5 BASIC16.16■□□□□ 0.18
BEST3Q8N1M1 GABRB1-201ENST00000295454 2143 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
BEST3Q8N1M1 HADHB-208ENST00000537713 2142 ntTSL 2 BASIC16.16■□□□□ 0.18
BEST3Q8N1M1 MAPRE3-201ENST00000233121 1892 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
BEST3Q8N1M1 DCAF8-218ENST00000610139 1607 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
BEST3Q8N1M1 AC148477.5-201ENST00000625164 1645 ntBASIC16.16■□□□□ 0.18
BEST3Q8N1M1 RXRB-202ENST00000374685 2846 ntAPPRIS ALT1 TSL 1 (best) BASIC16.16■□□□□ 0.18
BEST3Q8N1M1 PCSK5-202ENST00000376767 2845 ntTSL 2 BASIC16.16■□□□□ 0.18
BEST3Q8N1M1 FLJ13224-201ENST00000313737 1514 ntBASIC16.16■□□□□ 0.18
BEST3Q8N1M1 CLDN15-208ENST00000611078 1509 ntTSL 5 BASIC16.16■□□□□ 0.18
BEST3Q8N1M1 FAM234A-202ENST00000301679 1936 ntTSL 2 BASIC16.16■□□□□ 0.18
BEST3Q8N1M1 C12orf65-202ENST00000366329 1901 ntAPPRIS P2 TSL 2 BASIC16.16■□□□□ 0.18
BEST3Q8N1M1 DTX3-204ENST00000548804 2067 ntAPPRIS P3 TSL 5 BASIC16.16■□□□□ 0.18
BEST3Q8N1M1 ZAR1L-201ENST00000345108 1103 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
BEST3Q8N1M1 AL355310.2-201ENST00000369843 688 ntTSL 3 BASIC16.16■□□□□ 0.18
BEST3Q8N1M1 CAPG-203ENST00000409670 1183 ntAPPRIS P1 TSL 5 BASIC16.16■□□□□ 0.18
BEST3Q8N1M1 PRYP5-201ENST00000451909 266 ntBASIC16.16■□□□□ 0.18
BEST3Q8N1M1 RNA5SP415-201ENST00000517246 115 ntBASIC16.16■□□□□ 0.18
BEST3Q8N1M1 MIR22HG-204ENST00000571595 767 ntTSL 5 BASIC16.16■□□□□ 0.18
BEST3Q8N1M1 NUTM2B-AS1-211ENST00000601369 1233 ntTSL 2 BASIC16.16■□□□□ 0.18
BEST3Q8N1M1 TERC-201ENST00000602385 541 ntBASIC16.16■□□□□ 0.18
BEST3Q8N1M1 PARD3-205ENST00000374773 3420 ntTSL 5 BASIC16.16■□□□□ 0.18
BEST3Q8N1M1 PSTPIP1-201ENST00000379595 1840 ntAPPRIS ALT1 TSL 5 BASIC16.16■□□□□ 0.18
BEST3Q8N1M1 PANX1-201ENST00000227638 2769 ntAPPRIS P2 TSL 1 (best) BASIC16.16■□□□□ 0.18
BEST3Q8N1M1 SH2D3C-203ENST00000373277 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
BEST3Q8N1M1 ACTRT2-201ENST00000378404 1421 ntAPPRIS P1 BASIC16.16■□□□□ 0.18
BEST3Q8N1M1 BCS1L-202ENST00000392109 1583 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
BEST3Q8N1M1 BCS1L-204ENST00000392111 1584 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
BEST3Q8N1M1 UCHL5-206ENST00000367455 5327 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
BEST3Q8N1M1 NKIRAS1-207ENST00000437230 1898 ntAPPRIS ALT1 TSL 5 BASIC16.16■□□□□ 0.18
BEST3Q8N1M1 WBP2-219ENST00000626827 1867 ntTSL 5 BASIC16.16■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 41.4 ms