Protein–RNA interactions for Protein: Q8IYX3

CCDC116, Coiled-coil domain-containing protein 116, humanhuman

Predictions only

Length 515 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC116Q8IYX3 KCNQ1-201ENST00000155840 3245 ntAPPRIS P2 TSL 1 (best) BASIC16.43■□□□□ 0.22
CCDC116Q8IYX3 SCRIB-203ENST00000377533 5108 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
CCDC116Q8IYX3 PODXL-202ENST00000378555 2105 ntAPPRIS P3 TSL 1 (best) BASIC16.43■□□□□ 0.22
CCDC116Q8IYX3 TMPRSS5-207ENST00000540540 2001 ntTSL 2 BASIC16.43■□□□□ 0.22
CCDC116Q8IYX3 SLC7A9-202ENST00000587772 1568 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
CCDC116Q8IYX3 GXYLT2-201ENST00000389617 3260 ntAPPRIS P1 TSL 5 BASIC16.43■□□□□ 0.22
CCDC116Q8IYX3 FENDRR-206ENST00000599749 2843 ntTSL 3 BASIC16.43■□□□□ 0.22
CCDC116Q8IYX3 ADAD1-203ENST00000388725 1918 ntTSL 2 BASIC16.43■□□□□ 0.22
CCDC116Q8IYX3 HSPA1A-202ENST00000608703 1909 ntTSL 2 BASIC16.43■□□□□ 0.22
CCDC116Q8IYX3 AL353593.2-201ENST00000602529 1483 ntBASIC16.43■□□□□ 0.22
CCDC116Q8IYX3 PRDM5-212ENST00000515109 2259 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
CCDC116Q8IYX3 IFFO1-211ENST00000615885 2775 ntTSL 5 BASIC16.43■□□□□ 0.22
CCDC116Q8IYX3 TCEAL3-201ENST00000243286 1124 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
CCDC116Q8IYX3 UBE2C-204ENST00000356455 850 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
CCDC116Q8IYX3 CTNS-203ENST00000399306 803 ntTSL 3 BASIC16.43■□□□□ 0.22
CCDC116Q8IYX3 GGT1-204ENST00000401885 968 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
CCDC116Q8IYX3 ICAM2-203ENST00000449662 1221 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
CCDC116Q8IYX3 ERCC5-207ENST00000535557 1125 ntTSL 5 BASIC16.43■□□□□ 0.22
CCDC116Q8IYX3 C19orf25-210ENST00000591027 574 ntTSL 4 BASIC16.43■□□□□ 0.22
CCDC116Q8IYX3 LCE1E-203ENST00000619588 267 ntAPPRIS ALT2 TSL 5 BASIC16.43■□□□□ 0.22
CCDC116Q8IYX3 HNF1B-206ENST00000620125 1103 ntTSL 5 BASIC16.43■□□□□ 0.22
CCDC116Q8IYX3 PPP3CA-201ENST00000323055 4519 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
CCDC116Q8IYX3 GMDS-AS1-201ENST00000456943 2308 ntTSL 2 BASIC16.43■□□□□ 0.22
CCDC116Q8IYX3 HMBS-203ENST00000442944 1548 ntTSL 5 BASIC16.43■□□□□ 0.22
CCDC116Q8IYX3 FUT8-AS1-201ENST00000621019 1521 ntBASIC16.43■□□□□ 0.22
CCDC116Q8IYX3 NOL4L-211ENST00000621426 6577 ntAPPRIS P2 TSL 5 BASIC16.43■□□□□ 0.22
CCDC116Q8IYX3 FICD-204ENST00000552695 3347 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
CCDC116Q8IYX3 ZADH2-201ENST00000322342 7732 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
CCDC116Q8IYX3 DDX28-201ENST00000332395 2169 ntAPPRIS P1 BASIC16.43■□□□□ 0.22
CCDC116Q8IYX3 AP001094.4-201ENST00000579008 2176 ntBASIC16.43■□□□□ 0.22
CCDC116Q8IYX3 KIAA1324L-207ENST00000444627 3527 ntTSL 5 BASIC16.42■□□□□ 0.22
CCDC116Q8IYX3 PTP4A1-201ENST00000370651 5088 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
CCDC116Q8IYX3 ACTN4-201ENST00000252699 4963 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
CCDC116Q8IYX3 WDR13-202ENST00000376729 5469 ntAPPRIS P1 TSL 5 BASIC16.42■□□□□ 0.22
CCDC116Q8IYX3 TINF2-201ENST00000267415 1852 ntAPPRIS P4 TSL 1 (best) BASIC16.42■□□□□ 0.22
CCDC116Q8IYX3 DENND5B-201ENST00000354285 3132 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
CCDC116Q8IYX3 FN1-208ENST00000426059 2388 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
CCDC116Q8IYX3 AMMECR1-201ENST00000262844 5504 ntAPPRIS P3 TSL 1 (best) BASIC16.42■□□□□ 0.22
CCDC116Q8IYX3 LRFN3-201ENST00000246529 2513 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
CCDC116Q8IYX3 DIABLO-206ENST00000443649 2250 ntAPPRIS P1 TSL 2 BASIC16.42■□□□□ 0.22
CCDC116Q8IYX3 LOXL3-205ENST00000409986 2005 ntTSL 2 BASIC16.42■□□□□ 0.22
CCDC116Q8IYX3 NSUN5P2-201ENST00000388955 1789 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
CCDC116Q8IYX3 NXPH2-201ENST00000272641 1052 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
CCDC116Q8IYX3 AKR7L-201ENST00000420396 1240 ntAPPRIS ALT2 TSL 5 BASIC16.42■□□□□ 0.22
CCDC116Q8IYX3 NKTR-203ENST00000442970 646 ntTSL 2 BASIC16.42■□□□□ 0.22
CCDC116Q8IYX3 AK2-204ENST00000467905 880 ntAPPRIS ALT1 TSL 2 BASIC16.42■□□□□ 0.22
CCDC116Q8IYX3 EIF5A2-203ENST00000474096 570 ntTSL 4 BASIC16.42■□□□□ 0.22
CCDC116Q8IYX3 FAM53C-211ENST00000513056 923 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
CCDC116Q8IYX3 LINC02237-202ENST00000521904 477 ntTSL 3 BASIC16.42■□□□□ 0.22
CCDC116Q8IYX3 ANKRD34C-AS1-205ENST00000560452 576 ntTSL 4 BASIC16.42■□□□□ 0.22
CCDC116Q8IYX3 YPEL3-204ENST00000563788 730 ntAPPRIS P1 TSL 3 BASIC16.42■□□□□ 0.22
CCDC116Q8IYX3 COX5A-204ENST00000567270 579 ntTSL 3 BASIC16.42■□□□□ 0.22
CCDC116Q8IYX3 AC087645.2-201ENST00000586321 799 ntTSL 3 BASIC16.42■□□□□ 0.22
CCDC116Q8IYX3 AD001527.2-201ENST00000622994 785 ntBASIC16.42■□□□□ 0.22
CCDC116Q8IYX3 AL356309.3-201ENST00000624132 1934 ntBASIC16.42■□□□□ 0.22
CCDC116Q8IYX3 RPL13P5-202ENST00000412023 1438 ntTSL 2 BASIC16.42■□□□□ 0.22
CCDC116Q8IYX3 VPS51-201ENST00000279281 2714 ntAPPRIS P2 TSL 1 (best) BASIC16.42■□□□□ 0.22
CCDC116Q8IYX3 AL355315.1-201ENST00000370649 1848 ntAPPRIS P1 TSL 2 BASIC16.42■□□□□ 0.22
CCDC116Q8IYX3 CXXC1-212ENST00000589940 2242 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
CCDC116Q8IYX3 SEMA3B-204ENST00000433753 2755 ntAPPRIS ALT1 TSL 1 (best) BASIC16.42■□□□□ 0.22
CCDC116Q8IYX3 CLDN6-202ENST00000396925 1739 ntAPPRIS P1 TSL 5 BASIC16.42■□□□□ 0.22
CCDC116Q8IYX3 NLRP6-203ENST00000534750 2936 ntAPPRIS ALT2 TSL 2 BASIC16.42■□□□□ 0.22
CCDC116Q8IYX3 PABPC1L-201ENST00000217073 1851 ntAPPRIS P1 TSL 5 BASIC16.42■□□□□ 0.22
CCDC116Q8IYX3 TRAPPC11-201ENST00000334690 4552 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CCDC116Q8IYX3 PRSS36-207ENST00000569305 2723 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
CCDC116Q8IYX3 CEP120-201ENST00000306467 4900 ntAPPRIS P1 TSL 5 BASIC16.41■□□□□ 0.22
CCDC116Q8IYX3 SH2D3C-213ENST00000629203 2478 ntTSL 2 BASIC16.41■□□□□ 0.22
CCDC116Q8IYX3 GPAT3-202ENST00000395226 2631 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CCDC116Q8IYX3 ARHGAP27-214ENST00000532891 2604 ntAPPRIS ALT2 TSL 5 BASIC16.41■□□□□ 0.22
CCDC116Q8IYX3 PFKFB3-215ENST00000536985 2094 ntTSL 2 BASIC16.41■□□□□ 0.22
CCDC116Q8IYX3 HFE2-201ENST00000336751 2234 ntAPPRIS P1 TSL 2 BASIC16.41■□□□□ 0.22
CCDC116Q8IYX3 AC046185.3-201ENST00000623228 1824 ntBASIC16.41■□□□□ 0.22
CCDC116Q8IYX3 CERCAM-201ENST00000372838 2685 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
CCDC116Q8IYX3 FTSJ1-201ENST00000019019 1986 ntAPPRIS ALT1 TSL 2 BASIC16.41■□□□□ 0.22
CCDC116Q8IYX3 EGR2-203ENST00000439032 2844 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CCDC116Q8IYX3 FBLIM1-202ENST00000375766 3695 ntAPPRIS P1 TSL 2 BASIC16.41■□□□□ 0.22
CCDC116Q8IYX3 RPS12-201ENST00000230050 631 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CCDC116Q8IYX3 ZNF804A-201ENST00000302277 4690 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CCDC116Q8IYX3 OR10H5-201ENST00000308940 1132 ntAPPRIS P1 BASIC16.41■□□□□ 0.22
CCDC116Q8IYX3 FAM86B2-202ENST00000309608 806 ntTSL 3 BASIC16.41■□□□□ 0.22
CCDC116Q8IYX3 FUOM-202ENST00000368551 628 ntTSL 3 BASIC16.41■□□□□ 0.22
CCDC116Q8IYX3 HCCS-202ENST00000380762 1072 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CCDC116Q8IYX3 GNB1L-203ENST00000405009 1076 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
CCDC116Q8IYX3 METTL21A-205ENST00000426075 1051 ntAPPRIS P1 TSL 2 BASIC16.41■□□□□ 0.22
CCDC116Q8IYX3 THAP5-204ENST00000438865 868 ntTSL 2 BASIC16.41■□□□□ 0.22
CCDC116Q8IYX3 COX18-204ENST00000507544 1086 ntAPPRIS ALT1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CCDC116Q8IYX3 MIR5100-201ENST00000579544 119 ntBASIC16.41■□□□□ 0.22
CCDC116Q8IYX3 SRSF1-209ENST00000585096 568 ntTSL 4 BASIC16.41■□□□□ 0.22
CCDC116Q8IYX3 STK25P1-201ENST00000585406 838 ntBASIC16.41■□□□□ 0.22
CCDC116Q8IYX3 TEAD2-204ENST00000593945 2141 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
CCDC116Q8IYX3 TXNDC12-205ENST00000610127 806 ntTSL 2 BASIC16.41■□□□□ 0.22
CCDC116Q8IYX3 AXIN2-208ENST00000611991 1019 ntTSL 5 BASIC16.41■□□□□ 0.22
CCDC116Q8IYX3 AC114341.1-201ENST00000618070 349 ntBASIC16.41■□□□□ 0.22
CCDC116Q8IYX3 CCNC-219ENST00000627680 896 ntTSL 5 BASIC16.41■□□□□ 0.22
CCDC116Q8IYX3 AL513523.2-201ENST00000633218 660 ntTSL 3 BASIC16.41■□□□□ 0.22
CCDC116Q8IYX3 CACNA1A-253ENST00000637927 6847 ntAPPRIS ALT2 TSL 5 BASIC16.41■□□□□ 0.22
CCDC116Q8IYX3 TMEM106C-203ENST00000449758 1414 ntTSL 2 BASIC16.41■□□□□ 0.22
CCDC116Q8IYX3 YIPF2-204ENST00000586748 1550 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CCDC116Q8IYX3 MAP7-209ENST00000618822 4497 ntAPPRIS ALT2 TSL 5 BASIC16.41■□□□□ 0.22
CCDC116Q8IYX3 FRMD4A-203ENST00000357447 6821 ntAPPRIS P2 TSL 1 (best) BASIC16.41■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 75.4 ms