Protein–RNA interactions for Protein: Q8IWA6

CCDC60, Coiled-coil domain-containing protein 60, humanhuman

Predicted RBP Predictions only

Length 550 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC60Q8IWA6 YDJC-202ENST00000398873 1066 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
CCDC60Q8IWA6 CRYGEP-201ENST00000412192 528 ntBASIC19.29■□□□□ 0.68
CCDC60Q8IWA6 IGLL3P-201ENST00000412472 434 ntBASIC19.29■□□□□ 0.68
CCDC60Q8IWA6 HCG4B-203ENST00000450128 991 ntBASIC19.29■□□□□ 0.68
CCDC60Q8IWA6 CR559946.1-201ENST00000453835 531 ntTSL 4 BASIC19.29■□□□□ 0.68
CCDC60Q8IWA6 AC116021.1-201ENST00000530049 653 ntTSL 3 BASIC19.29■□□□□ 0.68
CCDC60Q8IWA6 CR381653.1-203ENST00000625153 577 ntTSL 5 BASIC19.29■□□□□ 0.68
CCDC60Q8IWA6 LINC01635-202ENST00000635097 1023 ntTSL 5 BASIC19.29■□□□□ 0.68
CCDC60Q8IWA6 SLCO6A1-202ENST00000389019 2340 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
CCDC60Q8IWA6 HECTD2-203ENST00000371681 2175 ntTSL 2 BASIC19.29■□□□□ 0.68
CCDC60Q8IWA6 NKIRAS1-202ENST00000412028 1605 ntAPPRIS ALT1 TSL 5 BASIC19.29■□□□□ 0.68
CCDC60Q8IWA6 MAPT-209ENST00000446361 5345 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
CCDC60Q8IWA6 CARD10-202ENST00000403299 4113 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
CCDC60Q8IWA6 SMARCC1-201ENST00000254480 6375 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CCDC60Q8IWA6 FFAR2-202ENST00000599180 2133 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CCDC60Q8IWA6 PI4KAP1-204ENST00000612579 1703 ntBASIC19.28■□□□□ 0.68
CCDC60Q8IWA6 PDCL3-201ENST00000264254 1337 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CCDC60Q8IWA6 NFKB2-201ENST00000189444 3011 ntAPPRIS ALT1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CCDC60Q8IWA6 OSBPL9-222ENST00000531828 2210 ntTSL 5 BASIC19.28■□□□□ 0.68
CCDC60Q8IWA6 FAM222A-201ENST00000358906 2731 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
CCDC60Q8IWA6 SNTG2-202ENST00000407292 1436 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
CCDC60Q8IWA6 CLIP2-202ENST00000361545 5445 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
CCDC60Q8IWA6 MAP3K13-212ENST00000448876 1681 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
CCDC60Q8IWA6 NOC2LP2-201ENST00000407594 1944 ntBASIC19.28■□□□□ 0.68
CCDC60Q8IWA6 FAM86DP-207ENST00000497543 2152 ntTSL 2 BASIC19.28■□□□□ 0.68
CCDC60Q8IWA6 METTL26-201ENST00000301686 794 ntAPPRIS P1 TSL 2 BASIC19.28■□□□□ 0.68
CCDC60Q8IWA6 METTL26-205ENST00000397666 726 ntTSL 2 BASIC19.28■□□□□ 0.68
CCDC60Q8IWA6 C22orf39-203ENST00000399568 1005 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
CCDC60Q8IWA6 C6orf226-201ENST00000408925 552 ntAPPRIS P1 BASIC19.28■□□□□ 0.68
CCDC60Q8IWA6 WWOX-204ENST00000408984 1227 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
CCDC60Q8IWA6 PRSS29P-201ENST00000440800 595 ntBASIC19.28■□□□□ 0.68
CCDC60Q8IWA6 ITGB1BP1-205ENST00000456913 1043 ntTSL 2 BASIC19.28■□□□□ 0.68
CCDC60Q8IWA6 ITGB1BP1-216ENST00000488451 874 ntTSL 3 BASIC19.28■□□□□ 0.68
CCDC60Q8IWA6 TRAF3IP2-AS1-208ENST00000525151 609 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
CCDC60Q8IWA6 TRMT112-202ENST00000535126 704 ntTSL 2 BASIC19.28■□□□□ 0.68
CCDC60Q8IWA6 SLC25A3P1-206ENST00000569142 925 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
CCDC60Q8IWA6 NUTF2-206ENST00000569436 1119 ntAPPRIS P1 TSL 2 BASIC19.28■□□□□ 0.68
CCDC60Q8IWA6 TEX264-216ENST00000614067 1174 ntAPPRIS ALT2 TSL 3 BASIC19.28■□□□□ 0.68
CCDC60Q8IWA6 SUPT20H-202ENST00000356185 2681 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
CCDC60Q8IWA6 TBC1D10C-203ENST00000526387 1520 ntTSL 2 BASIC19.28■□□□□ 0.68
CCDC60Q8IWA6 TBXAS1-202ENST00000411653 1792 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
CCDC60Q8IWA6 FST-202ENST00000396947 2538 ntTSL 5 BASIC19.28■□□□□ 0.68
CCDC60Q8IWA6 ISLR2-210ENST00000565540 2780 ntAPPRIS P1 TSL 4 BASIC19.28■□□□□ 0.68
CCDC60Q8IWA6 SEC14L2-215ENST00000617837 2632 ntTSL 2 BASIC19.28■□□□□ 0.68
CCDC60Q8IWA6 MXRA8-202ENST00000342753 2231 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
CCDC60Q8IWA6 MAP3K6-207ENST00000493901 4309 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
CCDC60Q8IWA6 ZCCHC23-201ENST00000500526 1951 ntTSL 2 BASIC19.28■□□□□ 0.68
CCDC60Q8IWA6 DAPK2-202ENST00000457488 1741 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CCDC60Q8IWA6 AL133373.2-201ENST00000623187 2828 ntBASIC19.28■□□□□ 0.68
CCDC60Q8IWA6 AC067852.2-201ENST00000590513 2313 ntBASIC19.28■□□□□ 0.68
CCDC60Q8IWA6 ZNF385A-202ENST00000352268 2076 ntTSL 2 BASIC19.28■□□□□ 0.68
CCDC60Q8IWA6 ZNF133-212ENST00000622607 2660 ntAPPRIS ALT2 TSL 4 BASIC19.28■□□□□ 0.68
CCDC60Q8IWA6 NUDT4-202ENST00000415493 4839 ntAPPRIS ALT1 TSL 1 (best) BASIC19.27■□□□□ 0.68
CCDC60Q8IWA6 FAM3D-201ENST00000358781 1319 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
CCDC60Q8IWA6 GOLGA7-202ENST00000405786 1903 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
CCDC60Q8IWA6 AC068880.1-201ENST00000507289 2297 ntBASIC19.27■□□□□ 0.68
CCDC60Q8IWA6 CCDC3-201ENST00000378825 2731 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.68
CCDC60Q8IWA6 WIPI2-211ENST00000484262 1504 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
CCDC60Q8IWA6 MCTP1-218ENST00000515393 5396 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.68
CCDC60Q8IWA6 GTDC1-219ENST00000542155 2677 ntAPPRIS P1 TSL 2 BASIC19.27■□□□□ 0.68
CCDC60Q8IWA6 ZNF205-206ENST00000620094 2309 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
CCDC60Q8IWA6 WTAP-205ENST00000614346 1623 ntTSL 2 BASIC19.27■□□□□ 0.68
CCDC60Q8IWA6 CRADD-201ENST00000332896 1169 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
CCDC60Q8IWA6 MRPS16-201ENST00000372940 866 ntTSL 2 BASIC19.27■□□□□ 0.68
CCDC60Q8IWA6 CST3-201ENST00000376925 873 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
CCDC60Q8IWA6 MRPL20P1-201ENST00000400819 433 ntBASIC19.27■□□□□ 0.68
CCDC60Q8IWA6 COPS7B-207ENST00000410024 1103 ntAPPRIS P1 TSL 2 BASIC19.27■□□□□ 0.68
CCDC60Q8IWA6 AL031587.1-201ENST00000410099 1055 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
CCDC60Q8IWA6 AC023274.1-201ENST00000418278 595 ntBASIC19.27■□□□□ 0.68
CCDC60Q8IWA6 PRR29-203ENST00000425164 1266 ntTSL 2 BASIC19.27■□□□□ 0.68
CCDC60Q8IWA6 AC040169.1-201ENST00000565382 521 ntBASIC19.27■□□□□ 0.68
CCDC60Q8IWA6 AC010654.1-201ENST00000615722 808 ntBASIC19.27■□□□□ 0.68
CCDC60Q8IWA6 TMEM178A-206ENST00000618232 1286 ntTSL 5 BASIC19.27■□□□□ 0.68
CCDC60Q8IWA6 TNFRSF13B-201ENST00000261652 1357 ntAPPRIS P2 TSL 1 (best) BASIC19.27■□□□□ 0.68
CCDC60Q8IWA6 UBE2Q2-208ENST00000569423 2969 ntTSL 2 BASIC19.27■□□□□ 0.68
CCDC60Q8IWA6 ALAS2-203ENST00000396198 1936 ntTSL 5 BASIC19.27■□□□□ 0.67
CCDC60Q8IWA6 WDTC1-201ENST00000319394 4819 ntAPPRIS ALT1 TSL 1 (best) BASIC19.27■□□□□ 0.67
CCDC60Q8IWA6 CDH22-203ENST00000537909 3902 ntAPPRIS P1 TSL 2 BASIC19.27■□□□□ 0.67
CCDC60Q8IWA6 ZNF211-203ENST00000299871 2577 ntAPPRIS ALT2 TSL 3 BASIC19.27■□□□□ 0.67
CCDC60Q8IWA6 CCKBR-203ENST00000525462 2138 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
CCDC60Q8IWA6 ZNF274-202ENST00000345813 2678 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.67
CCDC60Q8IWA6 ADRA1A-206ENST00000380586 2304 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
CCDC60Q8IWA6 RER1-202ENST00000378512 1404 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
CCDC60Q8IWA6 HMBS-203ENST00000442944 1548 ntTSL 5 BASIC19.26■□□□□ 0.67
CCDC60Q8IWA6 SF1-203ENST00000377387 2947 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
CCDC60Q8IWA6 AC099684.1-202ENST00000425277 1747 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
CCDC60Q8IWA6 FCN2-201ENST00000291744 1057 ntAPPRIS P2 TSL 1 (best) BASIC19.26■□□□□ 0.67
CCDC60Q8IWA6 ROMO1-201ENST00000336695 496 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
CCDC60Q8IWA6 NABP1-203ENST00000409510 843 ntTSL 5 BASIC19.26■□□□□ 0.67
CCDC60Q8IWA6 SCRN1-203ENST00000409570 535 ntTSL 4 BASIC19.26■□□□□ 0.67
CCDC60Q8IWA6 SATB2-203ENST00000428695 2135 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
CCDC60Q8IWA6 LINC00237-202ENST00000455890 1220 ntTSL 2 BASIC19.26■□□□□ 0.67
CCDC60Q8IWA6 EFCAB1-209ENST00000523092 648 ntTSL 2 BASIC19.26■□□□□ 0.67
CCDC60Q8IWA6 MRVI1-AS1-203ENST00000529979 784 ntTSL 3 BASIC19.26■□□□□ 0.67
CCDC60Q8IWA6 AC092384.3-201ENST00000561980 531 ntTSL 4 BASIC19.26■□□□□ 0.67
CCDC60Q8IWA6 AC018845.2-201ENST00000568326 409 ntBASIC19.26■□□□□ 0.67
CCDC60Q8IWA6 KLK6-204ENST00000594641 842 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
CCDC60Q8IWA6 GPALPP1-207ENST00000611650 899 ntBASIC19.26■□□□□ 0.67
CCDC60Q8IWA6 GGTLC5P-201ENST00000617623 998 ntBASIC19.26■□□□□ 0.67
CCDC60Q8IWA6 HIST1H2AK-201ENST00000618958 393 ntAPPRIS P1 BASIC19.26■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 27.3 ms