Protein–RNA interactions for Protein: Q6NUP7

PPP4R4, Serine/threonine-protein phosphatase 4 regulatory subunit 4, humanhuman

Predictions only

Length 873 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PPP4R4Q6NUP7 PUS1-208ENST00000542167 2151 ntTSL 5 BASIC16.74■□□□□ 0.27
PPP4R4Q6NUP7 C2CD4C-201ENST00000332235 3129 ntAPPRIS P1 TSL 2 BASIC16.74■□□□□ 0.27
PPP4R4Q6NUP7 SNAPC4-201ENST00000298532 5010 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
PPP4R4Q6NUP7 JMJD6-202ENST00000397625 1603 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
PPP4R4Q6NUP7 CCDC120-202ENST00000496529 2415 ntAPPRIS P3 TSL 2 BASIC16.74■□□□□ 0.27
PPP4R4Q6NUP7 EEFSEC-202ENST00000483457 1859 ntTSL 5 BASIC16.73■□□□□ 0.27
PPP4R4Q6NUP7 CELF6-201ENST00000287202 3345 ntAPPRIS P3 TSL 1 (best) BASIC16.73■□□□□ 0.27
PPP4R4Q6NUP7 LRRTM1-202ENST00000409148 2126 ntAPPRIS P1 TSL 4 BASIC16.73■□□□□ 0.27
PPP4R4Q6NUP7 NUDT16L1-201ENST00000304301 1349 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
PPP4R4Q6NUP7 DLG4-202ENST00000399506 3185 ntAPPRIS ALT1 TSL 2 BASIC16.73■□□□□ 0.27
PPP4R4Q6NUP7 HS2ST1-202ENST00000370551 1585 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
PPP4R4Q6NUP7 GPER1-202ENST00000397088 2639 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
PPP4R4Q6NUP7 SURF4-208ENST00000613129 3148 ntTSL 2 BASIC16.73■□□□□ 0.27
PPP4R4Q6NUP7 VWA1-203ENST00000476993 4511 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
PPP4R4Q6NUP7 FMNL1-201ENST00000328118 2330 ntTSL 2 BASIC16.73■□□□□ 0.27
PPP4R4Q6NUP7 ADRA1A-206ENST00000380586 2304 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
PPP4R4Q6NUP7 AC012615.6-201ENST00000593201 1697 ntTSL 2 BASIC16.73■□□□□ 0.27
PPP4R4Q6NUP7 GOLGA7-202ENST00000405786 1903 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
PPP4R4Q6NUP7 RGMB-AS1-201ENST00000498871 1903 ntTSL 2 BASIC16.73■□□□□ 0.27
PPP4R4Q6NUP7 FOXRED2-203ENST00000397223 2184 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
PPP4R4Q6NUP7 FGF8-202ENST00000344255 707 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
PPP4R4Q6NUP7 LCN8-201ENST00000371688 867 ntAPPRIS P2 TSL 1 (best) BASIC16.73■□□□□ 0.27
PPP4R4Q6NUP7 GUCA2B-201ENST00000372581 597 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
PPP4R4Q6NUP7 MAGI2-AS3-203ENST00000424477 520 ntTSL 4 BASIC16.73■□□□□ 0.27
PPP4R4Q6NUP7 KRT18P23-201ENST00000435622 1283 ntBASIC16.73■□□□□ 0.27
PPP4R4Q6NUP7 ELP6-205ENST00000439305 880 ntTSL 2 BASIC16.73■□□□□ 0.27
PPP4R4Q6NUP7 CR769775.1-204ENST00000439760 747 ntTSL 5 BASIC16.73■□□□□ 0.27
PPP4R4Q6NUP7 MAP3K13-213ENST00000454237 526 ntTSL 3 BASIC16.73■□□□□ 0.27
PPP4R4Q6NUP7 CDKN2AIPNL-202ENST00000458198 1223 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
PPP4R4Q6NUP7 WWOX-216ENST00000569818 525 ntBASIC16.73■□□□□ 0.27
PPP4R4Q6NUP7 NTF6B-201ENST00000591913 560 ntBASIC16.73■□□□□ 0.27
PPP4R4Q6NUP7 CENPS-CORT-205ENST00000602787 571 ntAPPRIS P1 TSL 3 BASIC16.73■□□□□ 0.27
PPP4R4Q6NUP7 GOLGA2P10-205ENST00000618267 983 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
PPP4R4Q6NUP7 ALG3-201ENST00000397676 1528 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
PPP4R4Q6NUP7 ITPK1-210ENST00000556603 3174 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
PPP4R4Q6NUP7 POLR3H-202ENST00000355209 4416 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
PPP4R4Q6NUP7 GDF11-201ENST00000257868 8657 ntAPPRIS P2 TSL 1 (best) BASIC16.73■□□□□ 0.27
PPP4R4Q6NUP7 FAM110A-201ENST00000246100 1619 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
PPP4R4Q6NUP7 CDKN1A-204ENST00000448526 2104 ntAPPRIS P1 TSL 3 BASIC16.73■□□□□ 0.27
PPP4R4Q6NUP7 SQLE-201ENST00000265896 2961 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
PPP4R4Q6NUP7 CCDC6-201ENST00000263102 5811 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
PPP4R4Q6NUP7 CSNK2A2-201ENST00000262506 1701 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
PPP4R4Q6NUP7 LRRC27-214ENST00000625755 1738 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
PPP4R4Q6NUP7 SH3BP5-202ENST00000383791 2822 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
PPP4R4Q6NUP7 RASA2-202ENST00000452898 2562 ntAPPRIS ALT2 TSL 5 BASIC16.73■□□□□ 0.27
PPP4R4Q6NUP7 MAP2K5-201ENST00000178640 2347 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
PPP4R4Q6NUP7 PML-215ENST00000565898 5393 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
PPP4R4Q6NUP7 ANKRD33B-201ENST00000296657 9188 ntAPPRIS P1 TSL 5 BASIC16.72■□□□□ 0.27
PPP4R4Q6NUP7 SH3BP4-201ENST00000344528 5044 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
PPP4R4Q6NUP7 SHTN1-202ENST00000355371 5361 ntAPPRIS ALT1 TSL 2 BASIC16.72■□□□□ 0.27
PPP4R4Q6NUP7 SLC9A7-205ENST00000616978 10024 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
PPP4R4Q6NUP7 TJP2-202ENST00000377245 4611 ntAPPRIS P4 TSL 1 (best) BASIC16.72■□□□□ 0.27
PPP4R4Q6NUP7 LSP1-203ENST00000405957 1785 ntAPPRIS ALT2 TSL 5 BASIC16.72■□□□□ 0.27
PPP4R4Q6NUP7 LINC00905-202ENST00000588117 1768 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
PPP4R4Q6NUP7 ADORA1-204ENST00000367236 3407 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
PPP4R4Q6NUP7 NAP1L4-222ENST00000620138 2479 ntTSL 2 BASIC16.72■□□□□ 0.27
PPP4R4Q6NUP7 ERCC2-205ENST00000485403 1538 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
PPP4R4Q6NUP7 FAM110A-202ENST00000304189 1856 ntAPPRIS P1 TSL 2 BASIC16.72■□□□□ 0.27
PPP4R4Q6NUP7 AGXT-201ENST00000307503 1865 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
PPP4R4Q6NUP7 LINC01126-201ENST00000623515 1646 ntBASIC16.72■□□□□ 0.27
PPP4R4Q6NUP7 BAD-201ENST00000309032 929 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
PPP4R4Q6NUP7 TSPAN14-202ENST00000341863 1037 ntTSL 5 BASIC16.72■□□□□ 0.27
PPP4R4Q6NUP7 COPE-203ENST00000351079 907 ntTSL 2 BASIC16.72■□□□□ 0.27
PPP4R4Q6NUP7 LCE4A-202ENST00000368777 672 ntAPPRIS P1 TSL 2 BASIC16.72■□□□□ 0.27
PPP4R4Q6NUP7 SUV39H2-204ENST00000378325 1292 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
PPP4R4Q6NUP7 TSPY5P-201ENST00000426936 936 ntBASIC16.72■□□□□ 0.27
PPP4R4Q6NUP7 GRAMD4P1-201ENST00000435181 1110 ntBASIC16.72■□□□□ 0.27
PPP4R4Q6NUP7 EHMT1-211ENST00000482340 691 ntTSL 5 BASIC16.72■□□□□ 0.27
PPP4R4Q6NUP7 LINC01385-201ENST00000512310 780 ntTSL 4 BASIC16.72■□□□□ 0.27
PPP4R4Q6NUP7 AC022616.7-201ENST00000525383 220 ntBASIC16.72■□□□□ 0.27
PPP4R4Q6NUP7 AL441883.1-201ENST00000566170 1045 ntBASIC16.72■□□□□ 0.27
PPP4R4Q6NUP7 SYT17-207ENST00000568115 1721 ntTSL 5 BASIC16.72■□□□□ 0.27
PPP4R4Q6NUP7 ZMYM5-202ENST00000382905 1382 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
PPP4R4Q6NUP7 DDIT4L-201ENST00000273990 2604 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
PPP4R4Q6NUP7 ATP6V0E2-201ENST00000421974 2605 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
PPP4R4Q6NUP7 NGFR-202ENST00000504201 1840 ntTSL 2 BASIC16.72■□□□□ 0.27
PPP4R4Q6NUP7 CYTH2-204ENST00000452733 4780 ntAPPRIS P2 TSL 1 (best) BASIC16.72■□□□□ 0.27
PPP4R4Q6NUP7 CLIP4-201ENST00000320081 4293 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
PPP4R4Q6NUP7 JMJD4-206ENST00000615711 2591 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
PPP4R4Q6NUP7 TRPC4AP-202ENST00000451813 3138 ntTSL 2 BASIC16.72■□□□□ 0.27
PPP4R4Q6NUP7 BLOC1S5-202ENST00000397457 2684 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
PPP4R4Q6NUP7 B3GNT3-201ENST00000318683 2226 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
PPP4R4Q6NUP7 NIPA2-201ENST00000337451 3233 ntAPPRIS P1 TSL 5 BASIC16.72■□□□□ 0.27
PPP4R4Q6NUP7 NT5DC3-201ENST00000392876 7207 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
PPP4R4Q6NUP7 PABPC4-203ENST00000372858 2753 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
PPP4R4Q6NUP7 ZNF514-202ENST00000411425 2755 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
PPP4R4Q6NUP7 TRIM39-201ENST00000376656 3338 ntAPPRIS P4 TSL 2 BASIC16.72■□□□□ 0.27
PPP4R4Q6NUP7 MYB-209ENST00000442647 3304 ntAPPRIS ALT1 TSL 1 (best) BASIC16.72■□□□□ 0.27
PPP4R4Q6NUP7 PRDM5-203ENST00000428209 2338 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
PPP4R4Q6NUP7 EPB41-205ENST00000373797 2402 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
PPP4R4Q6NUP7 CRTC3-201ENST00000268184 2537 ntAPPRIS P3 TSL 1 (best) BASIC16.71■□□□□ 0.27
PPP4R4Q6NUP7 ICA1-208ENST00000407906 1615 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
PPP4R4Q6NUP7 CLIC5-202ENST00000339561 2390 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
PPP4R4Q6NUP7 ECSIT-202ENST00000270517 1700 ntAPPRIS P3 TSL 1 (best) BASIC16.71■□□□□ 0.27
PPP4R4Q6NUP7 CA12-203ENST00000422263 2556 ntTSL 2 BASIC16.71■□□□□ 0.27
PPP4R4Q6NUP7 ACIN1-205ENST00000457657 4815 ntAPPRIS ALT2 TSL 5 BASIC16.71■□□□□ 0.27
PPP4R4Q6NUP7 EIF4H-201ENST00000265753 2679 ntAPPRIS P4 TSL 2 BASIC16.71■□□□□ 0.27
PPP4R4Q6NUP7 HYAL3-201ENST00000336307 1942 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
PPP4R4Q6NUP7 RNF165-204ENST00000587853 2011 ntTSL 5 BASIC16.71■□□□□ 0.27
PPP4R4Q6NUP7 SLC9A2-201ENST00000233969 5410 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 68.6 ms