Protein–RNA interactions for Protein: Q6DD88

ATL3, Atlastin-3, humanhuman

Predictions only

Length 541 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATL3Q6DD88 MYL6-203ENST00000536128 1221 ntTSL 2 BASIC19.86■□□□□ 0.77
ATL3Q6DD88 DHRS2-210ENST00000611765 1287 ntAPPRIS ALT2 TSL 2 BASIC19.86■□□□□ 0.77
ATL3Q6DD88 ARHGEF25-208ENST00000616622 2103 ntTSL 2 BASIC19.86■□□□□ 0.77
ATL3Q6DD88 AL135999.2-201ENST00000622438 1686 ntBASIC19.86■□□□□ 0.77
ATL3Q6DD88 PPP1R3B-202ENST00000519699 2334 ntAPPRIS P1 TSL 2 BASIC19.86■□□□□ 0.77
ATL3Q6DD88 EDA-204ENST00000374553 5272 ntAPPRIS ALT1 TSL 1 (best) BASIC19.86■□□□□ 0.77
ATL3Q6DD88 NFATC4-218ENST00000554966 2506 ntAPPRIS ALT2 TSL 1 (best) BASIC19.85■□□□□ 0.77
ATL3Q6DD88 NFATC4-225ENST00000556169 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC19.85■□□□□ 0.77
ATL3Q6DD88 MAGEA4-206ENST00000393921 1727 ntAPPRIS P1 TSL 5 BASIC19.85■□□□□ 0.77
ATL3Q6DD88 PIGX-202ENST00000392391 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC19.85■□□□□ 0.77
ATL3Q6DD88 TCP1-203ENST00000420894 1671 ntTSL 5 BASIC19.85■□□□□ 0.77
ATL3Q6DD88 TRIM27-201ENST00000377194 2686 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
ATL3Q6DD88 ULK3-201ENST00000440863 2623 ntAPPRIS P3 TSL 2 BASIC19.85■□□□□ 0.77
ATL3Q6DD88 C14orf28-201ENST00000325192 2915 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
ATL3Q6DD88 C12orf56-207ENST00000543942 3242 ntAPPRIS P1 TSL 5 BASIC19.85■□□□□ 0.77
ATL3Q6DD88 AL590627.1-201ENST00000626603 1910 ntTSL 2 BASIC19.85■□□□□ 0.77
ATL3Q6DD88 AC003669.1-201ENST00000334569 611 ntBASIC19.85■□□□□ 0.77
ATL3Q6DD88 C6orf48-206ENST00000375641 602 ntAPPRIS P1 TSL 2 BASIC19.85■□□□□ 0.77
ATL3Q6DD88 AC068134.1-202ENST00000439072 356 ntTSL 5 BASIC19.85■□□□□ 0.77
ATL3Q6DD88 SMIM4-202ENST00000476842 522 ntTSL 4 BASIC19.85■□□□□ 0.77
ATL3Q6DD88 DUX4L26-201ENST00000489078 1255 ntBASIC19.85■□□□□ 0.77
ATL3Q6DD88 STK19B-204ENST00000512515 211 ntBASIC19.85■□□□□ 0.77
ATL3Q6DD88 AC126696.3-202ENST00000570159 553 ntTSL 5 BASIC19.85■□□□□ 0.77
ATL3Q6DD88 AC011467.2-201ENST00000598425 242 ntBASIC19.85■□□□□ 0.77
ATL3Q6DD88 GFOD2-207ENST00000602855 819 ntTSL 3 BASIC19.85■□□□□ 0.77
ATL3Q6DD88 AL807752.6-202ENST00000622933 765 ntAPPRIS P5 TSL 3 BASIC19.85■□□□□ 0.77
ATL3Q6DD88 AD001527.2-201ENST00000622994 785 ntBASIC19.85■□□□□ 0.77
ATL3Q6DD88 STX3-203ENST00000529177 1571 ntTSL 2 BASIC19.85■□□□□ 0.77
ATL3Q6DD88 CYP2U1-202ENST00000508453 3125 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
ATL3Q6DD88 FAM86DP-207ENST00000497543 2152 ntTSL 2 BASIC19.85■□□□□ 0.77
ATL3Q6DD88 LSM12-204ENST00000591247 2484 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
ATL3Q6DD88 DIAPH1-201ENST00000253811 5789 ntAPPRIS ALT2 TSL 5 BASIC19.85■□□□□ 0.77
ATL3Q6DD88 DIAPH1-202ENST00000389054 5795 ntAPPRIS P4 TSL 5 BASIC19.85■□□□□ 0.77
ATL3Q6DD88 DIAPH1-204ENST00000398557 5789 ntAPPRIS ALT2 TSL 5 BASIC19.85■□□□□ 0.77
ATL3Q6DD88 LIN54-204ENST00000505397 2742 ntAPPRIS P1 TSL 5 BASIC19.85■□□□□ 0.77
ATL3Q6DD88 C4orf32-201ENST00000309733 8901 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
ATL3Q6DD88 FBXO41-205ENST00000521871 7336 ntAPPRIS P1 TSL 5 BASIC19.85■□□□□ 0.77
ATL3Q6DD88 SYNM-204ENST00000594047 6407 ntAPPRIS ALT2 TSL 1 (best) BASIC19.85■□□□□ 0.77
ATL3Q6DD88 DNAJA3-202ENST00000355296 2591 ntAPPRIS ALT1 TSL 1 (best) BASIC19.85■□□□□ 0.77
ATL3Q6DD88 C18orf63-201ENST00000579455 5127 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
ATL3Q6DD88 HCN4-201ENST00000261917 7228 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
ATL3Q6DD88 B4GALNT2-201ENST00000300404 1906 ntAPPRIS P3 TSL 1 (best) BASIC19.84■□□□□ 0.77
ATL3Q6DD88 DKFZP434K028-202ENST00000536405 2466 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
ATL3Q6DD88 KCNQ1-201ENST00000155840 3245 ntAPPRIS P2 TSL 1 (best) BASIC19.84■□□□□ 0.77
ATL3Q6DD88 C10orf10-201ENST00000298295 2120 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
ATL3Q6DD88 CAB39-203ENST00000410084 1324 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
ATL3Q6DD88 BRPF1-201ENST00000383829 4736 ntAPPRIS ALT1 TSL 1 (best) BASIC19.84■□□□□ 0.77
ATL3Q6DD88 EXD3-201ENST00000340951 2872 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
ATL3Q6DD88 CACNB3-203ENST00000540990 1814 ntTSL 2 BASIC19.84■□□□□ 0.77
ATL3Q6DD88 CNPPD1-201ENST00000360507 2060 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
ATL3Q6DD88 SPIDR-227ENST00000541342 3311 ntAPPRIS ALT2 TSL 2 BASIC19.84■□□□□ 0.77
ATL3Q6DD88 NXPH2-201ENST00000272641 1052 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
ATL3Q6DD88 BOLA1-202ENST00000369152 859 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
ATL3Q6DD88 MPIG6B-202ENST00000375805 668 ntAPPRIS ALT2 TSL 1 (best) BASIC19.84■□□□□ 0.77
ATL3Q6DD88 FAM239B-201ENST00000381106 1099 ntTSL 2 BASIC19.84■□□□□ 0.77
ATL3Q6DD88 CCDC61-201ENST00000536603 1282 ntAPPRIS ALT2 TSL 1 (best) BASIC19.84■□□□□ 0.77
ATL3Q6DD88 FAM181A-203ENST00000556222 1162 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
ATL3Q6DD88 AC003688.1-201ENST00000577138 489 ntAPPRIS P1 TSL 3 BASIC19.84■□□□□ 0.77
ATL3Q6DD88 TTC29-205ENST00000504425 1777 ntAPPRIS ALT2 TSL 5 BASIC19.84■□□□□ 0.77
ATL3Q6DD88 OSGEP-201ENST00000206542 2002 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
ATL3Q6DD88 PAX4-202ENST00000341640 2010 ntAPPRIS P2 TSL 1 (best) BASIC19.84■□□□□ 0.77
ATL3Q6DD88 TTC24-201ENST00000368236 2005 ntAPPRIS P1 TSL 5 BASIC19.84■□□□□ 0.77
ATL3Q6DD88 TRPV4-207ENST00000541794 2475 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
ATL3Q6DD88 NFATC4-223ENST00000555802 1476 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
ATL3Q6DD88 ST6GALNAC6-202ENST00000373141 2424 ntAPPRIS ALT1 TSL 2 BASIC19.84■□□□□ 0.77
ATL3Q6DD88 EPB41-205ENST00000373797 2402 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
ATL3Q6DD88 FBXO18-203ENST00000397269 3640 ntTSL 5 BASIC19.84■□□□□ 0.77
ATL3Q6DD88 DMRTC2-204ENST00000596827 1675 ntTSL 2 BASIC19.84■□□□□ 0.77
ATL3Q6DD88 REL-202ENST00000394479 2398 ntAPPRIS ALT2 TSL 1 (best) BASIC19.84■□□□□ 0.77
ATL3Q6DD88 CDK10-208ENST00000505473 1424 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
ATL3Q6DD88 HMGXB3-206ENST00000613459 5567 ntAPPRIS ALT2 TSL 5 BASIC19.84■□□□□ 0.77
ATL3Q6DD88 TBX18-202ENST00000369663 6245 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
ATL3Q6DD88 TNK2-AS1-201ENST00000458180 2096 ntTSL 2 BASIC19.83■□□□□ 0.77
ATL3Q6DD88 ESYT3-201ENST00000289135 1356 ntTSL 5 BASIC19.83■□□□□ 0.77
ATL3Q6DD88 PTPRN2-204ENST00000404321 1374 ntTSL 5 BASIC19.83■□□□□ 0.77
ATL3Q6DD88 AC011840.1-202ENST00000436477 1351 ntTSL 2 BASIC19.83■□□□□ 0.77
ATL3Q6DD88 PCDHA14-201ENST00000506751 2298 ntBASIC19.83■□□□□ 0.77
ATL3Q6DD88 SCNN1D-206ENST00000400928 2731 ntAPPRIS ALT2 TSL 5 BASIC19.83■□□□□ 0.77
ATL3Q6DD88 MGAT2-201ENST00000305386 2687 ntAPPRIS P1 BASIC19.83■□□□□ 0.77
ATL3Q6DD88 BLOC1S5-202ENST00000397457 2684 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
ATL3Q6DD88 TCAF2-203ENST00000425618 2448 ntTSL 2 BASIC19.83■□□□□ 0.77
ATL3Q6DD88 FBXL22-202ENST00000534939 2443 ntAPPRIS ALT2 TSL 3 BASIC19.83■□□□□ 0.77
ATL3Q6DD88 SPG7-201ENST00000268704 3076 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
ATL3Q6DD88 PPT2-246ENST00000375137 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.77
ATL3Q6DD88 AURKAIP1-202ENST00000338338 1047 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
ATL3Q6DD88 BECN2-201ENST00000419583 1296 ntAPPRIS P1 BASIC19.83■□□□□ 0.77
ATL3Q6DD88 VENTXP7-201ENST00000475503 772 ntBASIC19.83■□□□□ 0.77
ATL3Q6DD88 LCN10-205ENST00000497771 723 ntAPPRIS P2 TSL 1 (best) BASIC19.83■□□□□ 0.77
ATL3Q6DD88 LY6E-209ENST00000521003 740 ntAPPRIS P2 TSL 2 BASIC19.83■□□□□ 0.77
ATL3Q6DD88 RNASEH2C-202ENST00000527610 835 ntTSL 2 BASIC19.83■□□□□ 0.77
ATL3Q6DD88 AC013356.2-201ENST00000559730 729 ntTSL 3 BASIC19.83■□□□□ 0.77
ATL3Q6DD88 BDKRB1-204ENST00000611804 1085 ntAPPRIS P1 BASIC19.83■□□□□ 0.77
ATL3Q6DD88 ANKS1A-201ENST00000360359 6347 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
ATL3Q6DD88 GAPDH-201ENST00000229239 1875 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
ATL3Q6DD88 ESR2-205ENST00000358599 1899 ntTSL 2 BASIC19.83■□□□□ 0.76
ATL3Q6DD88 HMGXB3-201ENST00000502717 4974 ntAPPRIS P2 TSL 1 (best) BASIC19.83■□□□□ 0.76
ATL3Q6DD88 CDC25A-202ENST00000351231 3663 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
ATL3Q6DD88 HYAL3-205ENST00000450982 1402 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
ATL3Q6DD88 AL355315.1-201ENST00000370649 1848 ntAPPRIS P1 TSL 2 BASIC19.83■□□□□ 0.76
ATL3Q6DD88 NSMF-204ENST00000371473 3556 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 44.5 ms