Protein–RNA interactions for Protein: P98160

HSPG2, Basement membrane-specific heparan sulfate proteoglycan core protein, humanhuman

Predictions only

Length 4,391 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HSPG2P98160 TFPT-203ENST00000391759 1205 ntAPPRIS P3 TSL 1 (best) BASIC10.63□□□□□ -0.71
HSPG2P98160 AC073130.2-202ENST00000444244 842 ntTSL 3 BASIC10.63□□□□□ -0.71
HSPG2P98160 AC087163.2-201ENST00000457299 853 ntBASIC10.63□□□□□ -0.71
HSPG2P98160 PPA1-206ENST00000625364 644 ntTSL 5 BASIC10.63□□□□□ -0.71
HSPG2P98160 ANAPC11-211ENST00000575195 1361 ntAPPRIS P1 TSL 2 BASIC10.63□□□□□ -0.71
HSPG2P98160 CHRNB2-205ENST00000637900 2390 ntAPPRIS ALT1 TSL 5 BASIC10.63□□□□□ -0.71
HSPG2P98160 KRT1-201ENST00000252244 2451 ntAPPRIS P1 TSL 1 (best) BASIC10.63□□□□□ -0.71
HSPG2P98160 SEPT6-202ENST00000354228 1576 ntAPPRIS P4 TSL 1 (best) BASIC10.63□□□□□ -0.71
HSPG2P98160 TMEM216-203ENST00000515837 1958 ntAPPRIS P2 TSL 2 BASIC10.63□□□□□ -0.71
HSPG2P98160 BRSK1-201ENST00000309383 3079 ntAPPRIS P1 TSL 1 (best) BASIC10.63□□□□□ -0.71
HSPG2P98160 ACTA1-201ENST00000366683 1122 ntTSL 5 BASIC10.63□□□□□ -0.71
HSPG2P98160 PKIG-202ENST00000372886 1180 ntAPPRIS P1 TSL 2 BASIC10.63□□□□□ -0.71
HSPG2P98160 RETN-202ENST00000381324 249 ntTSL 1 (best) BASIC10.63□□□□□ -0.71
HSPG2P98160 LINC01806-201ENST00000436506 765 ntTSL 2 BASIC10.63□□□□□ -0.71
HSPG2P98160 PRSS42-202ENST00000447340 1280 ntTSL 2 BASIC10.63□□□□□ -0.71
HSPG2P98160 PPP1R14B-203ENST00000542235 920 ntTSL 1 (best) BASIC10.63□□□□□ -0.71
HSPG2P98160 MPI-209ENST00000564003 1195 ntTSL 2 BASIC10.63□□□□□ -0.71
HSPG2P98160 HEXIM2-206ENST00000591576 1176 ntAPPRIS P1 TSL 1 (best) BASIC10.63□□□□□ -0.71
HSPG2P98160 ANKS3-227ENST00000592711 580 ntTSL 4 BASIC10.63□□□□□ -0.71
HSPG2P98160 AC244093.1-201ENST00000610837 814 ntBASIC10.63□□□□□ -0.71
HSPG2P98160 PHOSPHO2-207ENST00000616524 1253 ntAPPRIS P1 TSL 3 BASIC10.63□□□□□ -0.71
HSPG2P98160 KCNAB2-212ENST00000458166 1336 ntTSL 2 BASIC10.63□□□□□ -0.71
HSPG2P98160 SIRT6-201ENST00000305232 1506 ntTSL 1 (best) BASIC10.63□□□□□ -0.71
HSPG2P98160 SLC22A11-202ENST00000377581 1975 ntTSL 5 BASIC10.63□□□□□ -0.71
HSPG2P98160 GPR62-201ENST00000322241 2191 ntAPPRIS P1 BASIC10.63□□□□□ -0.71
HSPG2P98160 TBX21-201ENST00000177694 2572 ntAPPRIS P1 TSL 1 (best) BASIC10.63□□□□□ -0.71
HSPG2P98160 ZDHHC8P1-201ENST00000255890 2382 ntTSL 2 BASIC10.63□□□□□ -0.71
HSPG2P98160 MAG-202ENST00000392213 2390 ntAPPRIS P4 TSL 1 (best) BASIC10.63□□□□□ -0.71
HSPG2P98160 APBB1-215ENST00000608394 2128 ntTSL 5 BASIC10.63□□□□□ -0.71
HSPG2P98160 APBB1-222ENST00000610474 2147 ntTSL 5 BASIC10.63□□□□□ -0.71
HSPG2P98160 CPEB2-202ENST00000345451 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC10.63□□□□□ -0.71
HSPG2P98160 FOXO1B-201ENST00000504678 1527 ntBASIC10.63□□□□□ -0.71
HSPG2P98160 WDR45-234ENST00000634838 1545 ntTSL 5 BASIC10.63□□□□□ -0.71
HSPG2P98160 EMC4-201ENST00000249209 852 ntTSL 1 (best) BASIC10.63□□□□□ -0.71
HSPG2P98160 CSHL1-203ENST00000346606 659 ntTSL 1 (best) BASIC10.63□□□□□ -0.71
HSPG2P98160 ZDHHC12-201ENST00000372663 1129 ntAPPRIS P1 TSL 1 (best) BASIC10.63□□□□□ -0.71
HSPG2P98160 AC234783.1-201ENST00000441761 496 ntBASIC10.63□□□□□ -0.71
HSPG2P98160 TSPAN32-207ENST00000451520 1236 ntAPPRIS ALT2 TSL 2 BASIC10.63□□□□□ -0.71
HSPG2P98160 SPSB2-204ENST00000523102 1205 ntAPPRIS P1 TSL 1 (best) BASIC10.63□□□□□ -0.71
HSPG2P98160 SPSB2-205ENST00000524270 1236 ntAPPRIS P1 TSL 1 (best) BASIC10.63□□□□□ -0.71
HSPG2P98160 AC018529.1-201ENST00000613063 361 ntBASIC10.63□□□□□ -0.71
HSPG2P98160 MMD2-201ENST00000401401 2335 ntAPPRIS P1 TSL 1 (best) BASIC10.62□□□□□ -0.71
HSPG2P98160 PML-211ENST00000564428 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC10.62□□□□□ -0.71
HSPG2P98160 GCOM1-202ENST00000380569 1846 ntAPPRIS P3 TSL 2 BASIC10.62□□□□□ -0.71
HSPG2P98160 DTD2-202ENST00000356180 1400 ntAPPRIS P1 TSL 1 (best) BASIC10.62□□□□□ -0.71
HSPG2P98160 CMTM2-202ENST00000379486 904 ntAPPRIS ALT2 TSL 1 (best) BASIC10.62□□□□□ -0.71
HSPG2P98160 AC007952.1-202ENST00000399083 1173 ntTSL 1 (best) BASIC10.62□□□□□ -0.71
HSPG2P98160 OSM-202ENST00000403389 1000 ntAPPRIS ALT2 TSL 3 BASIC10.62□□□□□ -0.71
HSPG2P98160 FBLN7-204ENST00000409667 1124 ntTSL 1 (best) BASIC10.62□□□□□ -0.71
HSPG2P98160 CROCCP4-201ENST00000457096 498 ntBASIC10.62□□□□□ -0.71
HSPG2P98160 SSNA1-204ENST00000464553 723 ntTSL 2 BASIC10.62□□□□□ -0.71
HSPG2P98160 AC084864.1-201ENST00000496217 305 ntTSL 3 BASIC10.62□□□□□ -0.71
HSPG2P98160 LINC01184-209ENST00000514573 609 ntTSL 3 BASIC10.62□□□□□ -0.71
HSPG2P98160 ZNF890P-202ENST00000530367 1156 ntBASIC10.62□□□□□ -0.71
HSPG2P98160 STOM-203ENST00000538954 1257 ntTSL 5 BASIC10.62□□□□□ -0.71
HSPG2P98160 MSLN-205ENST00000563941 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC10.62□□□□□ -0.71
HSPG2P98160 AC106017.2-201ENST00000631194 1173 ntTSL 2 BASIC10.62□□□□□ -0.71
HSPG2P98160 LDHAL6A-202ENST00000396213 1716 ntAPPRIS P1 TSL 1 (best) BASIC10.62□□□□□ -0.71
HSPG2P98160 PRRT2-219ENST00000637565 1733 ntTSL 5 BASIC10.62□□□□□ -0.71
HSPG2P98160 YTHDF3-213ENST00000621820 2363 ntTSL 2 BASIC10.62□□□□□ -0.71
HSPG2P98160 TSNAXIP1-202ENST00000415766 2338 ntAPPRIS ALT2 TSL 2 BASIC10.62□□□□□ -0.71
HSPG2P98160 SCUBE1-201ENST00000290460 2258 ntTSL 1 (best) BASIC10.62□□□□□ -0.71
HSPG2P98160 RAI2-203ENST00000415486 2037 ntTSL 2 BASIC10.62□□□□□ -0.71
HSPG2P98160 PDP1-208ENST00000520728 2554 ntAPPRIS P3 TSL 1 (best) BASIC10.62□□□□□ -0.71
HSPG2P98160 ACTR2-205ENST00000542850 1429 ntTSL 1 (best) BASIC10.62□□□□□ -0.71
HSPG2P98160 SCAND1-201ENST00000305978 902 ntAPPRIS P1 TSL 1 (best) BASIC10.62□□□□□ -0.71
HSPG2P98160 PXMP4-202ENST00000344022 989 ntTSL 2 BASIC10.62□□□□□ -0.71
HSPG2P98160 SVIL-AS1-208ENST00000446807 1007 ntTSL 3 BASIC10.62□□□□□ -0.71
HSPG2P98160 PSMB5-204ENST00000460922 729 ntTSL 2 BASIC10.62□□□□□ -0.71
HSPG2P98160 AC008808.1-201ENST00000508923 432 ntTSL 3 BASIC10.62□□□□□ -0.71
HSPG2P98160 ALG1L8P-201ENST00000533887 760 ntBASIC10.62□□□□□ -0.71
HSPG2P98160 AC123786.1-201ENST00000581626 661 ntTSL 3 BASIC10.62□□□□□ -0.71
HSPG2P98160 FLT3LG-205ENST00000596435 1034 ntTSL 5 BASIC10.62□□□□□ -0.71
HSPG2P98160 KRTAP5-AS1-201ENST00000424148 2265 ntTSL 2 BASIC10.62□□□□□ -0.71
HSPG2P98160 PAQR4-201ENST00000293978 2644 ntTSL 2 BASIC10.62□□□□□ -0.71
HSPG2P98160 BTNL9-202ENST00000376841 1626 ntTSL 1 (best) BASIC10.62□□□□□ -0.71
HSPG2P98160 NAF1-202ENST00000422287 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC10.62□□□□□ -0.71
HSPG2P98160 MID1IP1-201ENST00000336949 2536 ntAPPRIS P1 TSL 1 (best) BASIC10.62□□□□□ -0.71
HSPG2P98160 PAFAH1B2-202ENST00000419197 2517 ntTSL 2 BASIC10.62□□□□□ -0.71
HSPG2P98160 DMRT2-202ENST00000302441 1495 ntTSL 5 BASIC10.62□□□□□ -0.71
HSPG2P98160 ERICH1-201ENST00000262109 1813 ntAPPRIS P2 TSL 1 (best) BASIC10.62□□□□□ -0.71
HSPG2P98160 GREB1-205ENST00000389825 1315 ntTSL 1 (best) BASIC10.62□□□□□ -0.71
HSPG2P98160 LGI3-202ENST00000424267 3114 ntTSL 1 (best) BASIC10.62□□□□□ -0.71
HSPG2P98160 ZNF324B-202ENST00000545523 2368 ntAPPRIS P1 TSL 1 (best) BASIC10.62□□□□□ -0.71
HSPG2P98160 TPM2-201ENST00000329305 1018 ntAPPRIS ALT1 TSL 2 BASIC10.62□□□□□ -0.71
HSPG2P98160 AL080243.2-201ENST00000418783 582 ntBASIC10.62□□□□□ -0.71
HSPG2P98160 SNHG12-210ENST00000483436 682 ntTSL 3 BASIC10.62□□□□□ -0.71
HSPG2P98160 ZFR2-208ENST00000592398 532 ntTSL 5 BASIC10.62□□□□□ -0.71
HSPG2P98160 ODC1-201ENST00000234111 2653 ntAPPRIS P1 TSL 1 (best) BASIC10.62□□□□□ -0.71
HSPG2P98160 ZNF787-202ENST00000587279 1657 ntTSL 2 BASIC10.61□□□□□ -0.71
HSPG2P98160 KLC1-208ENST00000452929 2453 ntTSL 5 BASIC10.61□□□□□ -0.71
HSPG2P98160 PLAC9-201ENST00000372263 785 ntAPPRIS P2 TSL 1 (best) BASIC10.61□□□□□ -0.71
HSPG2P98160 IGHV3-23-201ENST00000390609 432 ntAPPRIS P1 BASIC10.61□□□□□ -0.71
HSPG2P98160 AC008278.1-201ENST00000431117 568 ntTSL 4 BASIC10.61□□□□□ -0.71
HSPG2P98160 DSCR3-207ENST00000476950 937 ntTSL 2 BASIC10.61□□□□□ -0.71
HSPG2P98160 AC109479.1-201ENST00000519603 624 ntTSL 2 BASIC10.61□□□□□ -0.71
HSPG2P98160 BARD1-209ENST00000613192 703 ntTSL 1 (best) BASIC10.61□□□□□ -0.71
HSPG2P98160 CCDC28A-202ENST00000611852 1505 ntTSL 1 (best) BASIC10.61□□□□□ -0.71
HSPG2P98160 FAM217A-201ENST00000274673 2265 ntAPPRIS P1 TSL 1 (best) BASIC10.61□□□□□ -0.71
HSPG2P98160 CD55-201ENST00000314754 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC10.61□□□□□ -0.71
Retrieved 100 of 98,524 protein–RNA pairs in 36.3 ms