Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 PDP1-208ENST00000520728 2554 ntAPPRIS P3 TSL 1 (best) BASIC12.4□□□□□ -0.42
PRKDCP78527 TEAD2-210ENST00000601519 2167 ntAPPRIS ALT1 TSL 1 (best) BASIC12.4□□□□□ -0.42
PRKDCP78527 FDXR-205ENST00000544854 1827 ntTSL 2 BASIC12.4□□□□□ -0.42
PRKDCP78527 TNNI1-203ENST00000367312 1100 ntAPPRIS P2 TSL 5 BASIC12.4□□□□□ -0.42
PRKDCP78527 SZT2-202ENST00000372450 1191 ntAPPRIS ALT2 TSL 1 (best) BASIC12.4□□□□□ -0.42
PRKDCP78527 PSMB5-204ENST00000460922 729 ntTSL 2 BASIC12.4□□□□□ -0.42
PRKDCP78527 RPS5-209ENST00000601521 1203 ntAPPRIS P1 TSL 5 BASIC12.4□□□□□ -0.42
PRKDCP78527 NDUFS7-218ENST00000618074 688 ntTSL 5 BASIC12.4□□□□□ -0.42
PRKDCP78527 CORO1A-216ENST00000570045 1622 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
PRKDCP78527 WDR45-234ENST00000634838 1545 ntTSL 5 BASIC12.4□□□□□ -0.42
PRKDCP78527 ANKRD18DP-201ENST00000335478 2171 ntTSL 2 BASIC12.4□□□□□ -0.42
PRKDCP78527 PAFAH1B2-202ENST00000419197 2517 ntTSL 2 BASIC12.4□□□□□ -0.42
PRKDCP78527 ZNF324B-202ENST00000545523 2368 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
PRKDCP78527 RAB29-201ENST00000235932 1723 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
PRKDCP78527 SYTL1-208ENST00000543823 2229 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
PRKDCP78527 SPDYE19P-201ENST00000338590 713 ntBASIC12.4□□□□□ -0.42
PRKDCP78527 SNHG17-203ENST00000417578 880 ntTSL 2 BASIC12.4□□□□□ -0.42
PRKDCP78527 RPL28-204ENST00000431533 590 ntTSL 2 BASIC12.4□□□□□ -0.42
PRKDCP78527 MOGAT1-201ENST00000446656 1048 ntAPPRIS P1 TSL 5 BASIC12.4□□□□□ -0.42
PRKDCP78527 AC135586.1-201ENST00000539323 574 ntBASIC12.4□□□□□ -0.42
PRKDCP78527 FOS-206ENST00000555347 1280 ntTSL 2 BASIC12.4□□□□□ -0.42
PRKDCP78527 AC006453.2-202ENST00000635968 827 ntTSL 5 BASIC12.4□□□□□ -0.42
PRKDCP78527 DMRT2-202ENST00000302441 1495 ntTSL 5 BASIC12.4□□□□□ -0.42
PRKDCP78527 PSMD6-210ENST00000492933 1495 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
PRKDCP78527 TCP11-202ENST00000311875 2166 ntAPPRIS ALT2 TSL 1 (best) BASIC12.4□□□□□ -0.42
PRKDCP78527 ECSIT-209ENST00000591104 1319 ntAPPRIS ALT2 TSL 1 (best) BASIC12.4□□□□□ -0.42
PRKDCP78527 AC093525.8-201ENST00000624099 1342 ntBASIC12.4□□□□□ -0.42
PRKDCP78527 TRIM17-201ENST00000295033 1730 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.43
PRKDCP78527 TRIM17-204ENST00000366698 1748 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.43
PRKDCP78527 BIN1-207ENST00000357970 2497 ntTSL 1 (best) BASIC12.4□□□□□ -0.43
PRKDCP78527 MARK4-210ENST00000620044 2105 ntTSL 5 BASIC12.4□□□□□ -0.43
PRKDCP78527 SHF-201ENST00000290894 2500 ntAPPRIS P3 TSL 2 BASIC12.4□□□□□ -0.43
PRKDCP78527 BUD31-201ENST00000222969 1035 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
PRKDCP78527 BLVRB-201ENST00000263368 873 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
PRKDCP78527 PDE6D-201ENST00000287600 1175 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
PRKDCP78527 EIF1AX-201ENST00000379593 765 ntTSL 3 BASIC12.39□□□□□ -0.43
PRKDCP78527 AL121753.1-201ENST00000444717 529 ntAPPRIS P1 TSL 3 BASIC12.39□□□□□ -0.43
PRKDCP78527 STK19B-204ENST00000512515 211 ntBASIC12.39□□□□□ -0.43
PRKDCP78527 CTBP2-214ENST00000531469 1918 ntAPPRIS P1 TSL 2 BASIC12.39□□□□□ -0.43
PRKDCP78527 COMMD5-202ENST00000402718 1305 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
PRKDCP78527 POLR1D-207ENST00000621089 1606 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
PRKDCP78527 ZMYND11-214ENST00000509513 2065 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
PRKDCP78527 SMIM3-201ENST00000526627 2332 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
PRKDCP78527 SIKE1-201ENST00000060969 2190 ntAPPRIS P3 TSL 1 (best) BASIC12.39□□□□□ -0.43
PRKDCP78527 EEF1B2-201ENST00000236957 844 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
PRKDCP78527 C1QA-201ENST00000374642 1143 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
PRKDCP78527 CCL25-203ENST00000390669 924 ntAPPRIS P3 TSL 1 (best) BASIC12.39□□□□□ -0.43
PRKDCP78527 SETD4-205ENST00000399208 1165 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
PRKDCP78527 AC099336.1-201ENST00000417053 1171 ntBASIC12.39□□□□□ -0.43
PRKDCP78527 AC087294.1-202ENST00000439136 487 ntTSL 3 BASIC12.39□□□□□ -0.43
PRKDCP78527 BRF2-202ENST00000520601 1192 ntTSL 3 BASIC12.39□□□□□ -0.43
PRKDCP78527 CATSPERZ-203ENST00000539943 917 ntAPPRIS ALT2 TSL 2 BASIC12.39□□□□□ -0.43
PRKDCP78527 PMF1-BGLAP-204ENST00000567140 655 ntTSL 3 BASIC12.39□□□□□ -0.43
PRKDCP78527 AC087294.1-201ENST00000580291 1152 ntTSL 2 BASIC12.39□□□□□ -0.43
PRKDCP78527 AP000894.3-201ENST00000582554 351 ntTSL 5 BASIC12.39□□□□□ -0.43
PRKDCP78527 IFNL3-202ENST00000613087 734 ntAPPRIS ALT2 TSL 1 (best) BASIC12.39□□□□□ -0.43
PRKDCP78527 AC092978.1-201ENST00000474979 1309 ntTSL 5 BASIC12.39□□□□□ -0.43
PRKDCP78527 AC092978.1-202ENST00000637590 1327 ntBASIC12.39□□□□□ -0.43
PRKDCP78527 GRB14-201ENST00000263915 2382 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
PRKDCP78527 TCTN1-223ENST00000550703 2149 ntTSL 2 BASIC12.39□□□□□ -0.43
PRKDCP78527 FOXO1B-201ENST00000504678 1527 ntBASIC12.39□□□□□ -0.43
PRKDCP78527 MCU-202ENST00000373053 2949 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
PRKDCP78527 GCOM1-202ENST00000380569 1846 ntAPPRIS P3 TSL 2 BASIC12.39□□□□□ -0.43
PRKDCP78527 MUC1-228ENST00000620103 1811 ntAPPRIS ALT2 TSL 5 BASIC12.39□□□□□ -0.43
PRKDCP78527 NDUFA2-201ENST00000252102 804 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
PRKDCP78527 LINC00642-202ENST00000442515 670 ntTSL 3 BASIC12.39□□□□□ -0.43
PRKDCP78527 AL163974.1-201ENST00000554540 466 ntTSL 5 BASIC12.39□□□□□ -0.43
PRKDCP78527 TSR1-204ENST00000576112 1290 ntTSL 5 BASIC12.39□□□□□ -0.43
PRKDCP78527 AC133552.6-201ENST00000613406 534 ntBASIC12.39□□□□□ -0.43
PRKDCP78527 ATOH8-201ENST00000306279 2438 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
PRKDCP78527 UNKL-205ENST00000397464 2180 ntTSL 2 BASIC12.39□□□□□ -0.43
PRKDCP78527 BDKRB1-201ENST00000216629 1687 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
PRKDCP78527 GDPD3-202ENST00000406256 1397 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
PRKDCP78527 AC012531.2-201ENST00000512206 1389 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
PRKDCP78527 PLD6-201ENST00000321560 2560 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
PRKDCP78527 TMEM129-201ENST00000303277 2678 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
PRKDCP78527 RIN1-201ENST00000311320 2693 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
PRKDCP78527 SAE1-203ENST00000413379 2313 ntTSL 2 BASIC12.39□□□□□ -0.43
PRKDCP78527 ECE1-205ENST00000436918 2328 ntTSL 2 BASIC12.39□□□□□ -0.43
PRKDCP78527 RANBP1-201ENST00000331821 837 ntAPPRIS P3 TSL 1 (best) BASIC12.39□□□□□ -0.43
PRKDCP78527 AGER-204ENST00000375067 1250 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
PRKDCP78527 HMGB2-203ENST00000446922 1175 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
PRKDCP78527 AC024619.2-201ENST00000581964 517 ntTSL 5 BASIC12.39□□□□□ -0.43
PRKDCP78527 Metazoa_SRP.166-201ENST00000612530 253 ntBASIC12.39□□□□□ -0.43
PRKDCP78527 AC018529.1-201ENST00000613063 361 ntBASIC12.39□□□□□ -0.43
PRKDCP78527 AC008267.7-201ENST00000624570 1194 ntBASIC12.39□□□□□ -0.43
PRKDCP78527 ZNF773-204ENST00000598770 2019 ntAPPRIS ALT2 TSL 2 BASIC12.39□□□□□ -0.43
PRKDCP78527 NYAP1-202ENST00000454988 2777 ntTSL 5 BASIC12.39□□□□□ -0.43
PRKDCP78527 POLD3-203ENST00000527458 2122 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
PRKDCP78527 INO80E-207ENST00000563197 2103 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
PRKDCP78527 FHL1-219ENST00000618438 2178 ntTSL 3 BASIC12.38□□□□□ -0.43
PRKDCP78527 FOXN3-214ENST00000557258 2692 ntAPPRIS P3 TSL 1 (best) BASIC12.38□□□□□ -0.43
PRKDCP78527 TINAGL1-202ENST00000457433 2140 ntAPPRIS ALT2 TSL 2 BASIC12.38□□□□□ -0.43
PRKDCP78527 RNF151-201ENST00000321392 786 ntAPPRIS ALT2 TSL 1 (best) BASIC12.38□□□□□ -0.43
PRKDCP78527 SNCG-201ENST00000348795 684 ntTSL 2 BASIC12.38□□□□□ -0.43
PRKDCP78527 PSMB9-207ENST00000374859 782 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
PRKDCP78527 HILS1-201ENST00000504307 1219 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
PRKDCP78527 CNOT8-214ENST00000520671 923 ntTSL 2 BASIC12.38□□□□□ -0.43
PRKDCP78527 RNF151-203ENST00000569714 796 ntAPPRIS P2 TSL 1 (best) BASIC12.38□□□□□ -0.43
PRKDCP78527 PIMREG-202ENST00000570337 891 ntTSL 5 BASIC12.38□□□□□ -0.43
Retrieved 100 of 98,524 protein–RNA pairs in 51.8 ms