Protein–RNA interactions for Protein: P62068

USP46, Ubiquitin carboxyl-terminal hydrolase 46, humanhuman

Predictions only

Length 366 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP46P62068 EIF3B-201ENST00000360876 3055 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
USP46P62068 TMEM59-202ENST00000371337 600 ntTSL 2 BASIC18.31■□□□□ 0.52
USP46P62068 GYG2P1-204ENST00000382966 639 ntTSL 3 BASIC18.31■□□□□ 0.52
USP46P62068 MIR940-201ENST00000401276 94 ntBASIC18.31■□□□□ 0.52
USP46P62068 ELK2BP-201ENST00000415014 1224 ntBASIC18.31■□□□□ 0.52
USP46P62068 AC064807.1-202ENST00000423716 936 ntTSL 2 BASIC18.31■□□□□ 0.52
USP46P62068 AL807752.7-201ENST00000471521 989 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
USP46P62068 TMEM106C-214ENST00000550161 976 ntTSL 3 BASIC18.31■□□□□ 0.52
USP46P62068 SEC23A-206ENST00000553970 574 ntTSL 4 BASIC18.31■□□□□ 0.52
USP46P62068 ZFPM1-204ENST00000563351 808 ntTSL 2 BASIC18.31■□□□□ 0.52
USP46P62068 AC006557.2-201ENST00000592985 1240 ntBASIC18.31■□□□□ 0.52
USP46P62068 HMGN3-203ENST00000620514 1010 ntTSL 3 BASIC18.31■□□□□ 0.52
USP46P62068 SCP2-202ENST00000371513 2003 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
USP46P62068 ACP2-206ENST00000529444 1719 ntTSL 2 BASIC18.31■□□□□ 0.52
USP46P62068 C10orf111-201ENST00000624760 1714 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
USP46P62068 LDLRAP1-201ENST00000374338 2940 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
USP46P62068 SCOC-208ENST00000510586 2193 ntAPPRIS ALT1 TSL 5 BASIC18.31■□□□□ 0.52
USP46P62068 TRNT1-205ENST00000402675 1935 ntTSL 2 BASIC18.31■□□□□ 0.52
USP46P62068 AC068888.1-203ENST00000546566 1650 ntTSL 2 BASIC18.31■□□□□ 0.52
USP46P62068 TSPAN17-201ENST00000298564 2810 ntTSL 2 BASIC18.31■□□□□ 0.52
USP46P62068 SDK1-202ENST00000404826 10397 ntAPPRIS P2 TSL 1 (best) BASIC18.3■□□□□ 0.52
USP46P62068 CHRNG-201ENST00000389492 1398 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
USP46P62068 ZNF259P1-201ENST00000407656 1365 ntBASIC18.3■□□□□ 0.52
USP46P62068 IRF5-210ENST00000477535 1374 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
USP46P62068 GYG1-214ENST00000627418 1831 ntTSL 5 BASIC18.3■□□□□ 0.52
USP46P62068 CACNA1B-206ENST00000371372 9790 ntAPPRIS P4 TSL 5 BASIC18.3■□□□□ 0.52
USP46P62068 MTG1-201ENST00000317502 1560 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
USP46P62068 TRH-202ENST00000507066 1580 ntAPPRIS ALT1 TSL 5 BASIC18.3■□□□□ 0.52
USP46P62068 HTR1A-201ENST00000323865 1778 ntAPPRIS P1 BASIC18.3■□□□□ 0.52
USP46P62068 RBPMS-203ENST00000339877 1341 ntAPPRIS ALT1 TSL 1 (best) BASIC18.3■□□□□ 0.52
USP46P62068 FOXP3-201ENST00000376197 1326 ntTSL 2 BASIC18.3■□□□□ 0.52
USP46P62068 PTK6-201ENST00000217185 2401 ntTSL 2 BASIC18.3■□□□□ 0.52
USP46P62068 NFS1-202ENST00000374085 2645 ntTSL 2 BASIC18.3■□□□□ 0.52
USP46P62068 TADA3-201ENST00000301964 2355 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
USP46P62068 DIDO1-203ENST00000370366 2383 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
USP46P62068 ACOXL-205ENST00000439055 2373 ntTSL 2 BASIC18.3■□□□□ 0.52
USP46P62068 ISYNA1-202ENST00000457269 1703 ntTSL 2 BASIC18.3■□□□□ 0.52
USP46P62068 ZAR1L-201ENST00000345108 1103 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
USP46P62068 BECN1-201ENST00000361523 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
USP46P62068 CTSA-204ENST00000372484 2149 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
USP46P62068 IGKV4-1-201ENST00000390243 538 ntAPPRIS P1 BASIC18.3■□□□□ 0.52
USP46P62068 CLDN14-205ENST00000399139 1231 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
USP46P62068 SNHG11-204ENST00000420006 720 ntTSL 3 BASIC18.3■□□□□ 0.52
USP46P62068 SNHG11-206ENST00000432153 1181 ntTSL 3 BASIC18.3■□□□□ 0.52
USP46P62068 AC078883.2-201ENST00000441212 558 ntTSL 3 BASIC18.3■□□□□ 0.52
USP46P62068 AC067930.3-201ENST00000524808 701 ntTSL 3 BASIC18.3■□□□□ 0.52
USP46P62068 CALM1-205ENST00000553542 877 ntTSL 5 BASIC18.3■□□□□ 0.52
USP46P62068 L2HGDH-205ENST00000555423 841 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
USP46P62068 AC008992.1-201ENST00000591132 446 ntTSL 2 BASIC18.3■□□□□ 0.52
USP46P62068 AL590235.2-202ENST00000602543 594 ntTSL 5 BASIC18.3■□□□□ 0.52
USP46P62068 Z83851.2-201ENST00000609564 659 ntBASIC18.3■□□□□ 0.52
USP46P62068 AC092902.2-205ENST00000622381 394 ntTSL 5 BASIC18.3■□□□□ 0.52
USP46P62068 WDR90-202ENST00000315764 1454 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
USP46P62068 BAGE2-202ENST00000474011 1482 ntTSL 2 BASIC18.3■□□□□ 0.52
USP46P62068 CXXC5-211ENST00000511048 1892 ntAPPRIS P1 TSL 2 BASIC18.3■□□□□ 0.52
USP46P62068 LINC00304-203ENST00000565008 1864 ntBASIC18.3■□□□□ 0.52
USP46P62068 CRB3-203ENST00000598494 1443 ntAPPRIS ALT2 TSL 2 BASIC18.3■□□□□ 0.52
USP46P62068 GPSM2-201ENST00000264126 3032 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
USP46P62068 AVPR1A-201ENST00000299178 5963 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
USP46P62068 HGFAC-201ENST00000382774 2159 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
USP46P62068 EWSR1-202ENST00000332035 1989 ntAPPRIS ALT2 TSL 2 BASIC18.3■□□□□ 0.52
USP46P62068 AC097637.2-201ENST00000624096 1997 ntBASIC18.3■□□□□ 0.52
USP46P62068 GFAP-203ENST00000435360 1779 ntTSL 2 BASIC18.3■□□□□ 0.52
USP46P62068 PGRMC1-202ENST00000535419 1762 ntTSL 2 BASIC18.3■□□□□ 0.52
USP46P62068 PIGF-201ENST00000281382 1372 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
USP46P62068 C12orf65-202ENST00000366329 1901 ntAPPRIS P2 TSL 2 BASIC18.29■□□□□ 0.52
USP46P62068 DBNL-213ENST00000452943 1513 ntTSL 2 BASIC18.29■□□□□ 0.52
USP46P62068 TMEM131-201ENST00000186436 6640 ntAPPRIS P1 TSL 5 BASIC18.29■□□□□ 0.52
USP46P62068 SLC35A3-217ENST00000639807 2767 ntTSL 5 BASIC18.29■□□□□ 0.52
USP46P62068 ACTN3-203ENST00000513398 2939 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
USP46P62068 MYCLP1-201ENST00000372451 1075 ntBASIC18.29■□□□□ 0.52
USP46P62068 PDHA1-203ENST00000379805 734 ntTSL 2 BASIC18.29■□□□□ 0.52
USP46P62068 AC009947.1-201ENST00000444350 727 ntBASIC18.29■□□□□ 0.52
USP46P62068 AC091182.1-202ENST00000518765 713 ntTSL 2 BASIC18.29■□□□□ 0.52
USP46P62068 KRT18P58-201ENST00000527480 1120 ntBASIC18.29■□□□□ 0.52
USP46P62068 CHMP1A-208ENST00000550102 803 ntTSL 5 BASIC18.29■□□□□ 0.52
USP46P62068 ETFA-208ENST00000559602 792 ntTSL 3 BASIC18.29■□□□□ 0.52
USP46P62068 ARMC7-203ENST00000581078 1002 ntTSL 2 BASIC18.29■□□□□ 0.52
USP46P62068 ARMC7-204ENST00000582136 1204 ntTSL 2 BASIC18.29■□□□□ 0.52
USP46P62068 IER2-202ENST00000587885 1291 ntAPPRIS P1 TSL 3 BASIC18.29■□□□□ 0.52
USP46P62068 NUTM2B-AS1-211ENST00000601369 1233 ntTSL 2 BASIC18.29■□□□□ 0.52
USP46P62068 AC244517.3-201ENST00000616254 1235 ntBASIC18.29■□□□□ 0.52
USP46P62068 ADPGK-AS1-201ENST00000563592 2730 ntTSL 2 BASIC18.29■□□□□ 0.52
USP46P62068 ZNF517-201ENST00000359971 2335 ntAPPRIS P1 TSL 4 BASIC18.29■□□□□ 0.52
USP46P62068 TCIRG1-201ENST00000265686 2677 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
USP46P62068 NPBWR1-201ENST00000331251 2687 ntAPPRIS P1 BASIC18.29■□□□□ 0.52
USP46P62068 NCF1C-201ENST00000438382 1427 ntBASIC18.29■□□□□ 0.52
USP46P62068 DCLK1-203ENST00000379892 2101 ntTSL 5 BASIC18.29■□□□□ 0.52
USP46P62068 SPAG6-203ENST00000376624 2605 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
USP46P62068 OPN5-204ENST00000489301 1931 ntAPPRIS ALT2 TSL 5 BASIC18.29■□□□□ 0.52
USP46P62068 NUDT9-201ENST00000302174 1701 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
USP46P62068 PSRC1-201ENST00000369903 1710 ntAPPRIS P3 TSL 5 BASIC18.29■□□□□ 0.52
USP46P62068 FOXP3-206ENST00000557224 1371 ntTSL 2 BASIC18.29■□□□□ 0.52
USP46P62068 TBC1D4-204ENST00000431480 6347 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
USP46P62068 C16orf59-204ENST00000563531 1864 ntAPPRIS ALT2 TSL 5 BASIC18.29■□□□□ 0.52
USP46P62068 MFSD11-220ENST00000621483 2850 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
USP46P62068 COPS8-202ENST00000392008 1654 ntTSL 2 BASIC18.28■□□□□ 0.52
USP46P62068 CLN3-216ENST00000565316 1318 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
USP46P62068 ZNRF2-201ENST00000323037 3460 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
USP46P62068 GHDC-202ENST00000414034 2496 ntTSL 2 BASIC18.28■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 25.3 ms