Protein–RNA interactions for Protein: P55285

CDH6, Cadherin-6, humanhuman

Predictions only

Length 790 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH6P55285 PTP4A3-201ENST00000329397 2785 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
CDH6P55285 DPF2-205ENST00000528416 2799 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
CDH6P55285 KLHL21-204ENST00000467612 1056 ntTSL 3 BASIC18.13■□□□□ 0.49
CDH6P55285 NT5C2-211ENST00000470299 249 ntTSL 5 BASIC18.13■□□□□ 0.49
CDH6P55285 AC104819.1-201ENST00000504587 486 ntBASIC18.13■□□□□ 0.49
CDH6P55285 FAM53C-211ENST00000513056 923 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
CDH6P55285 AC015712.1-203ENST00000559331 593 ntTSL 3 BASIC18.13■□□□□ 0.49
CDH6P55285 STK25P1-201ENST00000585406 838 ntBASIC18.13■□□□□ 0.49
CDH6P55285 LCE1E-203ENST00000619588 267 ntAPPRIS ALT2 TSL 5 BASIC18.13■□□□□ 0.49
CDH6P55285 CYP1B1-AS1-214ENST00000620177 554 ntTSL 4 BASIC18.13■□□□□ 0.49
CDH6P55285 AC093458.2-201ENST00000623150 629 ntBASIC18.13■□□□□ 0.49
CDH6P55285 WLS-205ENST00000370976 2332 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
CDH6P55285 PLEKHG4-205ENST00000450733 4480 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
CDH6P55285 MAP7-209ENST00000618822 4497 ntAPPRIS ALT2 TSL 5 BASIC18.13■□□□□ 0.49
CDH6P55285 SEPHS1-202ENST00000378614 2387 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
CDH6P55285 TRA2A-212ENST00000621813 1931 ntAPPRIS ALT2 TSL 2 BASIC18.13■□□□□ 0.49
CDH6P55285 NOS3-210ENST00000484524 2537 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
CDH6P55285 RPL13P5-202ENST00000412023 1438 ntTSL 2 BASIC18.13■□□□□ 0.49
CDH6P55285 TMEM106C-203ENST00000449758 1414 ntTSL 2 BASIC18.13■□□□□ 0.49
CDH6P55285 PODXL-201ENST00000322985 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
CDH6P55285 DTX2-206ENST00000430490 2623 ntAPPRIS P3 TSL 1 (best) BASIC18.13■□□□□ 0.49
CDH6P55285 AL353593.2-201ENST00000602529 1483 ntBASIC18.13■□□□□ 0.49
CDH6P55285 WASF1-205ENST00000392587 2675 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
CDH6P55285 WWTR1-201ENST00000360632 2103 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
CDH6P55285 FUT8-AS1-201ENST00000621019 1521 ntBASIC18.13■□□□□ 0.49
CDH6P55285 CDH24-204ENST00000487137 3438 ntAPPRIS P1 TSL 5 BASIC18.13■□□□□ 0.49
CDH6P55285 MEF2A-204ENST00000557785 2854 ntAPPRIS ALT1 TSL 5 BASIC18.13■□□□□ 0.49
CDH6P55285 AC125494.1-203ENST00000396799 1622 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
CDH6P55285 AC116353.5-201ENST00000638148 1699 ntBASIC18.12■□□□□ 0.49
CDH6P55285 ZSCAN10-202ENST00000538082 2350 ntTSL 4 BASIC18.12■□□□□ 0.49
CDH6P55285 PWP1-202ENST00000541166 1722 ntTSL 2 BASIC18.12■□□□□ 0.49
CDH6P55285 MAPK11-201ENST00000330651 2431 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
CDH6P55285 OR6D1P-203ENST00000641209 4860 ntBASIC18.12■□□□□ 0.49
CDH6P55285 SH2D3C-205ENST00000420366 2682 ntTSL 2 BASIC18.12■□□□□ 0.49
CDH6P55285 LPAR5-202ENST00000431922 2695 ntAPPRIS P1 TSL 2 BASIC18.12■□□□□ 0.49
CDH6P55285 TSPAN7-202ENST00000378482 1909 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
CDH6P55285 ICAM3-205ENST00000589261 2024 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
CDH6P55285 GOLGA2P9-203ENST00000600260 2033 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
CDH6P55285 ARMC12-202ENST00000373866 1254 ntAPPRIS P1 TSL 3 BASIC18.12■□□□□ 0.49
CDH6P55285 PFDN6-201ENST00000374606 740 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
CDH6P55285 GGT1-207ENST00000404532 853 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
CDH6P55285 ZNF655-215ENST00000440391 1198 ntTSL 2 BASIC18.12■□□□□ 0.49
CDH6P55285 POLR2M-203ENST00000464277 910 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
CDH6P55285 RPP14-206ENST00000466547 805 ntAPPRIS P1 TSL 3 BASIC18.12■□□□□ 0.49
CDH6P55285 ST20-202ENST00000485386 529 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
CDH6P55285 AC106771.1-201ENST00000502209 372 ntTSL 2 BASIC18.12■□□□□ 0.49
CDH6P55285 BARHL1-202ENST00000542090 1197 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
CDH6P55285 AC003688.1-201ENST00000577138 489 ntAPPRIS P1 TSL 3 BASIC18.12■□□□□ 0.49
CDH6P55285 AC138207.7-201ENST00000584499 668 ntTSL 5 BASIC18.12■□□□□ 0.49
CDH6P55285 AC092329.2-201ENST00000598402 547 ntBASIC18.12■□□□□ 0.49
CDH6P55285 CLDN14-203ENST00000399136 1330 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
CDH6P55285 APOA4-201ENST00000357780 1473 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
CDH6P55285 AMMECR1-201ENST00000262844 5504 ntAPPRIS P3 TSL 1 (best) BASIC18.12■□□□□ 0.49
CDH6P55285 DNM2-201ENST00000355667 3541 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
CDH6P55285 ITGB4-201ENST00000200181 5919 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
CDH6P55285 PTP4A1-201ENST00000370651 5088 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
CDH6P55285 TRIM17-201ENST00000295033 1730 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
CDH6P55285 ANGPTL4-202ENST00000393962 1705 ntTSL 5 BASIC18.12■□□□□ 0.49
CDH6P55285 NEURL1B-201ENST00000369800 6424 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
CDH6P55285 WDR13-202ENST00000376729 5469 ntAPPRIS P1 TSL 5 BASIC18.12■□□□□ 0.49
CDH6P55285 INTS4P1-201ENST00000438455 1935 ntBASIC18.11■□□□□ 0.49
CDH6P55285 TRAPPC11-201ENST00000334690 4552 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CDH6P55285 PPP3CA-203ENST00000394854 4685 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CDH6P55285 TBXAS1-210ENST00000458722 2057 ntTSL 2 BASIC18.11■□□□□ 0.49
CDH6P55285 TRA2A-211ENST00000538367 2142 ntAPPRIS ALT2 TSL 2 BASIC18.11■□□□□ 0.49
CDH6P55285 CAMK2B-204ENST00000350811 2292 ntAPPRIS P4 TSL 2 BASIC18.11■□□□□ 0.49
CDH6P55285 ITGB2-AS1-202ENST00000441379 2282 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
CDH6P55285 ADRA1A-206ENST00000380586 2304 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
CDH6P55285 ZGLP1-202ENST00000403903 2303 ntAPPRIS P2 TSL 1 (best) BASIC18.11■□□□□ 0.49
CDH6P55285 GATAD2A-202ENST00000360315 5671 ntAPPRIS P3 TSL 5 BASIC18.11■□□□□ 0.49
CDH6P55285 PCDHA12-202ENST00000613593 2588 ntBASIC18.11■□□□□ 0.49
CDH6P55285 ZBTB44-201ENST00000357899 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
CDH6P55285 RPS12-201ENST00000230050 631 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CDH6P55285 NXPH2-201ENST00000272641 1052 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CDH6P55285 MED30-201ENST00000297347 985 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CDH6P55285 CORT-201ENST00000377049 1130 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CDH6P55285 RCN1P2-201ENST00000398357 915 ntBASIC18.11■□□□□ 0.49
CDH6P55285 CTNS-203ENST00000399306 803 ntTSL 3 BASIC18.11■□□□□ 0.49
CDH6P55285 ZNF346-205ENST00000506693 1276 ntTSL 2 BASIC18.11■□□□□ 0.49
CDH6P55285 NDUFB9-202ENST00000517367 636 ntTSL 3 BASIC18.11■□□□□ 0.49
CDH6P55285 RAB6A-207ENST00000541588 758 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
CDH6P55285 ABCD4-228ENST00000557588 763 ntTSL 3 BASIC18.11■□□□□ 0.49
CDH6P55285 AC010632.1-201ENST00000590376 572 ntTSL 4 BASIC18.11■□□□□ 0.49
CDH6P55285 AC243773.1-201ENST00000614759 544 ntTSL 5 BASIC18.11■□□□□ 0.49
CDH6P55285 SCAMP4-213ENST00000621748 1172 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
CDH6P55285 FBXL22-204ENST00000638704 729 ntAPPRIS ALT2 TSL 2 BASIC18.11■□□□□ 0.49
CDH6P55285 UNKL-202ENST00000301712 1431 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
CDH6P55285 CFC1B-203ENST00000620207 1444 ntTSL 5 BASIC18.11■□□□□ 0.49
CDH6P55285 CFC1-203ENST00000621673 1444 ntTSL 2 BASIC18.11■□□□□ 0.49
CDH6P55285 ATP6V0E2-202ENST00000425642 1649 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CDH6P55285 AL355315.1-201ENST00000370649 1848 ntAPPRIS P1 TSL 2 BASIC18.11■□□□□ 0.49
CDH6P55285 ADAD1-203ENST00000388725 1918 ntTSL 2 BASIC18.11■□□□□ 0.49
CDH6P55285 GABARAPL1-201ENST00000266458 1957 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CDH6P55285 HOXB1-201ENST00000239174 2020 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CDH6P55285 TRAPPC2L-201ENST00000301021 2215 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CDH6P55285 OGFR-201ENST00000290291 2410 ntAPPRIS P2 TSL 1 (best) BASIC18.11■□□□□ 0.49
CDH6P55285 GALNT9-201ENST00000328957 2410 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CDH6P55285 HSF2-202ENST00000452194 2643 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
CDH6P55285 RNF7-201ENST00000273480 2763 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CDH6P55285 SCRIB-203ENST00000377533 5108 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 38.8 ms