Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 POU4F3-201ENST00000230732 1182 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
LIG3P49916 HEBP2-201ENST00000367697 844 ntTSL 2 BASIC18.37■□□□□ 0.53
LIG3P49916 INSL3-202ENST00000379695 899 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
LIG3P49916 MIR149-201ENST00000384879 89 ntBASIC18.37■□□□□ 0.53
LIG3P49916 ROMO1-205ENST00000397416 288 ntAPPRIS P1 TSL 3 BASIC18.37■□□□□ 0.53
LIG3P49916 LINC02106-201ENST00000506534 606 ntTSL 2 BASIC18.37■□□□□ 0.53
LIG3P49916 FAM53C-211ENST00000513056 923 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
LIG3P49916 SDR39U1-202ENST00000538105 1041 ntTSL 2 BASIC18.37■□□□□ 0.53
LIG3P49916 AC011498.5-201ENST00000592027 486 ntBASIC18.37■□□□□ 0.53
LIG3P49916 AC093458.2-201ENST00000623150 629 ntBASIC18.37■□□□□ 0.53
LIG3P49916 RNF217-211ENST00000560949 5145 ntAPPRIS ALT2 TSL 5 BASIC18.37■□□□□ 0.53
LIG3P49916 ANKS6-202ENST00000375019 2586 ntTSL 5 BASIC18.37■□□□□ 0.53
LIG3P49916 FLOT2-202ENST00000394908 2618 ntAPPRIS P3 TSL 1 (best) BASIC18.37■□□□□ 0.53
LIG3P49916 MAD1L1-202ENST00000399654 2762 ntAPPRIS P1 TSL 5 BASIC18.37■□□□□ 0.53
LIG3P49916 ARSI-203ENST00000515301 1429 ntTSL 4 BASIC18.37■□□□□ 0.53
LIG3P49916 PHKA1-205ENST00000541944 5944 ntAPPRIS ALT1 TSL 1 (best) BASIC18.37■□□□□ 0.53
LIG3P49916 FAM110A-201ENST00000246100 1619 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
LIG3P49916 OGFOD3-202ENST00000329197 1652 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
LIG3P49916 ANXA6-211ENST00000521512 1793 ntTSL 5 BASIC18.37■□□□□ 0.53
LIG3P49916 NFATC4-203ENST00000422617 5491 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
LIG3P49916 BATF2-201ENST00000301887 2142 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
LIG3P49916 USP39-201ENST00000323701 2177 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
LIG3P49916 HNF1A-215ENST00000615446 2344 ntTSL 5 BASIC18.37■□□□□ 0.53
LIG3P49916 ADGRB2-206ENST00000398556 4879 ntAPPRIS ALT2 TSL 5 BASIC18.37■□□□□ 0.53
LIG3P49916 FEZF1-AS1-202ENST00000428449 2653 ntTSL 2 BASIC18.36■□□□□ 0.53
LIG3P49916 MAP3K9-201ENST00000381250 4025 ntAPPRIS ALT2 TSL 5 BASIC18.36■□□□□ 0.53
LIG3P49916 ADAM23-201ENST00000264377 6330 ntAPPRIS P2 TSL 1 (best) BASIC18.36■□□□□ 0.53
LIG3P49916 TMEM171-201ENST00000287773 1247 ntAPPRIS ALT1 TSL 5 BASIC18.36■□□□□ 0.53
LIG3P49916 AGXT-201ENST00000307503 1865 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
LIG3P49916 ZNF575-201ENST00000314228 1298 ntAPPRIS P1 TSL 2 BASIC18.36■□□□□ 0.53
LIG3P49916 FSCN2-201ENST00000334850 1551 ntTSL 5 BASIC18.36■□□□□ 0.53
LIG3P49916 TADA3-202ENST00000343450 2554 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
LIG3P49916 ENTPD2-202ENST00000355097 2095 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
LIG3P49916 PSTK-201ENST00000368887 1705 ntAPPRIS P2 TSL 1 (best) BASIC18.36■□□□□ 0.53
LIG3P49916 PCGF6-202ENST00000369847 2230 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
LIG3P49916 ICAM4-202ENST00000380770 1211 ntAPPRIS P3 TSL 1 (best) BASIC18.36■□□□□ 0.53
LIG3P49916 TM2D2-201ENST00000397070 1631 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
LIG3P49916 TICAM2-201ENST00000427199 3049 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
LIG3P49916 CBR1-203ENST00000439427 1024 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
LIG3P49916 TPRA1-204ENST00000450633 1865 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
LIG3P49916 HOXB-AS3-203ENST00000465846 434 ntTSL 3 BASIC18.36■□□□□ 0.53
LIG3P49916 KLHL21-204ENST00000467612 1056 ntTSL 3 BASIC18.36■□□□□ 0.53
LIG3P49916 RGMB-AS1-201ENST00000498871 1903 ntTSL 2 BASIC18.36■□□□□ 0.53
LIG3P49916 TMEM9B-AS1-201ENST00000525484 1053 ntTSL 5 BASIC18.36■□□□□ 0.53
LIG3P49916 SELENOS-203ENST00000526049 1188 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
LIG3P49916 TLE3-205ENST00000539550 2464 ntTSL 2 BASIC18.36■□□□□ 0.53
LIG3P49916 RPLP0-219ENST00000551150 1344 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
LIG3P49916 AC026471.3-201ENST00000565137 578 ntTSL 2 BASIC18.36■□□□□ 0.53
LIG3P49916 NTF4-201ENST00000593537 932 ntAPPRIS P1 BASIC18.36■□□□□ 0.53
LIG3P49916 LINC01785-201ENST00000598042 1112 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
LIG3P49916 AC069148.1-201ENST00000608741 768 ntBASIC18.36■□□□□ 0.53
LIG3P49916 WDR6-223ENST00000627177 207 ntTSL 2 BASIC18.36■□□□□ 0.53
LIG3P49916 KDM4B-201ENST00000159111 5593 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
LIG3P49916 CNTNAP3-201ENST00000297668 5064 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
LIG3P49916 LRCH2-202ENST00000538422 4868 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
LIG3P49916 PPP1R21-206ENST00000449090 3049 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
LIG3P49916 PTK6-202ENST00000542869 2931 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
LIG3P49916 LINC00595-204ENST00000434974 2692 ntTSL 2 BASIC18.36■□□□□ 0.53
LIG3P49916 LSP1-204ENST00000406638 2640 ntAPPRIS ALT2 TSL 2 BASIC18.36■□□□□ 0.53
LIG3P49916 TFR2-202ENST00000431692 2631 ntTSL 5 BASIC18.36■□□□□ 0.53
LIG3P49916 PPP1R3B-202ENST00000519699 2334 ntAPPRIS P1 TSL 2 BASIC18.35■□□□□ 0.53
LIG3P49916 AL353608.3-201ENST00000603200 2211 ntTSL 5 BASIC18.35■□□□□ 0.53
LIG3P49916 C17orf62-203ENST00000434650 2050 ntTSL 2 BASIC18.35■□□□□ 0.53
LIG3P49916 SLC25A35-202ENST00000577745 1860 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
LIG3P49916 PPT2-247ENST00000375143 1754 ntAPPRIS ALT2 TSL 5 BASIC18.35■□□□□ 0.53
LIG3P49916 UROS-202ENST00000368778 1556 ntTSL 2 BASIC18.35■□□□□ 0.53
LIG3P49916 HCLS1-202ENST00000428394 1560 ntTSL 2 BASIC18.35■□□□□ 0.53
LIG3P49916 AC009102.3-201ENST00000623118 1491 ntBASIC18.35■□□□□ 0.53
LIG3P49916 PTGER3-202ENST00000351052 1404 ntAPPRIS ALT2 TSL 5 BASIC18.35■□□□□ 0.53
LIG3P49916 SFXN1-201ENST00000321442 4231 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
LIG3P49916 AFTPH-201ENST00000238855 4113 ntAPPRIS ALT1 TSL 5 BASIC18.35■□□□□ 0.53
LIG3P49916 YKT6-201ENST00000223369 2696 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
LIG3P49916 UNC13A-206ENST00000552293 5314 ntAPPRIS ALT2 TSL 5 BASIC18.35■□□□□ 0.53
LIG3P49916 PARK7-201ENST00000338639 949 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
LIG3P49916 PTX4-202ENST00000440447 1117 ntTSL 5 BASIC18.35■□□□□ 0.53
LIG3P49916 DMKN-212ENST00000443640 842 ntAPPRIS ALT2 TSL 5 BASIC18.35■□□□□ 0.53
LIG3P49916 TTTY14-203ENST00000447937 920 ntTSL 3 BASIC18.35■□□□□ 0.53
LIG3P49916 LINC00595-207ENST00000476909 792 ntTSL 2 BASIC18.35■□□□□ 0.53
LIG3P49916 ACY1-210ENST00000494103 1298 ntTSL 3 BASIC18.35■□□□□ 0.53
LIG3P49916 NMU-205ENST00000511469 756 ntTSL 3 BASIC18.35■□□□□ 0.53
LIG3P49916 LY6E-209ENST00000521003 740 ntAPPRIS P2 TSL 2 BASIC18.35■□□□□ 0.53
LIG3P49916 COL4A2-201ENST00000360467 6281 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
LIG3P49916 VAV2-201ENST00000371850 4837 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
LIG3P49916 SIDT2-217ENST00000532062 2143 ntTSL 2 BASIC18.35■□□□□ 0.53
LIG3P49916 KCNN2-208ENST00000631899 2098 ntAPPRIS ALT2 TSL 5 BASIC18.35■□□□□ 0.53
LIG3P49916 PLXDC2-202ENST00000377242 2822 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
LIG3P49916 ESAM-201ENST00000278927 1826 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
LIG3P49916 MFGE8-202ENST00000268151 1752 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
LIG3P49916 CDS1-201ENST00000295887 4461 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
LIG3P49916 REPS2-201ENST00000303843 7771 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
LIG3P49916 SAP130-202ENST00000259235 4065 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
LIG3P49916 TRIM36-202ENST00000379617 1322 ntTSL 2 BASIC18.34■□□□□ 0.53
LIG3P49916 CRTAC1-201ENST00000309155 1946 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
LIG3P49916 PNLDC1-207ENST00000610273 1940 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
LIG3P49916 SCT-201ENST00000176195 366 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
LIG3P49916 TNNC1-201ENST00000232975 714 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
LIG3P49916 MED30-201ENST00000297347 985 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
LIG3P49916 RNF144A-AS1-205ENST00000439208 757 ntTSL 3 BASIC18.34■□□□□ 0.53
LIG3P49916 VCX3B-203ENST00000444481 812 ntAPPRIS ALT2 TSL 5 BASIC18.34■□□□□ 0.53
LIG3P49916 VCX3A-203ENST00000612369 812 ntAPPRIS ALT2 TSL 5 BASIC18.34■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 21.1 ms